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Common gene expression patterns are observed in rice roots during associations with plant growth-promoting bacteria, Herbaspirillum seropedicae and Azospirillum brasilense.
- Published in:
- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-12285-3
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- Publication type:
- Article
Conservation of the Exon-Intron Structure of Long Intergenic Non-Coding RNA Genes in Eutherian Mammals.
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- Life (2075-1729), 2016, v. 6, n. 3, p. 27, doi. 10.3390/life6030027
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- Publication type:
- Article
GSAR: Bioconductor package for Gene Set analysis in R.
- Published in:
- BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1482-6
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- Publication type:
- Article
Resistant starch slows the progression of CKD in the 5/6 nephrectomy mouse model.
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- Physiological Reports, 2020, v. 8, n. 19, p. 1, doi. 10.14814/phy2.14610
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- Publication type:
- Article
Ensuring the statistical soundness of competitive gene set approaches: gene filtering and genome-scale coverage are essential.
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- Nucleic Acids Research, 2013, v. 41, n. 7, p. e82, doi. 10.1093/nar/gkt054
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- Publication type:
- Article
Comparing biological information contained in mRNA and non-coding RNAs for classification of lung cancer patients.
- Published in:
- 2019
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- Publication type:
- journal article
Computer prediction of sites associated with various elements of the nuclear matrix.
- Published in:
- Briefings in Bioinformatics, 2000, v. 1, n. 1, p. 33, doi. 10.1093/bib/1.1.33
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- Publication type:
- Article
Evolution of gene expression and expression plasticity in long-term experimental populations of Drosophila melanogaster maintained under constant and variable ethanol stress.
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- Molecular Ecology, 2012, v. 21, n. 17, p. 4287, doi. 10.1111/j.1365-294X.2012.05697.x
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- Publication type:
- Article
Computational Prediction of Polycomb-Associated Long Non-Coding RNAs.
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- PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0044878
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- Publication type:
- Article
Nucleotide Weight Matrices Reveal Ubiquitous Mutational Footprints of AID/APOBEC Deaminases in Human Cancer Genomes.
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- Cancers, 2019, v. 11, n. 2, p. 211, doi. 10.3390/cancers11020211
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- Publication type:
- Article
Domestication and microbiome.
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- Holocene, 2021, v. 31, n. 10, p. 1635, doi. 10.1177/09596836211025975
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- Publication type:
- Article
Domestication and mobile genetic elements.
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- Holocene, 2019, v. 29, n. 3, p. 518, doi. 10.1177/0959683618816442
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- Publication type:
- Article
Comparative evaluation of gene set analysis approaches for RNA-Seq data.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. 1, p. 379, doi. 10.1186/s12859-014-0397-8
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- Publication type:
- Article
Functional and genetic analysis of the colon cancer network.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. Suppl 6, p. 1, doi. 10.1186/1471-2105-15-S6-S6
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- Publication type:
- Article
Detecting intergene correlation changes in microarray analysis: a new approach to gene selection.
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- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-20
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- Publication type:
- Article
16S rRNA Gene-Based Metagenomic Analysis of Rhizosphere Soil Bacteria in Arkansas Rice Crop Fields.
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- Agronomy, 2022, v. 12, n. 1, p. 222, doi. 10.3390/agronomy12010222
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- Publication type:
- Article
Proteome-transcriptome alignment of molecular portraits achieved by self-contained gene set analysis: Consensus colon cancer subtypes case study.
- Published in:
- PLoS ONE, 2019, v. 14, n. 8, p. 1, doi. 10.1371/journal.pone.0221444
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- Publication type:
- Article
Platform-independent gene expression signature differentiates sessile serrated adenomas/polyps and hyperplastic polyps of the colon.
- Published in:
- BMC Medical Genomics, 2017, v. 10, p. 1, doi. 10.1186/s12920-017-0317-7
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- Publication type:
- Article
Investigating the transcriptomic responses in rice roots during interactions with plant growth‐promoting bacteria, Burkholderia unamae.
- Published in:
- FASEB Journal, 2022, v. 36, p. N.PAG, doi. 10.1096/fasebj.2022.36.S1.L7642
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- Publication type:
- Article
The 29-nucleotide deletion in SARS-CoV: truncated versions of ORF8 are under purifying selection.
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- BMC Genomics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12864-023-09482-3
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- Publication type:
- Article
Pathway Analysis of Expression Data: Deciphering Functional Building Blocks of Complex Diseases.
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- PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002053
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- Publication type:
- Article
Evolution and diversification of lamprey antigen receptors: evidence for involvement of an AID-APOBEC family cytosine deaminase.
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- Nature Immunology, 2007, v. 8, n. 6, p. 647, doi. 10.1038/ni1463
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- Publication type:
- Article
A review of connectivity map and computational approaches in pharmacogenomics.
- Published in:
- Briefings in Bioinformatics, 2018, v. 19, n. 3, p. 506, doi. 10.1093/bib/bbw112
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- Publication type:
- Article
Gene set analysis approaches for RNA-seq data: performance evaluation and application guideline.
- Published in:
- Briefings in Bioinformatics, 2016, v. 17, n. 3, p. 393, doi. 10.1093/bib/bbv069
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- Publication type:
- Article
Estimation of Divergence Times for Major Lineages of Primate Species.
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- Molecular Biology & Evolution, 2003, v. 20, n. 3, p. 424, doi. 10.1093/molbev/msg050
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- Publication type:
- Article
The Sad1-UNC-84 homology domain in Mps3 interacts with Mps2 to connect the spindle pole body with the nuclear envelope.
- Published in:
- Journal of Cell Biology, 2006, v. 174, n. 5, p. 665, doi. 10.1083/jcb.200601062
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- Publication type:
- Article
Prognostic gene expression signatures of breast cancer are lacking a sensible biological meaning.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-020-79375-y
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- Publication type:
- Article
16S rRNA Gene-Based Metagenomic Analysis of Ozark Cave Bacteria.
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- Diversity (14242818), 2017, v. 9, n. 3, p. 31, doi. 10.3390/d9030031
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- Publication type:
- Article
The choice of optimal distance measure in genome-wide datasets.
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- Bioinformatics, 2005, v. 21, p. iii3, doi. 10.1093/bioinformatics/bti1201
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- Publication type:
- Article
Interphase Nucleus and Transposable Elements (Review).
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- Biogeosystem Technique, 2022, v. 9, n. 2, p. 62, doi. 10.13187/bgt.2022.2.62
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- Publication type:
- Article
Measuring gene expression divergence: the distance to keep.
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- Biology Direct, 2010, v. 5, p. 51, doi. 10.1186/1745-6150-5-51
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- Publication type:
- Article
Evolutionary history of bacteriophages with double-stranded DNA genomes.
- Published in:
- Biology Direct, 2007, v. 2, p. 36, doi. 10.1186/1745-6150-2-36
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- Publication type:
- Article
Mutational hotspots in the TP53 gene and, possibly, other tumor suppressors evolve by positive selection.
- Published in:
- Biology Direct, 2006, v. 1, p. 1, doi. 10.1186/1745-6150-1-4
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- Publication type:
- Article
Similarity searches in genome-wide numerical data sets.
- Published in:
- Biology Direct, 2006, v. 1, p. 13, doi. 10.1186/1745-6150-1-13
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- Publication type:
- Article
RNA-Seq Analysis of Spinal Cord Tissues from hPFN1<sup>G118V</sup> Transgenic Mouse Model of ALS at Pre-symptomatic and End-Stages of Disease.
- Published in:
- Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-31132-y
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- Publication type:
- Article
RNA-seq reveals differentially expressed genes in rice (Oryza sativa) roots during interactions with plant-growth promoting bacteria, Azospirillum brasilense.
- Published in:
- PLoS ONE, 2019, v. 14, n. 5, p. 1, doi. 10.1371/journal.pone.0217309
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- Publication type:
- Article
Metaproteomics reveals potential mechanisms by which dietary resistant starch supplementation attenuates chronic kidney disease progression in rats.
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- PLoS ONE, 2019, v. 14, n. 01, p. 1, doi. 10.1371/journal.pone.0199274
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- Publication type:
- Article
A MULTIVARIATE EXTENSION OF THE GENE SET ENRICHMENT ANALYSIS.
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- Journal of Bioinformatics & Computational Biology, 2007, v. 5, n. 5, p. 1139, doi. 10.1142/S0219720007003041
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- Publication type:
- Article
Use of mutation spectra analysis software.
- Published in:
- Human Mutation, 2001, v. 17, n. 2, p. 83, doi. 10.1002/1098-1004(200102)17:2<83::AID-HUMU1>3.0.CO;2-E
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- Publication type:
- Article
samExploreR: exploring reproducibility and robustness of RNA-seq results based on SAM files.
- Published in:
- Bioinformatics, 2016, v. 32, n. 21, p. 3345, doi. 10.1093/bioinformatics/btw475
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- Publication type:
- Article
Gene Sets Net Correlations Analysis (GSNCA): a multivariate differential coexpression test for gene sets.
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- Bioinformatics, 2014, v. 30, n. 3, p. 360, doi. 10.1093/bioinformatics/btt687
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- Publication type:
- Article
A new gene selection procedure based on the covariance distance.
- Published in:
- Bioinformatics, 2010, v. 26, n. 3, p. 348, doi. 10.1093/bioinformatics/btp672
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- Publication type:
- Article
Unite and conquer: univariate and multivariate approaches for finding differentially expressed gene sets.
- Published in:
- Bioinformatics, 2009, v. 25, n. 18, p. 2348, doi. 10.1093/bioinformatics/btp406
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- Publication type:
- Article
Milk Formula Diet Alters Bacterial and Host Protein Profile in Comparison to Human Milk Diet in Neonatal Piglet Model.
- Published in:
- Nutrients, 2021, v. 13, n. 11, p. 3718, doi. 10.3390/nu13113718
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- Publication type:
- Article