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A seed germination transcriptomic study contrasting two soybean genotypes that differ in terms of their tolerance to the deleterious impacts of elevated temperatures during seed fill.
Published in:
BMC Research Notes, 2019, v. 12, n. 1, p. N.PAG, doi. 10.1186/s13104-019-4559-7
By:
- Gillman, Jason D.;
- Biever, Jessica J.;
- Ye, Songqing;
- Spollen, William G.;
- Givan, Scott A.;
- Lyu, Zhen;
- Joshi, Trupti;
- Smith, James R.;
- Fritschi, Felix B.
Publication type:
Article
High-throughput sequence analysis reveals structural diversity and improved potency among RNA inhibitors of HIV reverse transcriptase.
Published in:
Nucleic Acids Research, 2013, v. 41, n. 3, p. 1873, doi. 10.1093/nar/gks1190
By:
- Ditzler, Mark A.;
- Lange, Margaret J.;
- Bose, Debojit;
- Bottoms, Christopher A.;
- Virkler, Katherine F.;
- Sawyer, Andrew W.;
- Whatley, Angela S.;
- Spollen, William;
- Givan, Scott A.;
- Burke, Donald H.
Publication type:
Article
Update of ASRP: the Arabidopsis Small RNA Project database.
Published in:
Nucleic Acids Research, 2008, v. 36, p. D982
By:
- Backman, Tyler W. H.;
- Sullivan, Christopher M.;
- Cumbie, Jason S.;
- Miller, Zachary A.;
- Chapman, Elisabeth J.;
- Fahlgren, Noah;
- Givan, Scott A.;
- Carrington, James C.;
- Kasschau, Kristin D.
Publication type:
Article
Corrigendum: Discovery of a Novel Seminal Fluid Microbiome and Influence of Estrogen Receptor Alpha Genetic Status.
Published in:
Scientific Reports, 2016, p. 25216, doi. 10.1038/srep25216
By:
- Javurek, Angela B.;
- Spollen, William G.;
- Mann Ali, Amber M.;
- Johnson, Sarah A.;
- Lubahn, Dennis B.;
- Bivens, Nathan J.;
- Bromert, Karen H.;
- Ellersieck, Mark R.;
- Givan, Scott A.;
- Rosenfeld, Cheryl S.
Publication type:
Article
Discovery of a Novel Seminal Fluid Microbiome and Influence of Estrogen Receptor Alpha Genetic Status.
Published in:
Scientific Reports, 2016, p. 23027, doi. 10.1038/srep23027
By:
- Javurek, Angela B.;
- Spollen, William G.;
- Ali, Amber M. Mann;
- Johnson, Sarah A.;
- Lubahn, Dennis B.;
- Bivens, Nathan J.;
- Bromert, Karen H.;
- Ellersieck, Mark R.;
- Givan, Scott A.;
- Rosenfeld, Cheryl S.
Publication type:
Article
Effects of Vendor and Genetic Background on the Composition of the Fecal Microbiota of Inbred Mice.
Published in:
PLoS ONE, 2015, v. 10, n. 2, p. 1, doi. 10.1371/journal.pone.0116704
By:
- Ericsson, Aaron C.;
- Davis, J. Wade;
- Spollen, William;
- Bivens, Nathan;
- Givan, Scott;
- Hagan, Catherine E.;
- McIntosh, Mark;
- Franklin, Craig L.
Publication type:
Article
Analysis of Genome Sequences from Plant Pathogenic <i>Rhodococcus</i> Reveals Genetic Novelties in Virulence Loci.
Published in:
PLoS ONE, 2014, v. 9, n. 7, p. 1, doi. 10.1371/journal.pone.0101996
By:
- Creason, Allison L.;
- Vandeputte, Olivier M.;
- Savory, Elizabeth A.;
- Davis II, Edward W.;
- Putnam, Melodie L.;
- Hu, Erdong;
- Swader-Hines, David;
- Mol, Adeline;
- Baucher, Marie;
- Prinsen, Els;
- Zdanowska, Magdalena;
- Givan, Scott A.;
- Jaziri, Mondher El;
- Loper, Joyce E.;
- Mahmud, Taifo;
- Chang, Jeff H.
Publication type:
Article
Assembly and Characterization of the European Hazelnut 'Jefferson5 Transcriptome.
Published in:
Crop Science, 2012, v. 52, n. 6, p. 2679, doi. 10.2135/cropsci2012.02.0065
By:
- Rowley, Erik R.;
- Fox, Samuel E.;
- Bryant, Douglas W.;
- Sullivan, Christopher M.;
- Priest, Henry D.;
- Givan, Scott A.;
- Mehlenbacher, Shawn A.;
- Mockler, Todd C.
Publication type:
Article
The Personal Sequence Database: a suite of tools to create andmaintain web-accessible sequence databases.
Published in:
BMC Bioinformatics, 2007, v. 8, p. 479, doi. 10.1186/1471-2105-8-479
By:
- Givan, Scott A.;
- Sullivan, Christopher M.;
- Carrington, James C.
Publication type:
Article
MicroRNA Gene Evolution in Arabidopsis lyrata and Arabidopsis thaliana.
Published in:
Plant Cell, 2010, v. 22, n. 4, p. 1074, doi. 10.1105/tpc.110.073999
By:
- Fahlgren, Noah;
- Jogdeo, Sanjuro;
- Kasschau, Kristin D.;
- Sullivan, Christopher M.;
- Chapman, Elisabeth J.;
- Laubinger, Sascha;
- Smith, Lisa M.;
- Dasenko, Mark;
- Givan, Scott A.;
- Weigel, Detlef;
- Carrington, James C.
Publication type:
Article
ASRP: the Arabidopsis Small RNA Project Database.
Published in:
Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d637
By:
- Gustafson, Adam M.;
- Allen, Edwards;
- Givan, Scott;
- Smith, Daniel;
- Carrington, James C.;
- Kasschau, Kristin D.
Publication type:
Article
The small genome of an abundant coastal ocean methylotroph.
Published in:
Environmental Microbiology, 2008, v. 10, n. 7, p. 1771, doi. 10.1111/j.1462-2920.2008.01598.x
By:
- Giovannoni, Stephen J.;
- Hayakawa, Darin H.;
- Tripp, H. James;
- Stingl, Ulrich;
- Givan, Scott A.;
- Jang-Cheon Cho;
- Hyun-Myung Oh;
- Kitner, Joshua B.;
- Vergin, Kevin L.;
- Rappé, Michael S.
Publication type:
Article
Polyphyletic photosynthetic reaction centre genes in oligotrophic marine Gammaproteobacteria.
Published in:
Environmental Microbiology, 2007, v. 9, n. 6, p. 1456, doi. 10.1111/j.1462-2920.2007.01264.x
By:
- Cho, Jang-Cheon;
- Stapels, Martha D.;
- Morris, Robert M.;
- Vergin, Kevin L.;
- Schwalbach, Michael S.;
- Givan, Scott A.;
- Barofsky, Douglas F.;
- Giovannoni, Stephen J.
Publication type:
Article
Discovery of novel transcripts and gametophytic functions via RNA-seq analysis of maize gametophytic transcriptomes.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 1, doi. 10.1186/s13059-014-0414-2
By:
- Chettoor, Antony M.;
- Givan, Scott A.;
- Cole, Rex A.;
- Coker, Clayton T.;
- Unger-Wallace, Erica;
- Vejlupkova, Zuzana;
- Vollbrecht, Erik;
- Fowler, John E.;
- Evans, Matthew M. S.
Publication type:
Article
Genome-wide discovery and characterization of maize long non-coding RNAs.
Published in:
Genome Biology, 2014, v. 15, n. 2, p. 1, doi. 10.1186/gb-2014-15-2-r40
By:
- Lin Li;
- Eichten, Steven R.;
- Shimizu, Rena;
- Petsch, Katherine;
- Cheng-Ting Yeh;
- Wei Wu;
- Chettoor, Antony M.;
- Givan, Scott A.;
- Cole, Rex A.;
- Fowler, John E.;
- Evans, Matthew M. S.;
- Scanlon, Michael J.;
- Jianming Yu;
- Schnable, Patrick S.;
- Timmermans, Marja C. P.;
- Springer, Nathan M.;
- Muehlbauer, Gary J.
Publication type:
Article
Toxicogenomic Profiling of the Hepatic Tumor Promoters Indole-3-Carbinol, 17β-Estradiol and β-Naphthoflavone in Rainbow Trout.
Published in:
Toxicological Sciences, 2006, v. 90, n. 1, p. 61, doi. 10.1093/toxsci/kfi341
By:
- Tilton, Susan C.;
- Givan, Scott A.;
- Pereira, Cliff B.;
- Bailey, George S.;
- Williams, David E.
Publication type:
Article
Use of a Rainbow Trout Oligonucleotide Microarray to Determine Transcriptional Patterns in Aflatoxin B1-Induced Hepatocellular Carcinoma Compared to Adjacent Liver.
Published in:
Toxicological Sciences, 2005, v. 88, n. 2, p. 319, doi. 10.1093/toxsci/kfi309
By:
- Tilton, Susan C.;
- Gerwick, Lena G.;
- Hendricks, Jerry D.;
- Rosato, Caprice S.;
- Corley-Smith, Graham;
- Givan, Scott A.;
- Bailey, George S.;
- Bayne, Christopher J.;
- Williams, David E.
Publication type:
Article
Genome-Wide Profiling and Analysis of Arabidopsis siRNAs.
Published in:
PLoS Biology, 2007, v. 5, n. 3, p. 0479, doi. 10.1371/journal.pbio.0050057
By:
- Kasschau, Kristin D.;
- Fahlgren, Noah;
- Chapman, Elisabeth J.;
- Sullivan, Christopher M.;
- Cumbie, Jason S.;
- Givan, Scott A.;
- Carrington, James C.
Publication type:
Article
Correction to: Genome-wide discovery and characterization of maize long non-coding RNAs.
Published in:
Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1508-z
By:
- Li, Lin;
- Eichten, Steven R.;
- Shimizu, Rena;
- Petsch, Katherine;
- Yeh, Cheng-Ting;
- Wu, Wei;
- Chettoor, Antony M.;
- Givan, Scott A.;
- Cole, Rex A.;
- Fowler, John E.;
- Evans, Matthew M. S.;
- Scanlon, Michael J.;
- Yu, Jianming;
- Schnable, Patrick S.;
- Timmermans, Marja C. P.;
- Springer, Nathan M.;
- Muehlbauer, Gary J.
Publication type:
Article
Natural variation in SAR11 marine bacterioplankton genomes inferred from metagenomic data.
Published in:
Biology Direct, 2007, v. 2, p. 27, doi. 10.1186/1745-6150-2-27
By:
- Wilhelm, Larry J.;
- Tripp, H. James;
- Givan, Scott A.;
- Smith, Daniel P.;
- Giovannoni, Stephen J.
Publication type:
Article
Sexual dimorphism in brain transcriptomes of Amami spiny rats (Tokudaia osimensis): a rodent species where males lack the Y chromosome.
Published in:
BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-5426-6
By:
- Ortega, Madison T.;
- Bivens, Nathan J.;
- Jogahara, Takamichi;
- Kuroiwa, Asato;
- Givan, Scott A.;
- Rosenfeld, Cheryl S.
Publication type:
Article
Network Discovery Pipeline Elucidates Conserved Time-of-Day-Specific cis-Regulatory Modules.
Published in:
PLoS Genetics, 2008, v. 4, n. 2, p. 1, doi. 10.1371/journal.pgen.0040014
By:
- Michael, Todd P.;
- Mockler, Todd C.;
- Breton, Ghislain;
- McEntee^1, Connor;
- Byer^1, Amanda;
- Trout, Jonathan D.;
- Hazen, Samuel P.;
- Rongkun Shen;
- Priest, Henry D.;
- Sullivan, Christopher M.;
- Givan, Scott A.;
- Yanovsky, Marcelo;
- Fangxin Hong;
- Kay, Steve A.;
- Chory, Joanne
Publication type:
Article
The novel cyst nematode effector protein 30D08 targets host nuclear functions to alter gene expression in feeding sites.
Published in:
New Phytologist, 2018, v. 219, n. 2, p. 697, doi. 10.1111/nph.15179
By:
- Verma, Anju;
- Lee, Chris;
- Morriss, Stephanie;
- Odu, Fiona;
- Kenning, Charlotte;
- Rizzo, Nancy;
- Spollen, William G.;
- Lin, Marriam;
- McRae, Amanda G.;
- Givan, Scott A.;
- Hewezi, Tarek;
- Hussey, Richard;
- Davis, Eric L.;
- Baum, Thomas J.;
- Mitchum, Melissa G.
Publication type:
Article
HIP14, a novel ankyrin domain-containing protein, links huntingtin to intracellular trafficking and endocytosis.
Published in:
Human Molecular Genetics, 2002, v. 11, n. 23, p. 2815, doi. 10.1093/hmg/11.23.2815
By:
- Singaraja, Roshni R.;
- Hadano, Shinji;
- Metzler, Martina;
- Givan, Scott;
- Wellington, Cheryl L.;
- Warby, Simon;
- Yanai, Anat;
- Gutekunst, Claire-Anne;
- Leavitt, Blair R.;
- Yi, Hong;
- Fichter, Keith;
- Gan, Lu;
- McCutcheon, Krista;
- Chopra, Vikramjit;
- Michel, Jennifer;
- Hersch, Steven M.;
- Ikeda, Joh-E;
- Hayden, Michael R.
Publication type:
Article
An improved, high-quality draft genome sequence of the Germination-Arrest Factorproducing Pseudomonas fluorescens WH6.
Published in:
BMC Genomics, 2010, v. 11, p. 522, doi. 10.1186/1471-2164-11-522
By:
- Kimbrel, Jeffrey A.;
- Givan, Scott A.;
- Halgren, Anne B.;
- Creason, Allison L.;
- Mills, Dallice I.;
- Banowetz, Gary M.;
- Armstrong, Donald J.;
- Chang, Jeff H.
Publication type:
Article
Genome sequencing and comparative analysis of the carrot bacterial blight pathogen, Xanthomonas hortorum pv. carotae M081, for insights into pathogenicity and applications in molecular diagnostics.
Published in:
Molecular Plant Pathology, 2011, v. 12, n. 6, p. 580, doi. 10.1111/j.1364-3703.2010.00694.x
By:
- KIMBREL, JEFFREY A.;
- GIVAN, SCOTT A.;
- TEMPLE, TODD N.;
- JOHNSON, KENNETH B.;
- CHANG, JEFF H.
Publication type:
Article
Genome‐based taxonomic analysis of the genus Pseudoalteromonas reveals heterotypic synonyms.
Published in:
Environmental Microbiology, 2024, v. 26, n. 7, p. 1, doi. 10.1111/1462-2920.16672
By:
- Videau, Patrick;
- Shlafstein, Maximillian D.;
- Oline, David K.;
- Givan, Scott A.;
- Chapman, Linda Fleet;
- Strangman, Wendy K.;
- Hahnke, Richard L.;
- Saw, Jimmy H.;
- Ushijima, Blake
Publication type:
Article

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