Works by Giannone, Richard J.

Results: 34

Gene targets for engineering osmotolerance in Caldicellulosiruptor bescii.

Published in:

Biotechnology for Biofuels, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s13068-020-01690-3

By:

Sander, Kyle B.;
Chung, Daehwan;
Klingeman, Dawn M.;
Giannone, Richard J.;
Rodriguez, Miguel;
Whitham, Jason;
Hettich, Robert L.;
Davison, Brian H.;
Westpheling, Janet;
Brown, Steven D.

Publication type:

Article

Telomere Sister Chromatid Exchange in Telomerase Deficient Murine Cells.

Published in:

Cell Cycle, 2005, v. 4, n. 10, p. 1320, doi. 10.4161/cc.4.10.2075

By:

Yisong Wang;
Giannone, Richard J.;
Liu, Yie

Publication type:

Article

Microbiota functional activity biosensors for characterizing nutrient metabolism in vivo.

Published in:

eLife, 2021, p. 1, doi. 10.7554/eLife.64478

By:

Wesener, Darryl A.;
Beller, Zachary W.;
Peters, Samantha L.;
Rajabi, Amir;
Dimartino, Gianluca;
Giannone, Richard J.;
Hettich, Robert L.;
Gordon, Jeffrey I.

Publication type:

Article

Clostridium thermocellum ATCC27405 transcriptomic, metabolomic and proteomic profiles after ethanol stress.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 336, doi. 10.1186/1471-2164-13-336

By:

Shihui Yang;
Giannone, Richard J.;
Dice, Lezlee;
Zamin K.Yang;
Engle, Nancy L.;
Tschaplinski, Timothy J.;
Hettich, Robert L.;
Brown, Steven D.

Publication type:

Article

Scavenging organic nitrogen and remodelling lipid metabolism are key survival strategies adopted by the endophytic fungi, Serendipita vermifera and Serendipita bescii to alleviate nitrogen and phosphorous starvation in vitro.

Published in:

Environmental Microbiology Reports, 2019, v. 11, n. 4, p. 548, doi. 10.1111/1758-2229.12757

By:

Ray, Prasun;
Abraham, Paul E.;
Guo, Yingqing;
Giannone, Richard J.;
Engle, Nancy L.;
Yang, Zamin K.;
Jacobson, Daniel;
Hettich, Robert L.;
Tschaplinski, Timothy J.;
Craven, Kelly D.

Publication type:

Article

Identification, cloning and characterization of SpEX exotoxin produced by Staphylococcus pseudintermedius.

Published in:

PLoS ONE, 2019, v. 14, n. 7, p. 1, doi. 10.1371/journal.pone.0220301

By:

Abouelkhair, Mohamed A.;
Bemis, David A.;
Giannone, Richard J.;
Frank, Linda A.;
Kania, Stephen A.

Publication type:

Article

Characterization of a leukocidin identified in Staphylococcus pseudintermedius.

Published in:

PLoS ONE, 2018, v. 13, n. 9, p. 1, doi. 10.1371/journal.pone.0204450

By:

Abouelkhair, Mohamed A.;
Bemis, David A.;
Giannone, Richard J.;
Frank, Linda A.;
Kania, Stephen A.

Publication type:

Article

Clostridium autoethanogenum alters cofactor synthesis, redox metabolism, and lysine-acetylation in response to elevated H<sub>2</sub>:CO feedstock ratios for enhancing carbon capture efficiency.

Published in:

Biotechnology for Biofuels & Bioproducts, 2024, v. 17, n. 1, p. 1, doi. 10.1186/s13068-024-02554-w

By:

Davin, Megan E.;
Thompson, R. Adam;
Giannone, Richard J.;
Mendelson, Lucas W.;
Carper, Dana L.;
Martin, Madhavi Z.;
Martin, Michael E.;
Engle, Nancy L.;
Tschaplinski, Timothy J.;
Brown, Steven D.;
Hettich, Robert L.

Publication type:

Article

Horizontal transfer of a pathway for coumarate catabolism unexpectedly inhibits purine nucleotide biosynthesis.

Published in:

Molecular Microbiology, 2019, v. 112, n. 6, p. 1784, doi. 10.1111/mmi.14393

By:

Close, Dan M.;
Cooper, Connor J.;
Wang, Xingyou;
Chirania, Payal;
Gupta, Madhulika;
Ossyra, John R.;
Giannone, Richard J.;
Engle, Nancy;
Tschaplinski, Timothy J.;
Smith, Jeremy C.;
Hedstrom, Lizbeth;
Parks, Jerry M.;
Michener, Joshua K.

Publication type:

Article

Coculture with hemicellulose-fermenting microbes reverses inhibition of corn fiber solubilization by Clostridium thermocellum at elevated solids loadings.

Published in:

Biotechnology for Biofuels, 2021, v. 14, n. 1, p. 1, doi. 10.1186/s13068-020-01867-w

By:

Beri, Dhananjay;
Herring, Christopher D.;
Blahova, Sofie;
Poudel, Suresh;
Giannone, Richard J.;
Hettich, Robert L.;
Lynd, Lee R.

Publication type:

Article

Molecular basis of surface anchored protein A deficiency in the Staphylococcus aureus strain Wood 46.

Published in:

PLoS ONE, 2017, v. 12, n. 8, p. 1, doi. 10.1371/journal.pone.0183913

By:

Balachandran, Manasi;
Giannone, Richard J.;
Bemis, David A.;
Kania, Stephen A.

Publication type:

Article

The effects of micronutrient deficiencies on bacterial species from the human gut microbiota.

Published in:

Science Translational Medicine, 2017, v. 9, n. 390, p. 1, doi. 10.1126/scitranslmed.aal4069

By:

Hibberd, Matthew C.;
Meng Wu;
Rodionov, Dmitry A.;
Xiaoqing Li;
Jiye Cheng;
Griffin, Nicholas W.;
Barratt, Michael J.;
Giannone, Richard J.;
Hettich, Robert L.;
Osterman, Andrei L.;
Gordon, Jeffrey I.

Publication type:

Article

Carbon-negative production of acetone and isopropanol by gas fermentation at industrial pilot scale.

Published in:

Nature Biotechnology, 2022, v. 40, n. 3, p. 335, doi. 10.1038/s41587-021-01195-w

By:

Liew, Fungmin Eric;
Nogle, Robert;
Abdalla, Tanus;
Rasor, Blake J.;
Canter, Christina;
Jensen, Rasmus O.;
Wang, Lan;
Strutz, Jonathan;
Chirania, Payal;
De Tissera, Sashini;
Mueller, Alexander P.;
Ruan, Zhenhua;
Gao, Allan;
Tran, Loan;
Engle, Nancy L.;
Bromley, Jason C.;
Daniell, James;
Conrado, Robert;
Tschaplinski, Timothy J.;
Giannone, Richard J.

Publication type:

Article

Transcriptomic and proteomic changes from medium supplementation and strain evolution in high-yielding Clostridium thermocellum strains.

Published in:

Journal of Industrial Microbiology & Biotechnology, 2018, v. 45, n. 11, p. 1007, doi. 10.1007/s10295-018-2073-x

By:

Papanek, Beth;
O’Dell, Kaela B.;
Manga, Punita;
Giannone, Richard J.;
Klingeman, Dawn M.;
Hettich, Robert L.;
Brown, Steven D.;
Guss, Adam M.

Publication type:

Article

Integrated Proteomics and Lipidomics Reveal That the Swarming Motility of Paenibacillus polymyxa Is Characterized by Phospholipid Modification, Surfactant Deployment, and Flagellar Specialization Relative to Swimming Motility.

Published in:

Frontiers in Microbiology, 2019, v. 10, p. 1, doi. 10.3389/fmicb.2019.02594

By:

Poudel, Suresh;
Giannone, Richard J.;
Farmer, Abigail T.;
Campagna, Shawn R.;
Bible, Amber N.;
Morrell-Falvey, Jennifer L.;
Elkins, James G.;
Hettich, Robert L.

Publication type:

Article

Expression of benzoyl-CoA metabolism genes in the lignocellulolytic host Caldicellulosiruptor bescii.

Published in:

AMB Express, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1186/s13568-019-0783-8

By:

Sander, Kyle;
Yeary, Meredith;
Mahan, Kristina;
Whitham, Jason;
Giannone, Richard J.;
Brown, Steven D.;
Rodriguez, Miguel;
Graham, David E.;
Hankoua, Bertrand

Publication type:

Article

Genomics-informed isolation and characterization of a symbiotic Nanoarchaeota system from a terrestrial geothermal environment.

Published in:

Nature Communications, 2016, v. 7, n. 7, p. 12115, doi. 10.1038/ncomms12115

By:

Wurch, Louie;
Giannone, Richard J.;
Belisle, Bernard S.;
Swift, Carolyn;
Utturkar, Sagar;
Hettich, Robert L.;
Reysenbach, Anna-Louise;
Podar, Mircea

Publication type:

Article

Corrigendum: Pentose sugars inhibit metabolism and increase expression of an AgrD-type cyclic pentapeptide in Clostridium thermocellum.

Published in:

Scientific Reports, 2017, p. 46875, doi. 10.1038/srep46875

By:

Verbeke, Tobin J.;
Giannone, Richard J.;
Klingeman, Dawn M.;
Engle, Nancy L.;
Rydzak, Thomas;
Guss, Adam M.;
Tschaplinski, Timothy J.;
Brown, Steven D.;
Hettich, Robert L.;
Elkins, James G.

Publication type:

Article

Specialized activities and expression differences for Clostridium thermocellum biofilm and planktonic cells.

Published in:

Scientific Reports, 2017, p. 43583, doi. 10.1038/srep43583

By:

Dumitrache, Alexandru;
Klingeman, Dawn M.;
Natzke, Jace;
Rodriguez Jr, Miguel;
Giannone, Richard J.;
Hettich, Robert L.;
Davison, Brian H.;
Brown, Steven D.

Publication type:

Article

Pentose sugars inhibit metabolism and increase expression of an AgrD-type cyclic pentapeptide in Clostridium thermocellum.

Published in:

Scientific Reports, 2017, p. 43355, doi. 10.1038/srep43355

By:

Verbeke, Tobin J.;
Giannone, Richard J.;
Klingeman, Dawn M.;
Engle, Nancy L.;
Rydzak, Thomas;
Guss, Adam M.;
Tschaplinski, Timothy J.;
Brown, Steven D.;
Hettich, Robert L.;
Elkins, James G.

Publication type:

Article

Proteomic Characterization of Cellular and Molecular Processes that Enable the Nanoarchaeum equitans-Ignicoccus hospitalis Relationship.

Published in:

PLoS ONE, 2011, v. 6, n. 8, p. 1, doi. 10.1371/journal.pone.0022942

By:

Giannone, Richard J.;
Huber, Harald;
Karpinets, Tatiana;
Heimerl, Thomas;
Küper, Ulf;
Rachel, Reinhard;
Keller, Martin;
Hettich, Robert L.;
Podar, Mircea

Publication type:

Article

The Protein Network Surrounding the Human Telomere Repeat Binding Factors TRF1, TRF2, and POT1.

Published in:

PLoS ONE, 2010, v. 5, n. 8, p. 1, doi. 10.1371/journal.pone.0012407

By:

Giannone, Richard J.;
McDonald, Hayes W.;
Hurst, Gregory B.;
Rong-Fong Shen;
Yisong Wang;
Yie Liu

Publication type:

Article

Transcriptomic and proteomic insights into innate immunity and adaptations to a symbiotic lifestyle in the gutless marine worm Olavius algarvensis.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3293-y

By:

Wippler, Juliane;
Kleiner, Manuel;
Lott, Christian;
Gruhl, Alexander;
Abraham, Paul E.;
Giannone, Richard J.;
Young, Jacque C.;
Hettich, Robert L.;
Dubilier, Nicole

Publication type:

Article

Impact of Fatty-Acid Labeling of Bacillus subtilis Membranes on the Cellular Lipidome and Proteome.

Published in:

Frontiers in Microbiology, 2020, v. 11, p. 1, doi. 10.3389/fmicb.2020.00914

By:

Nickels, Jonathan D.;
Poudel, Suresh;
Chatterjee, Sneha;
Farmer, Abigail;
Cordner, Destini;
Campagna, Shawn R.;
Giannone, Richard J.;
Hettich, Robert L.;
Myles, Dean A. A.;
Standaert, Robert F.;
Katsaras, John;
Elkins, James G.

Publication type:

Article

Experimental validation that human microbiome phages use alternative genetic coding.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-32979-6

By:

Peters, Samantha L.;
Borges, Adair L.;
Giannone, Richard J.;
Morowitz, Michael J.;
Banfield, Jillian F.;
Hettich, Robert L.

Publication type:

Article

Metaproteomics reveals enzymatic strategies deployed by anaerobic microbiomes to maintain lignocellulose deconstruction at high solids.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31433-x

By:

Chirania, Payal;
Holwerda, Evert K.;
Giannone, Richard J.;
Liang, Xiaoyu;
Poudel, Suresh;
Ellis, Joseph C.;
Bomble, Yannick J.;
Hettich, Robert L.;
Lynd, Lee R.

Publication type:

Article

The diversity and specificity of the extracellular proteome in the cellulolytic bacterium <italic>Caldicellulosiruptor bescii</italic> is driven by the nature of the cellulosic growth substrate.

Published in:

Biotechnology for Biofuels, 2018, v. 11, p. 1, doi. 10.1186/s13068-018-1076-1

By:

Poudel, Suresh;
Giannone, Richard J.;
Basen, Mirko;
Nookaew, Intawat;
Poole, Farris L.;
Kelly, Robert M.;
Adams, Michael W. W.;
Hettich, Robert L.

Publication type:

Article

Deletion of the hfsB gene increases ethanol production in Thermoanaerobacterium saccharolyticum and several other thermophilic anaerobic bacteria.

Published in:

Biotechnology for Biofuels, 2017, v. 10, p. 1, doi. 10.1186/s13068-017-0968-9

By:

Eminoğlu, Ayşenur;
Murphy, Sean Jean-Loup;
Maloney, Marybeth;
Lanahan, Anthony;
Giannone, Richard J.;
Hettich, Robert L.;
Tripathi, Shital A.;
Beldüz, Ali Osman;
Lynd, Lee R.;
Olson, Daniel G.

Publication type:

Article

Integrated omics analyses reveal the details of metabolic adaptation of Clostridium thermocellum to lignocellulose-derived growth inhibitors released during the deconstruction of switchgrass.

Published in:

Biotechnology for Biofuels, 2017, v. 10, p. 1, doi. 10.1186/s13068-016-0697-5

By:

Poudel, Suresh;
Giannone, Richard J.;
Rodriguez Jr., Miguel;
Raman, Babu;
Martin, Madhavi Z.;
Engle, Nancy L.;
Mielenz, Jonathan R.;
Nookaew, Intawat;
Brown, Steven D.;
Tschaplinski, Timothy J.;
Ussery, David;
Hettich, Robert L.

Publication type:

Article

Improved growth rate in Clostridium thermocellum hydrogenase mutant via perturbed sulfur metabolism.

Published in:

Biotechnology for Biofuels, 2017, v. 10, p. 1, doi. 10.1186/s13068-016-0684-x

By:

Biswas, Ranjita;
Wilson, Charlotte M.;
Giannone, Richard J.;
Klingeman, Dawn M.;
Rydzak, Thomas;
Shah, Manesh B.;
Hettich, Robert L.;
Brown, Steven D.;
Guss, Adam M.

Publication type:

Article

Simultaneous achievement of high ethanol yield and titer in Clostridium thermocellum.

Published in:

Biotechnology for Biofuels, 2016, v. 9, p. 1, doi. 10.1186/s13068-016-0528-8

By:

Liang Tian;
Papanek, Beth;
Olson, Daniel G.;
Rydzak, Thomas;
Holwerda, Evert K.;
Tianyong Zheng;
Jilai Zhou;
Maloney, Marybeth;
Jiang, Nannan;
Giannone, Richard J.;
Hettich, Robert L.;
Guss, Adam M.;
Lynd, Lee R.

Publication type:

Article

Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-27542-8

By:

Van Den Bossche, Tim;
Kunath, Benoit J.;
Schallert, Kay;
Schäpe, Stephanie S.;
Abraham, Paul E.;
Armengaud, Jean;
Arntzen, Magnus Ø.;
Bassignani, Ariane;
Benndorf, Dirk;
Fuchs, Stephan;
Giannone, Richard J.;
Griffin, Timothy J.;
Hagen, Live H.;
Halder, Rashi;
Henry, Céline;
Hettich, Robert L.;
Heyer, Robert;
Jagtap, Pratik;
Jehmlich, Nico;
Jensen, Marlene

Publication type:

Article

Identifying Candidate Biomarkers of Ionizing Radiation in Human Pulmonary Microvascular Lumens Using Microfluidics—A Pilot Study.

Published in:

Micromachines, 2021, v. 12, n. 8, p. 904, doi. 10.3390/mi12080904

By:

Millet, Larry J.;
Giannone, Richard J.;
Greenwood, Michael S.;
Foster, Carmen M.;
O'Neil, Kathleen M.;
Braatz, Alexander D.;
Davern, Sandra M.

Publication type:

Article

Life on the edge: functional genomic response of Ignicoccus hospitalis to the presence of Nanoarchaeum equitans.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 1, p. 101, doi. 10.1038/ismej.2014.112

By:

Giannone, Richard J;
Wurch, Louie L;
Heimerl, Thomas;
Martin, Stanton;
Yang, Zamin;
Huber, Harald;
Rachel, Reinhard;
Hettich, Robert L;
Podar, Mircea

Publication type:

Article