Works by Giraldez, Antonio J.

Results: 21

Genetically encoded affinity reagents are a toolkit for visualizing and manipulating endogenous protein function in vivo.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-61003-w

By:

Boswell, Curtis W.;
Hoppe, Caroline;
Sherrard, Alice;
Miao, Liyun;
Kojima, Mina L.;
Martino, Pieter;
Zhao, Ning;
Stasevich, Timothy J.;
Nicoli, Stefania;
Giraldez, Antonio J.

Publication type:

Article

linc-mipep and linc-wrb encode micropeptides that regulate chromatin accessibility in vertebrate-specific neural cells.

Published in:

eLife, 2023, p. 1, doi. 10.7554/eLife.82249

By:

Tornini, Valerie A.;
Liyun Miao;
Ho-Joon Lee;
Gerson, Timothy;
Dube, Sarah E.;
Schmidt, Valeria;
Kroll, François;
Yin Tang;
Du, Katherine;
Kuchroo, Manik;
Vejnar, Charles E.;
Bazzini, Ariel Alejandro;
Krishnaswamy, Smita;
Rihel, Jason;
Giraldez, Antonio J.

Publication type:

Article

NaP-TRAP reveals the regulatory grammar in 5'UTR-mediated translation regulation during zebrafish development.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-55274-y

By:

Strayer, Ethan C.;
Krishna, Srikar;
Lee, Haejeong;
Vejnar, Charles;
Neuenkirchen, Nils;
Gupta, Amit;
Beaudoin, Jean-Denis;
Giraldez, Antonio J.

Publication type:

Article

RES complex is associated with intron definition and required for zebrafish early embryogenesis.

Published in:

PLoS Genetics, 2018, v. 14, n. 7, p. 1, doi. 10.1371/journal.pgen.1007473

By:

Fernandez, Juan Pablo;
Moreno-Mateos, Miguel Angel;
Gohr, Andre;
Miao, Liyun;
Chan, Shun Hang;
Irimia, Manuel;
Giraldez, Antonio J.

Publication type:

Article

LabxDB: versatile databases for genomic sequencing and lab management.

Published in:

Bioinformatics, 2020, v. 36, n. 16, p. 4530, doi. 10.1093/bioinformatics/btaa557

By:

Vejnar, Charles E;
Giraldez, Antonio J

Publication type:

Article

Genome editing in animals with minimal PAM CRISPR-Cas9 enzymes.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30228-4

By:

Vicencio, Jeremy;
Sánchez-Bolaños, Carlos;
Moreno-Sánchez, Ismael;
Brena, David;
Vejnar, Charles E.;
Kukhtar, Dmytro;
Ruiz-López, Miguel;
Cots-Ponjoan, Mariona;
Rubio, Alejandro;
Melero, Natalia Rodrigo;
Crespo-Cuadrado, Jesús;
Carolis, Carlo;
Pérez-Pulido, Antonio J.;
Giráldez, Antonio J.;
Kleinstiver, Benjamin P.;
Cerón, Julián;
Moreno-Mateos, Miguel A.

Publication type:

Article

Satb2 acts as a gatekeeper for major developmental transitions during early vertebrate embryogenesis.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-26234-7

By:

Pradhan, Saurabh J.;
Reddy, Puli Chandramouli;
Smutny, Michael;
Sharma, Ankita;
Sako, Keisuke;
Oak, Meghana S.;
Shah, Rini;
Pal, Mrinmoy;
Deshpande, Ojas;
Dsilva, Greg;
Tang, Yin;
Mishra, Rakesh;
Deshpande, Girish;
Giraldez, Antonio J.;
Sonawane, Mahendra;
Heisenberg, Carl-Philipp;
Galande, Sanjeev

Publication type:

Article

Bicc1 and Dicer regulate left-right patterning through post-transcriptional control of the Nodal inhibitor Dand5.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25464-z

By:

Maerker, Markus;
Getwan, Maike;
Dowdle, Megan E.;
McSheene, Jason C.;
Gonzalez, Vanessa;
Pelliccia, José L.;
Hamilton, Danielle S.;
Yartseva, Valeria;
Vejnar, Charles;
Tingler, Melanie;
Minegishi, Katsura;
Vick, Philipp;
Giraldez, Antonio J.;
Hamada, Hiroshi;
Burdine, Rebecca D.;
Sheets, Michael D.;
Blum, Martin;
Schweickert, Axel

Publication type:

Article

miRNA regulation of Sdf1 chemokine signaling provides genetic robustness to germ cell migration.

Published in:

Nature Genetics, 2011, v. 43, n. 3, p. 204, doi. 10.1038/ng.758

By:

Staton, Alison A.;
Knaut, Holger;
Giraldez, Antonio J.

Publication type:

Article

Reply to: "On the robustness of germ cell migration and microRNA-mediated regulation of chemokine signaling".

Published in:

Nature Genetics, 2013, v. 45, n. 11, p. 1266, doi. 10.1038/ng.2812

By:

Staton, Alison A;
Knaut, Holger;
Giraldez, Antonio J

Publication type:

Article

Codon identity regulates mRNA stability and translation efficiency during the maternal-to-zygotic transition.

Published in:

EMBO Journal, 2016, v. 35, n. 19, p. 2087, doi. 10.15252/embj.201694699

By:

Bazzini, Ariel A;
Viso, Florencia;
Moreno‐Mateos, Miguel A;
Johnstone, Timothy G;
Vejnar, Charles E;
Qin, Yidan;
Yao, Jun;
Khokha, Mustafa K;
Giraldez, Antonio J

Publication type:

Article

Upstream ORFs are prevalent translational repressors in vertebrates.

Published in:

EMBO Journal, 2016, v. 35, n. 7, p. 706, doi. 10.15252/embj.201592759

By:

Johnstone, Timothy G;
Bazzini, Ariel A;
Giraldez, Antonio J

Publication type:

Article

Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation.

Published in:

EMBO Journal, 2014, v. 33, n. 9, p. 981, doi. 10.1002/embj.201488411

By:

Bazzini, Ariel A;
Johnstone, Timothy G;
Christiano, Romain;
Mackowiak, Sebastian D;
Obermayer, Benedikt;
Fleming, Elizabeth S;
Vejnar, Charles E;
Lee, Miler T;
Rajewsky, Nikolaus;
Walther, Tobias C;
Giraldez, Antonio J

Publication type:

Article

Author Correction: Successful amplification of DNA aboard the International Space Station.

Published in:

2018

By:

Boguraev, Anna-Sophia;
Christensen, Holly C.;
Bonneau, Ashley R.;
Pezza, John A.;
Nichols, Nicole M.;
Giraldez, Antonio J.;
Gray, Michelle M.;
Wagner, Brandon M.;
Aken, Jordan T.;
Foley, Kevin D.;
Copeland, D. Scott;
Kraves, Sebastian;
Saavedra, Ezequiel Alvarez

Publication type:

Correction Notice

Successful amplification of DNA aboard the International Space Station.

Published in:

NPJ Microgravity, 2017, v. 5, n. 1, p. N.PAG, doi. 10.1038/s41526-017-0033-9

By:

Boguraev, Anna-Sophia;
Christensen, Holly C.;
Bonneau, Ashley R.;
Pezza, John A.;
Nichols, Nicole M.;
Giraldez, Antonio J.;
Gray, Michelle M.;
Wagner, Brandon M.;
Aken, Jordan T.;
Foley, Kevin D.;
Copeland, D. Scott;
Kraves, Sebastian;
Alvarez Saavedra, Ezequiel

Publication type:

Article

CRISPR-Cpf1 mediates efficient homology-directed repair and temperature-controlled genome editing.

Published in:

Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-01836-2

By:

Moreno-Mateos, Miguel A.;
Fernandez, Juan P.;
Rouet, Romain;
Vejnar, Charles E.;
Lane, Maura A.;
Mis, Emily;
Khokha, Mustafa K.;
Doudna, Jennifer A.;
Giraldez, Antonio J.

Publication type:

Article

CRISPRscan: designing highly efficient sgRNAs for CRISPR-Cas9 targeting in vivo.

Published in:

Nature Methods, 2015, v. 12, n. 10, p. 982, doi. 10.1038/nmeth.3543

By:

Moreno-Mateos, Miguel A;
Vejnar, Charles E;
Beaudoin, Jean-Denis;
Fernandez, Juan P;
Mis, Emily K;
Khokha, Mustafa K;
Giraldez, Antonio J

Publication type:

Article

Selection-free zinc-finger-nuclease engineering by context-dependent assembly (CoDA).

Published in:

Nature Methods, 2011, v. 8, n. 1, p. 67, doi. 10.1038/nmeth.1542

By:

Sander, Jeffry D.;
Dahlborg, Elizabeth J.;
Goodwin, Mathew J.;
Cade, Lindsay;
Feng Zhang;
Cifuentes, Daniel;
Curtin, Shaun J.;
Blackburn, Jessica S.;
Thibodeau-Beganny, Stacey;
Yiping Qi;
Pierick, Christopher J.;
Hoffman, Ellen;
Maeder, Morgan L.;
Khayter, Cyd;
Reyon, Deepak;
Dobbs, Drena;
Langenau, David M.;
Stupar, Robert M.;
Giraldez, Antonio J.;
Voytas, Daniel F.

Publication type:

Article

Maternal regulation of the vertebrate oocyte-to-embryo transition.

Published in:

PLoS Genetics, 2024, v. 20, n. 7, p. 1, doi. 10.1371/journal.pgen.1011343

By:

Fuentes, Ricardo;
Marlow, Florence L.;
Abrams, Elliott W.;
Zhang, Hong;
Kobayashi, Manami;
Gupta, Tripti;
Kapp, Lee D.;
DiNardo, Zachary;
Heller, Ronald;
Cisternas, Ruth;
García-Castro, Priscila;
Segovia-Miranda, Fabián;
Montecinos-Franjola, Felipe;
Vought, William;
Vejnar, Charles E.;
Giraldez, Antonio J.;
Mullins, Mary C.

Publication type:

Article

Nanog, Pou5f1 and SoxB1 activate zygotic gene expression during the maternal-to-zygotic transition.

Published in:

Nature, 2013, v. 503, n. 7476, p. 360, doi. 10.1038/nature12632

By:

Lee, Miler T.;
Bonneau, Ashley R.;
Takacs, Carter M.;
Bazzini, Ariel A.;
DiVito, Kate R.;
Fleming, Elizabeth S.;
Giraldez, Antonio J.

Publication type:

Article

Quantifying the effect of experimental perturbations at single-cell resolution.

Published in:

Nature Biotechnology, 2021, v. 39, n. 5, p. 619, doi. 10.1038/s41587-020-00803-5

By:

Burkhardt, Daniel B.;
Stanley III, Jay S.;
Tong, Alexander;
Perdigoto, Ana Luisa;
Gigante, Scott A.;
Herold, Kevan C.;
Wolf, Guy;
Giraldez, Antonio J.;
van Dijk, David;
Krishnaswamy, Smita

Publication type:

Article