Works by Glavina del Rio, Tijana

Results: 25

Defining the core Arabidopsis thaliana root microbiome.
Published in:
Nature, 2012, v. 488, n. 7409, p. 86, doi. 10.1038/nature11237
By:
- Lundberg, Derek S.;
- Lebeis, Sarah L.;
- Paredes, Sur Herrera;
- Yourstone, Scott;
- Gehring, Jase;
- Malfatti, Stephanie;
- Tremblay, Julien;
- Engelbrektson, Anna;
- Kunin, Victor;
- Rio, Tijana Glavina del;
- Edgar, Robert C.;
- Eickhorst, Thilo;
- Ley, Ruth E.;
- Hugenholtz, Philip;
- Tringe, Susannah Green;
- Dangl, Jeffery L.
Publication type:
Article
Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach.
Published in:
PLoS ONE, 2017, v. 12, n. 5, p. 1, doi. 10.1371/journal.pone.0177189
By:
- Gontang, Erin A.;
- Aylward, Frank O.;
- Carlos, Camila;
- Glavina del Rio, Tijana;
- Chovatia, Mansi;
- Fern, Alison;
- Lo, Chien-Chi;
- Malfatti, Stephanie A.;
- Tringe, Susannah G.;
- Currie, Cameron R.;
- Kolter, Roberto
Publication type:
Article
Diversity and Distribution of a Novel Genus of Hyperthermophilic Aquificae Viruses Encoding a Proof-Reading Family-A DNA Polymerase.
Published in:
Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.583361
By:
- Palmer, Marike;
- Hedlund, Brian P.;
- Roux, Simon;
- Tsourkas, Philippos K.;
- Doss, Ryan K.;
- Stamereilers, Casey;
- Mehta, Astha;
- Dodsworth, Jeremy A.;
- Lodes, Michael;
- Monsma, Scott;
- Glavina del Rio, Tijana;
- Schoenfeld, Thomas W.;
- Eloe-Fadrosh, Emiley A.;
- Mead, David A.
Publication type:
Article
Phototrophic Co-cultures From Extreme Environments: Community Structure and Potential Value for Fundamental and Applied Research.
Published in:
Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.572131
By:
- Shaw, Claire;
- Brooke, Charles;
- Hawley, Erik;
- Connolly, Morgan P.;
- Garcia, Javier A.;
- Harmon-Smith, Miranda;
- Shapiro, Nicole;
- Barton, Michael;
- Tringe, Susannah G.;
- Glavina del Rio, Tijana;
- Culley, David E.;
- Castenholz, Richard;
- Hess, Matthias
Publication type:
Article
Correction: Identification of beneficial and detrimental bacteria impacting sorghum responses to drought using multi-scale and multi-system microbiome comparisons.
Published in:
2023
By:
- Qi, Mingsheng;
- Berry, Jeffrey C.;
- Veley, Kira M.;
- O'Connor, Lily;
- Finkel, Omri M.;
- Salas-González, Isai;
- Kuhs, Molly;
- Jupe, Julietta;
- Holcomb, Emily;
- Glavina del Rio, Tijana;
- Creech, Cody;
- Liu, Peng;
- Tringe, Susannah G.;
- Dangl, Jeffery L.;
- Schachtman, Daniel P.;
- Bart, Rebecca S.
Publication type:
Correction Notice
Identification of beneficial and detrimental bacteria impacting sorghum responses to drought using multi-scale and multi-system microbiome comparisons.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2022, v. 16, n. 8, p. 1957, doi. 10.1038/s41396-022-01245-4
By:
- Qi, Mingsheng;
- Berry, Jeffrey C.;
- Veley, Kira W.;
- O'Connor, Lily;
- Finkel, Omri M.;
- Salas-González, Isai;
- Kuhs, Molly;
- Jupe, Julietta;
- Holcomb, Emily;
- Glavina del Rio, Tijana;
- Creech, Cody;
- Liu, Peng;
- Tringe, Susannah G.;
- Dangl, Jeffery L.;
- Schachtman, Daniel P.;
- Bart, Rebecca S.
Publication type:
Article
Phage-specific metabolic reprogramming of virocells.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2020, v. 14, n. 4, p. 881, doi. 10.1038/s41396-019-0580-z
By:
- Howard-Varona, Cristina;
- Lindback, Morgan M.;
- Bastien, G. Eric;
- Solonenko, Natalie;
- Zayed, Ahmed A.;
- Jang, HoBin;
- Andreopoulos, Bill;
- Brewer, Heather M.;
- Glavina del Rio, Tijana;
- Adkins, Joshua N.;
- Paul, Subhadeep;
- Sullivan, Matthew B.;
- Duhaime, Melissa B.
Publication type:
Article
In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2019, v. 13, n. 11, p. 2800, doi. 10.1038/s41396-019-0476-y
By:
- Krüger, Karen;
- Chafee, Meghan;
- Ben Francis, T.;
- Glavina del Rio, Tijana;
- Becher, Dörte;
- Schweder, Thomas;
- Amann, Rudolf I.;
- Teeling, Hanno
Publication type:
Article
Peatland Acidobacteria with a dissimilatory sulfur metabolism.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2018, v. 12, n. 7, p. 1729, doi. 10.1038/s41396-018-0077-1
By:
- Hausmann, Bela;
- Pelikan, Claus;
- Herbold, Craig W.;
- Köstlbacher, Stephan;
- Albertsen, Mads;
- Eichorst, Stephanie A.;
- Glavina del Rio, Tijana;
- Huemer, Martin;
- Nielsen, Per H.;
- Rattei, Thomas;
- Stingl, Ulrich;
- Tringe, Susannah G.;
- Trojan, Daniela;
- Wentrup, Cecilia;
- Woebken, Dagmar;
- Pester, Michael;
- Loy, Alexander
Publication type:
Article
Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2016, v. 10, n. 10, p. 2365, doi. 10.1038/ismej.2016.42
By:
- Hausmann, Bela;
- Knorr, Klaus-Holger;
- Schreck, Katharina;
- Tringe, Susannah G;
- Glavina del Rio, Tijana;
- Loy, Alexander;
- Pester, Michael
Publication type:
Article
Metatranscriptomic insights on gene expression and regulatory controls in Candidatus Accumulibacter phosphatis.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2016, v. 10, n. 4, p. 810, doi. 10.1038/ismej.2015.155
By:
- Oyserman, Ben O;
- Noguera, Daniel R;
- del Rio, Tijana Glavina;
- Tringe, Susannah G;
- McMahon, Katherine D
Publication type:
Article
Comparative genomics of two 'Candidatus Accumulibacter' clades performing biological phosphorus removal.
Published in:
ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 12, p. 2301, doi. 10.1038/ismej.2013.117
By:
- Flowers, Jason J;
- He, Shaomei;
- Malfatti, Stephanie;
- del Rio, Tijana Glavina;
- Tringe, Susannah G;
- Hugenholtz, Philip;
- McMahon, Katherine D
Publication type:
Article
Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate.
Published in:
Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0279-6
By:
- D'haeseleer, Patrik;
- Lee, Jackson Z.;
- Prufert-Bebout, Leslie;
- Burow, Luke C.;
- Detweiler, Angela M.;
- Weber, Peter K.;
- Karaoz, Ulas;
- Brodie, Eoin L.;
- del Rio, Tijana Glavina;
- Tringe, Susannah G.;
- Bebout, Brad M.;
- Pett-Ridge, Jennifer
Publication type:
Article
Draft genome sequence of Dethiobacter alkaliphilus strain AHT1T, a gram-positive sulfidogenic polyextremophile.
Published in:
Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0268-9
By:
- Melton, Emily Denise;
- Sorokin, Dimitry Y.;
- Overmars, Lex;
- Lapidus, Alla L.;
- Pillay, Manoj;
- Ivanova, Natalia;
- del Rio, Tijana Glavina;
- Kyrpides, Nikos C.;
- Woyke, Tanja;
- Muyzer, Gerard
Publication type:
Article
Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34.
Published in:
Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0194-2
By:
- Anderson, Iain J.;
- DasSarma, Priya;
- Lucas, Susan;
- Copeland, Alex;
- Lapidus, Alla;
- Del Rio, Tijana Glavina;
- Tice, Hope;
- Dalin, Eileen;
- Bruce, David C.;
- Goodwin, Lynne;
- Pitluck, Sam;
- Sims, David;
- Brettin, Thomas S.;
- Detter, John C.;
- Han, Cliff S.;
- Larimer, Frank;
- Hauser, Loren;
- Land, Miriam;
- Ivanova, Natalia;
- Richardson, Paul
Publication type:
Article
Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia.
Published in:
Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1076, doi. 10.4056/sigs.5138968
By:
- Göker, Markus;
- Lu, Megan;
- Fiebig, Anne;
- Nolan, Matt;
- Lapidus, Alla;
- Tice, Hope;
- Glavina Del Rio, Tijana;
- Cheng, Jan-Fang;
- Han, Cliff;
- Tapia, Roxanne;
- Goodwin, Lynne;
- Pitluck, Sam;
- Liolios, Konstantinos;
- Mavromatis, Konstantinos;
- Pagani, Ioanna;
- Ivanova, Natalia;
- Mikhailova, Natalia;
- Pati, Amrita;
- Chen, Amy;
- Palaniappan, Krishna
Publication type:
Article
Genome sequence of the Thermotoga thermarum type strain (LA3) from an African solfataric spring.
Published in:
Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1105, doi. 10.4056/sigs.3016383
By:
- Göker, Markus;
- Spring, Stefan;
- Scheuner, Carmen;
- Anderson, Iain;
- Zeytun, Ahmet;
- Nolan, Matt;
- Lucas, Susan;
- Tice, Hope;
- Glavina Del Rio, Tijana;
- Cheng, Jan-Fang;
- Han, Cliff;
- Tapia, Roxanne;
- Goodwin, Lynne;
- Pitluck, Sam;
- Liolios, Konstantinos;
- Mavromatis, Konstantinos;
- Pagani, Ioanna;
- Ivanova, Natalia;
- Mikhailova, Natalia;
- Pati, Amrita
Publication type:
Article
Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California.
Published in:
Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1259, doi. 10.4056/sigs.5029016
By:
- Hawley, Erik;
- Piao, Hailan;
- Scott, Nicole;
- Malfatti, Stephanie;
- Pagani, Ioanna;
- Huntemann, Marcel;
- Chen, Amy;
- Glavina del Rio, Tijana;
- Foster, Brian;
- Copeland, Alex;
- Jansson, Janet;
- Pati, Amrita;
- Tringe, Susannah;
- Gilbert, Jack;
- Lorenson, Thomas;
- Hess, Matthias
Publication type:
Article
Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701) and emended description of the genus Thermanaerovibrio.
Published in:
Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 57, doi. 10.4056/sigs.4237901
By:
- Palaniappan, Krishna;
- Meier-Kolthoff, Jan;
- Teshima, Hazuki;
- Nolan, Matt;
- Lapidus, Alla;
- Tice, Hope;
- Glavina Del Rio, Tijana;
- Cheng, Jan-Fang;
- Han, Cliff;
- Tapia, Roxanne;
- Goodwin, Lynne;
- Pitluck, Sam;
- Liolios, Konstantinos;
- Mavromatis, Konstantinos;
- Pagani, Ioanna;
- Ivanova, Natalia;
- Mikhailova, Natalia;
- Pati, Amrita;
- Chen, Amy;
- Rohde, Manfred
Publication type:
Article
Genome sequence of Frateuria aurantia type strain (Kondô 67), a xanthomonade isolated from Lilium auratium Lindl.
Published in:
Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 83, doi. 10.4056/sigs.4338002
By:
- Anderson, Iain;
- Teshima, Huzuki;
- Nolan, Matt;
- Lapidus, Alla;
- Tice, Hope;
- Glavina Del Rio, Tijana;
- Cheng, Jan-Fang;
- Han, Cliff;
- Tapia, Roxanne;
- Goodwin, Lynne;
- Pitluck, Sam;
- Liolios, Konstantinos;
- Mavromatis, Konstantinos;
- Pagani, Ioanna;
- Ivanova, Natalia;
- Mikhailova, Natalia;
- Pati, Amrita;
- Chen, Amy;
- Palaniappan, Krishna;
- Land, Miriam
Publication type:
Article
Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8T).
Published in:
Standards in Genomic Sciences, 2012, v. 7, n. 2, p. 210, doi. 10.4056/sigs.3117229
By:
- Anderson, Iain;
- Munk, Christine;
- Lapidus, Alla;
- Nolan, Matt;
- Lucas, Susan;
- Tice, Hope;
- Del Rio, Tijana Glavina;
- Jan-Fang Cheng;
- Han, Cliff;
- Tapia, Roxanne;
- Goodwin, Lynne;
- Pitluck, Sam;
- Liolios, Konstantinos;
- Mavromatis, Konstantinos;
- Pagani, Ioanna;
- Mikhailova, Natalia;
- Pati, Amrita;
- Chen, Amy;
- Palaniappan, Krishna;
- Land, Miriam
Publication type:
Article
Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801T).
Published in:
Standards in Genomic Sciences, 2012, v. 7, n. 1, p. 120, doi. 10.4056/sigs.3296896
By:
- Riedel, Thomas;
- Held, Brittany;
- Nolan, Matt;
- Lucas, Susan;
- Lapidus, Alla;
- Tice, Hope;
- Del Rio, Tijana Glavina;
- Cheng, Jan-Fang;
- Han, Cliff;
- Tapia, Roxanne;
- Goodwin, Lynne A.;
- Pitluck, Sam;
- Liolios, Konstantinos;
- Mavromatis, Konstantinos;
- Pagani, Ioanna;
- Ivanova, Natalia;
- Mikhailova, Natalia;
- Pati, Amrita;
- Chen, Amy;
- Palaniappan, Krishna
Publication type:
Article
Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282T).
Published in:
Standards in Genomic Sciences, 2012, v. 7, n. 1, p. 107, doi. 10.4056/sigs.3216895
By:
- Riedel, Thomas;
- Held, Brittany;
- Nolan, Matt;
- Lucas, Susan;
- Lapidus, Alla;
- Tice, Hope;
- Del Rio, Tijana Glavina;
- Cheng, Jan-Fang;
- Han, Cliff;
- Tapia, Roxanne;
- Goodwin, Lynne A.;
- Pitluck, Sam;
- Liolios, Konstantinos;
- Mavromatis, Konstantinos;
- Pagani, Ioanna;
- Ivanova, Natalia;
- Mikhailova, Natalia;
- Pati, Amrita;
- Chen, Amy;
- Palaniappan, Krishna
Publication type:
Article
Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093T).
Published in:
2012
By:
- Kappler, Ulrike;
- Davenport, Karen;
- Beatson, Scott;
- Lucas, Susan;
- Lapidus, Alla;
- Copeland, Alex;
- Berry, Kerrie W.;
- Del Rio, Tijana Glavina;
- Hammon, Nancy;
- Dalin, Eileen;
- Tice, Hope;
- Pitluck, Sam;
- Richardson, Paul;
- Bruce, David;
- Goodwin, Lynne A.;
- Han, Cliff;
- Tapia, Roxanne;
- Detter, John C.;
- Chang, Yun-juan;
- Jeffries, Cynthia D.
Publication type:
Art Reproduction
Metagenomic Profiling Reveals Lignocellulose Degrading System in a Microbial Community Associated with a Wood-Feeding Beetle.
Published in:
PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0073827
By:
- Scully, Erin D.;
- Geib, Scott M.;
- Hoover, Kelli;
- Tien, Ming;
- Tringe, Susannah G.;
- Barry, Kerrie W.;
- Glavina del Rio, Tijana;
- Chovatia, Mansi;
- Herr, Joshua R.;
- Carlson, John E.
Publication type:
Article

Works by Glavina del Rio, Tijana

Defining the core Arabidopsis thaliana root microbiome.

Major changes in microbial diversity and community composition across gut sections of a juvenile Panchlora cockroach.

Diversity and Distribution of a Novel Genus of Hyperthermophilic Aquificae Viruses Encoding a Proof-Reading Family-A DNA Polymerase.

Phototrophic Co-cultures From Extreme Environments: Community Structure and Potential Value for Fundamental and Applied Research.

Correction: Identification of beneficial and detrimental bacteria impacting sorghum responses to drought using multi-scale and multi-system microbiome comparisons.

Identification of beneficial and detrimental bacteria impacting sorghum responses to drought using multi-scale and multi-system microbiome comparisons.

Phage-specific metabolic reprogramming of virocells.

In marine Bacteroidetes the bulk of glycan degradation during algae blooms is mediated by few clades using a restricted set of genes.

Peatland Acidobacteria with a dissimilatory sulfur metabolism.

Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms.

Metatranscriptomic insights on gene expression and regulatory controls in Candidatus Accumulibacter phosphatis.

Comparative genomics of two 'Candidatus Accumulibacter' clades performing biological phosphorus removal.

Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate.

Draft genome sequence of Dethiobacter alkaliphilus strain AHT1<sup>T</sup>, a gram-positive sulfidogenic polyextremophile.

Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34.

Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia.

Genome sequence of the Thermotoga thermarum type strain (LA3) from an African solfataric spring.

Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California.

Genome sequence of the moderately thermophilic sulfur-reducing bacterium Thermanaerovibrio velox type strain (Z-9701) and emended description of the genus Thermanaerovibrio.

Genome sequence of Frateuria aurantia type strain (Kondô 67), a xanthomonade isolated from Lilium auratium Lindl.

Genome sequence of the flexirubin-pigmented soil bacterium Niabella soli type strain (JS13-8<sup>T</sup>).

Genome sequence of the orange-pigmented seawater bacterium Owenweeksia hongkongensis type strain (UST20020801<sup>T</sup>).

Genome sequence of the Antarctic rhodopsins-containing flavobacterium Gillisia limnaea type strain (R-8282<sup>T</sup>).

Complete genome sequence of the facultatively chemolithoautotrophic and methylotrophic alpha Proteobacterium Starkeya novella type strain (ATCC 8093<sup>T</sup>).

Metagenomic Profiling Reveals Lignocellulose Degrading System in a Microbial Community Associated with a Wood-Feeding Beetle.