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SWIFT clustering analysis of intracellular cytokine staining flow cytometry data of the HVTN 105 vaccine trial reveals high frequencies of HIV-specific CD4+ T cell responses and associations with humoral responses.
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- Frontiers in Immunology, 2024, p. 01, doi. 10.3389/fimmu.2024.1347926
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- Article
SARS-CoV-2 Viral Load in the Nasopharynx at Time of First Infection Among Unvaccinated Individuals: A Secondary Cross-Protocol Analysis of 4 Randomized Trials.
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- JAMA Network Open, 2024, v. 7, n. 5, p. e2412835, doi. 10.1001/jamanetworkopen.2024.12835
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- Article
Realising the potential of correlates of protection for vaccine development, licensure and use: short summary.
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- NPJ Vaccines, 2024, v. 9, n. 1, p. 1, doi. 10.1038/s41541-024-00872-6
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- Article
Author Correction: High monoclonal neutralization titers reduced breakthrough HIV-1 viral loads in the Antibody Mediated Prevention trials.
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- 2024
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- Correction Notice
Study design approaches for future active-controlled HIV prevention trials.
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- Statistical Communications in Infectious Diseases, 2024, v. 16, n. 1, p. 1, doi. 10.1515/scid-2023-0002
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- Article
High monoclonal neutralization titers reduced breakthrough HIV-1 viral loads in the Antibody Mediated Prevention trials.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-43384-y
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- Article
A semiparametric Cox–Aalen transformation model with censored data.
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- Biometrics, 2023, v. 79, n. 4, p. 3111, doi. 10.1111/biom.13895
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- Article
A controlled effects approach to assessing immune correlates of protection.
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- Biostatistics, 2023, v. 24, n. 4, p. 850, doi. 10.1093/biostatistics/kxac024
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- Article
Violence Exposure Among Women in the Sex Industry and Their Children in El Alto, Bolivia: A Comparative Cross-Sectional Study.
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- Violence & Victims, 2023, v. 38, n. 5, p. 736, doi. 10.1891/VV-2021-0002
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- Article
Clinical and Demographic Factors Associated With COVID-19, Severe COVID-19, and SARS-CoV-2 Infection in Adults: A Secondary Cross-Protocol Analysis of 4 Randomized Clinical Trials.
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- JAMA Network Open, 2023, v. 6, n. 7, p. e2323349, doi. 10.1001/jamanetworkopen.2023.23349
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- Article
Semiparametric additive time‐varying coefficients model for longitudinal data with censored time origin.
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- Biometrics, 2023, v. 79, n. 2, p. 695, doi. 10.1111/biom.13610
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- Article
Nonparametric estimation of the causal effect of a stochastic threshold‐based intervention.
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- Biometrics, 2023, v. 79, n. 2, p. 1014, doi. 10.1111/biom.13690
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- Article
Estimation of conditional cumulative incidence functions under generalized semiparametric regression models with missing covariates, with application to analysis of biomarker correlates in vaccine trials.
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- Canadian Journal of Statistics, 2023, v. 51, n. 1, p. 235, doi. 10.1002/cjs.11693
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- Article
Correlates of Protection, Thresholds of Protection, and Immunobridging among Persons with SARS-CoV-2 Infection.
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- Emerging Infectious Diseases, 2023, v. 29, n. 2, p. 381, doi. 10.3201/eid2902.221422
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- Article
Antibody Correlates of Protection From Severe Respiratory Syncytial Virus Disease in a Vaccine Efficacy Trial.
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- Open Forum Infectious Diseases, 2023, v. 10, n. 1, p. 1, doi. 10.1093/ofid/ofac693
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- Article
Study design approaches for future active-controlled HIV prevention trials.
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- Statistical Communications in Infectious Diseases, 2023, v. 15, n. 1, p. 1, doi. 10.1515/scid-2023-0002
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- Article
Rapidly identifying new coronavirus mutations of potential concern in the Omicron variant using an unsupervised learning strategy.
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- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-23342-2
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- Article
Innovative vaccine approaches—a Keystone Symposia report.
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- Annals of the New York Academy of Sciences, 2022, v. 1511, n. 1, p. 59, doi. 10.1111/nyas.14739
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- Article
Optimizing clinical dosing of combination broadly neutralizing antibodies for HIV prevention.
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- PLoS Computational Biology, 2022, v. 18, n. 4, p. 1, doi. 10.1371/journal.pcbi.1010003
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- Article
Evaluation of treatment effect modification by biomarkers measured pre- and post-randomization in the presence of non-monotone missingness.
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- 2022
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- journal article
Evaluating Vaccine Efficacy Against Severe Acute Respiratory Syndrome Coronavirus 2 Infection.
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- Clinical Infectious Diseases, 2022, v. 74, n. 3, p. 544, doi. 10.1093/cid/ciab630
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- Article
Analysis of Neutralizing Antibodies as a Correlate of Instantaneous Risk of Hospitalized Dengue in Placebo Recipients of Dengue Vaccine Efficacy Trials.
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- 2022
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- journal article
Tracking SARS-CoV-2 Spike Protein Mutations in the United States (January 2020—March 2021) Using a Statistical Learning Strategy.
- Published in:
- Viruses (1999-4915), 2022, v. 14, n. 1, p. 9, doi. 10.3390/v14010009
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- Article
Calibration of two validated SARS-CoV-2 pseudovirus neutralization assays for COVID-19 vaccine evaluation.
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- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-03154-6
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- Article
Efficient nonparametric inference on the effects of stochastic interventions under two‐phase sampling, with applications to vaccine efficacy trials.
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- Biometrics, 2021, v. 77, n. 4, p. 1241, doi. 10.1111/biom.13375
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- Article
Super LeArner Prediction of NAb Panels (SLAPNAP): a containerized tool for predicting combination monoclonal broadly neutralizing antibody sensitivity.
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- Bioinformatics, 2021, v. 37, n. 22, p. 4187, doi. 10.1093/bioinformatics/btab398
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- Article
Evaluating the Long-term Efficacy of Coronavirus Disease 2019 (COVID-19) Vaccines.
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- Clinical Infectious Diseases, 2021, v. 73, n. 10, p. 1927, doi. 10.1093/cid/ciab226
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- Article
Evaluating the Efficacy of Coronavirus Disease 2019 Vaccines.
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- Clinical Infectious Diseases, 2021, v. 73, n. 8, p. 1540, doi. 10.1093/cid/ciaa1863
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- Article
Mathematical Modeling of Vaccines That Prevent SARS-CoV-2 Transmission.
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- Viruses (1999-4915), 2021, v. 13, n. 10, p. 1921, doi. 10.3390/v13101921
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- Article
Semiparametric regression analysis of partly interval‐censored failure time data with application to an AIDS clinical trial.
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- Statistics in Medicine, 2021, v. 40, n. 20, p. 4376, doi. 10.1002/sim.9035
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- Article
Immunobridging efficacy of a tetravalent dengue vaccine against dengue and against hospitalized dengue from children/adolescents to adults in highly endemic countries.
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- Transactions of the Royal Society of Tropical Medicine & Hygiene, 2021, v. 115, n. 7, p. 750, doi. 10.1093/trstmh/traa154
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- Article
Sieve analysis to understand how SARS-CoV-2 diversity can impact vaccine protection.
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- PLoS Pathogens, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.ppat.1009406
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- Article
Innate immune signatures to a partially-efficacious HIV vaccine predict correlates of HIV-1 infection risk.
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- PLoS Pathogens, 2021, p. 1, doi. 10.1371/journal.ppat.1009363
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Nonparametric variable importance assessment using machine learning techniques.
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- Biometrics, 2021, v. 77, n. 1, p. 9, doi. 10.1111/biom.13392
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- Article
Rejoinder to "Nonparametric variable importance assessment using machine learning techniques".
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- Biometrics, 2021, v. 77, n. 1, p. 28, doi. 10.1111/biom.13389
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- Article
CMV viral load kinetics as surrogate endpoints after allogeneic transplantation.
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- 2021
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- journal article
Prospects for a safe COVID-19 vaccine.
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- Science Translational Medicine, 2020, v. 12, n. 568, p. 1, doi. 10.1126/scitranslmed.abe0948
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- Article
Analysis of the time-varying Cox model for the cause-specific hazard functions with missing causes.
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- 2020
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- journal article
A regularized estimation approach for case‐cohort periodic follow‐up studies with an application to HIV vaccine trials.
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- Biometrical Journal, 2020, v. 62, n. 5, p. 1176, doi. 10.1002/bimj.201900180
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- Article
Designing a Study of Correlates of Risk for Ebola Vaccination.
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- American Journal of Epidemiology, 2020, v. 189, n. 8, p. 747, doi. 10.1093/aje/kwaa001
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- Article
A hybrid approach for the stratified mark‐specific proportional hazards model with missing covariates and missing marks, with application to vaccine efficacy trials.
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- Journal of the Royal Statistical Society: Series C (Applied Statistics), 2020, v. 69, n. 4, p. 791, doi. 10.1111/rssc.12417
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- Article
Inference on treatment effect modification by biomarker response in a three-phase sampling design.
- Published in:
- 2020
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- Publication type:
- journal article
Microneutralization assay titer correlates analysis in two phase 3 trials of the CYD-TDV tetravalent dengue vaccine in Asia and Latin America.
- Published in:
- PLoS ONE, 2020, v. 15, n. 6, p. 1, doi. 10.1371/journal.pone.0234236
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- Article
Simultaneous Inference of Treatment Effect Modification by Intermediate Response Endpoint Principal Strata with Application to Vaccine Trials.
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- International Journal of Biostatistics, 2020, v. 16, n. 1, p. 1, doi. 10.1515/ijb-2018-0058
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- Article
Safety and immune responses after a 12-month booster in healthy HIV-uninfected adults in HVTN 100 in South Africa: A randomized double-blind placebo-controlled trial of ALVAC-HIV (vCP2438) and bivalent subtype C gp120/MF59 vaccines.
- Published in:
- 2020
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- Publication type:
- journal article
Mathematical modeling to reveal breakthrough mechanisms in the HIV Antibody Mediated Prevention (AMP) trials.
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- PLoS Computational Biology, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.pcbi.1007626
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- Article
HIV-1 Vaccine Sequences Impact V1V2 Antibody Responses: A Comparison of Two Poxvirus Prime gp120 Boost Vaccine Regimens.
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- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-57491-z
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- Article
Methods for comparing durability of immune responses between vaccine regimens in early-phase trials.
- Published in:
- 2020
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- journal article
Vaccine-Induced Antibodies Mediate Higher Antibody-Dependent Cellular Cytotoxicity After Interleukin-15 Pretreatment of Natural Killer Effector Cells.
- Published in:
- Frontiers in Immunology, 2019, v. 10, p. 1, doi. 10.3389/fimmu.2019.02741
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- Article
Antigenic competition in CD4<sup>+</sup> T cell responses in a randomized, multicenter, double-blind clinical HIV vaccine trial.
- Published in:
- Science Translational Medicine, 2019, v. 11, n. 519, p. 1, doi. 10.1126/scitranslmed.aaw1673
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- Article