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PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species.
- Published in:
- Plant Cell, 2011, v. 23, n. 3, p. 895, doi. 10.1105/tpc.111.083667
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- Article
Age-dependent regulation of ERF-VII transcription factor activity in Arabidopsis thaliana.
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- Plant, Cell & Environment, 2017, v. 40, n. 10, p. 2333, doi. 10.1111/pce.13037
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- Article
Co-expression tools for plant biology: opportunities for hypothesis generation and caveats.
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- Plant, Cell & Environment, 2009, v. 32, n. 12, p. 1633, doi. 10.1111/j.1365-3040.2009.02040.x
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- Article
Transcriptome sequencing and microarray design for functional genomics in the extremophile Arabidopsis relative Thellungiella salsuginea (Eutrema salsugineum).
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- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-793
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- Article
Expression atlas and comparative coexpression network analyses reveal important genes involved in the formation of lignified cell wall in Brachypodium distachyon.
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- New Phytologist, 2017, v. 215, n. 3, p. 1009, doi. 10.1111/nph.14635
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- Article
Inhibition of polyamine synthesis and uptake reduces tumor progression and prolongs survival in mouse models of neuroblastoma.
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- Science Translational Medicine, 2019, v. 11, n. 477, p. N.PAG, doi. 10.1126/scitranslmed.aau1099
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- Article
Copper: An Intracellular Achilles' Heel Allowing the Targeting of Epigenetics, Kinase Pathways, and Cell Metabolism in Cancer Therapeutics.
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- ChemMedChem, 2021, v. 16, n. 15, p. 2315, doi. 10.1002/cmdc.202100172
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- Article
Transcriptional and metabolic effects of aspartate-glutamate carrier isoform 1 (AGC1) downregulation in mouse oligodendrocyte precursor cells (OPCs).
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- Cellular & Molecular Biology Letters, 2024, v. 29, n. 1, p. 1, doi. 10.1186/s11658-024-00563-z
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- Article
Genomic and transcriptomic analysis of the AP2/ERF superfamily in Vitis vinifera.
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- BMC Genomics, 2010, v. 11, p. 719, doi. 10.1186/1471-2164-11-719
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- Article
Algorithm-driven Artifacts in median polish summarization of Microarray data.
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- BMC Bioinformatics, 2010, v. 11, p. 553, doi. 10.1186/1471-2105-11-553
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- Article
Oxygen sensing in plants is mediated by an N-end rule pathway for protein destabilization.
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- Nature, 2011, v. 479, n. 7373, p. 419, doi. 10.1038/nature10536
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- Article
A History of Repeated Alcohol Intoxication Promotes Cognitive Impairment and Gene Expression Signatures of Disease Progression in the 3xTg Mouse Model of Alzheimer’s Disease.
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- eNeuro, 2023, v. 10, n. 7, p. 1, doi. 10.1523/ENEURO.0456-22.2023
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- Article
Differential submergence tolerance between juvenile and adult Arabidopsis plants involves the ANAC017 transcription factor.
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- Plant Journal, 2020, v. 104, n. 4, p. 979, doi. 10.1111/tpj.14975
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- Article
Single-Cell Sequencing Identifies Master Regulators Affected by Panobinostat in Neuroblastoma Cells.
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- Genes, 2022, v. 13, n. 12, p. 2240, doi. 10.3390/genes13122240
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- Article
Histone Deacetylases (HDACs): Evolution, Specificity, Role in Transcriptional Complexes, and Pharmacological Actionability.
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- Genes, 2020, v. 11, n. 5, p. 556, doi. 10.3390/genes11050556
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- Article
Smoking-associated gene expression alterations in nasal epithelium reveal immune impairment linked to lung cancer risk.
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- Genome Medicine, 2024, v. 16, n. 1, p. 1, doi. 10.1186/s13073-024-01317-4
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- Article
Detection of pan-cancer surface protein biomarkers via a network-based approach on transcriptomics data.
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- Briefings in Bioinformatics, 2022, v. 23, n. 5, p. 1, doi. 10.1093/bib/bbac400
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- Article
Web tools to fight pandemics: the COVID-19 experience.
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- Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 690, doi. 10.1093/bib/bbaa261
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- Article
Detection of subtype-specific breast cancer surface protein biomarkers via a novel transcriptomics approach.
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- Bioscience Reports, 2021, v. 41, n. 12, p. 1, doi. 10.1042/BSR20212218
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- Article
svpluscnv: analysis and visualization of complex structural variation data.
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- Bioinformatics, 2021, v. 37, n. 13, p. 1912, doi. 10.1093/bioinformatics/btaa878
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- Article
Spathial: an R package for the evolutionary analysis of biological data.
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- Bioinformatics, 2020, v. 36, n. 17, p. 4664, doi. 10.1093/bioinformatics/btaa273
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- Article
corto: a lightweight R package for gene network inference and master regulator analysis.
- Published in:
- Bioinformatics, 2020, v. 36, n. 12, p. 3916, doi. 10.1093/bioinformatics/btaa223
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- Article
Geographic and Genomic Distribution of SARS-CoV-2 Mutations.
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- Frontiers in Microbiology, 2020, v. 11, p. 1, doi. 10.3389/fmicb.2020.01800
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- Article
Correction to: VULCAN integrates ChIP-seq with patient-derived co-expression networks to identify GRHL2 as a key co-regulator of ERa at enhancers in breast cancer.
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- 2019
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- Correction Notice
VULCAN integrates ChIP-seq with patient-derived co-expression networks to identify GRHL2 as a key co-regulator of ERa at enhancers in breast cancer.
- Published in:
- Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-019-1698-z
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- Article
Inferring Protein Modulation from Gene Expression Data Using Conditional Mutual Information.
- Published in:
- PLoS ONE, 2014, v. 9, n. 10, p. 1, doi. 10.1371/journal.pone.0109569
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- Article
An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis.
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- PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0085024
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- Article
Preliminary report on severe acute respiratory syndrome coronavirus 2 (SARS‐CoV‐2) Spike mutation T478K.
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- Journal of Medical Virology, 2021, v. 93, n. 9, p. 5638, doi. 10.1002/jmv.27062
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- Article
Coronapp: A web application to annotate and monitor SARS‐CoV‐2 mutations.
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- Journal of Medical Virology, 2021, v. 93, n. 5, p. 3238, doi. 10.1002/jmv.26678
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- Article
Genomic variance of the 2019‐nCoV coronavirus.
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- Journal of Medical Virology, 2020, v. 92, n. 5, p. 522, doi. 10.1002/jmv.25700
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- Article
Correction: Inferring Protein Modulation from Gene Expression Data Using Conditional Mutual Information.
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- 2016
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- Publication type:
- Correction Notice
ARACNe-AP: gene network reverse engineering through adaptive partitioning inference of mutual information.
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- Bioinformatics, 2016, v. 32, n. 14, p. 2233, doi. 10.1093/bioinformatics/btw216
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- Article
Detection and removal of spatial bias in multiwell assays.
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- Bioinformatics, 2016, v. 32, n. 13, p. 1959, doi. 10.1093/bioinformatics/btw092
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- Article
Comparative study of RNA-seq- and Microarray-derived coexpression networks in Arabidopsis thaliana.
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- Bioinformatics, 2013, v. 29, n. 6, p. 717, doi. 10.1093/bioinformatics/btt053
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- Article
DNA Repair Biomarker for Lung Cancer Risk and its Correlation With Airway Cells Gene Expression.
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- JNCI Cancer Spectrum, 2020, v. 4, n. 1, p. N.PAG, doi. 10.1093/jncics/pkz067
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- Article
A G316A Polymorphism in the Ornithine Decarboxylase Gene Promoter Modulates MYCN-Driven Childhood Neuroblastoma.
- Published in:
- Cancers, 2021, v. 13, n. 8, p. 1807, doi. 10.3390/cancers13081807
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- Article
Master Regulator Analysis of the SARS-CoV-2/Human Interactome.
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- Journal of Clinical Medicine, 2020, v. 9, n. 4, p. 982, doi. 10.3390/jcm9040982
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- Article
The R Language: An Engine for Bioinformatics and Data Science.
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- Life (2075-1729), 2022, v. 12, n. 5, p. 648, doi. 10.3390/life12050648
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- Article
Oncoprotein-specific molecular interaction maps (SigMaps) for cancer network analyses.
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- Nature Biotechnology, 2021, v. 39, n. 2, p. 215, doi. 10.1038/s41587-020-0652-7
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- Article
Neuronopathic Gaucher disease models reveal defects in cell growth promoted by Hippo pathway activation.
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- Communications Biology, 2023, v. 6, n. 1, p. 1, doi. 10.1038/s42003-023-04813-2
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- Article
Escalated (Dependent) Oxycodone Self-Administration Is Associated with Cognitive Impairment and Transcriptional Evidence of Neurodegeneration in Human Immunodeficiency Virus (HIV) Transgenic Rats.
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- Viruses (1999-4915), 2022, v. 14, n. 4, p. N.PAG, doi. 10.3390/v14040669
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- Article
CEBPA-regulated lncRNAs, new players in the study of Acute Myeloid Leukemia.
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- Journal of Hematology & Oncology, 2014, v. 7, n. 1, p. 1, doi. 10.1186/s13045-014-0069-1
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- Article
Misexpression of a Chloroplast Aspartyl Protease Leads to Severe Growth Defects and Alters Carbohydrate Metabolism in Arabidopsis.
- Published in:
- Plant Physiology, 2012, v. 160, n. 3, p. 1237, doi. 10.1104/pp.112.204016
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- Publication type:
- Article
Robin: An Intuitive Wizard Application for R-Based Expression Microarray Quality Assessment and Analysis.
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- Plant Physiology, 2010, v. 153, n. 2, p. 642, doi. 10.1104/pp.109.152553
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- Article