Works matching AU Getz, Gad

Results: 76

Epidermal Growth Factor Receptor Activation in Glioblastoma through Novel Missense Mutations in the Extracellular Domain.

Published in:

PLoS Medicine, 2006, v. 3, n. 12, p. 2264, doi. 10.1371/journal.pmed.0030485

By:

Lee, Jeffrey C.;
Vivanco, Igor;
Beroukhim, Rameen;
Huang, Julie H. Y.;
Feng, Whei L.;
DeBiasi, Ralph M.;
Yoshimoto, Koji;
King, Jennifer C.;
Phioanh Nghiemphu;
Yuza, Yuki;
Qing Xu;
Greulich, Heidi;
Thomas, Roman K.;
Paez, J. Guillermo;
Peck, Timothy C.;
Linhart, David J.;
Glatt, Karen A.;
Getz, Gad;
Onofrio, Robert;
Ziaugra, Liuda

Publication type:

Article

Oncotator: Cancer Variant Annotation Tool.

Published in:

Human Mutation, 2015, v. 36, n. 4, p. E2423, doi. 10.1002/humu.22771

By:

Ramos, Alex H.;
Lichtenstein, Lee;
Gupta, Manaswi;
Lawrence, Michael S.;
Pugh, Trevor J.;
Saksena, Gordon;
Meyerson, Matthew;
Getz, Gad

Publication type:

Article

PRADA: pipeline for RNA sequencing data analysis.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2224, doi. 10.1093/bioinformatics/btu169

By:

Torres-García, Wandaliz;
Zheng, Siyuan;
Sivachenko, Andrey;
Vegesna, Rahulsimham;
Wang, Qianghu;
Yao, Rong;
Berger, Michael F.;
Weinstein, John N.;
Getz, Gad;
Verhaak, Roel G.W.

Publication type:

Article

Nozzle: a report generation toolkit for data analysis pipelines.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 1089, doi. 10.1093/bioinformatics/btt085

By:

Gehlenborg, Nils;
Noble, Michael S.;
Getz, Gad;
Chin, Lynda;
Park, Peter J.

Publication type:

Article

RNA-SeQC: RNA-seq metrics for quality control and process optimization.

Published in:

Bioinformatics, 2012, v. 28, n. 11, p. 1530, doi. 10.1093/bioinformatics/bts196

By:

DeLuca, David S.;
Levin, Joshua Z.;
Sivachenko, Andrey;
Fennell, Timothy;
Nazaire, Marc-Danie;
Williams, Chris;
Reich, Michael;
Winckler, Wendy;
Getz, Gad

Publication type:

Article

ContEst: estimating cross-contamination of human samples in next-generation sequencing data.

Published in:

Bioinformatics, 2011, v. 27, n. 18, p. 2601, doi. 10.1093/bioinformatics/btr446

By:

Cibulskis, Kristian;
McKenna, Aaron;
Fennell, Tim;
Banks, Eric;
DePristo, Mark;
Getz, Gad

Publication type:

Article

A vast resource of allelic expression data spanning human tissues.

Published in:

Genome Biology, 2020, v. 21, p. 1, doi. 10.1186/s13059-020-02122-z

By:

Castel, Stephane E.;
Aguet, François;
Mohammadi, Pejman;
GTEx Consortium;
Anand, Shankara;
Ardlie, Kristin G.;
Gabriel, Stacey;
Getz, Gad A.;
Graubert, Aaron;
Hadley, Kane;
Handsaker, Robert E.;
Huang, Katherine H.;
Kashin, Seva;
Li, Xiao;
MacArthur, Daniel G.;
Meier, Samuel R.;
Nedzel, Jared L.;
Nguyen, Duyen T.;
Segrè, Ayellet V.;
Todres, Ellen

Publication type:

Article

The genomic landscape of juvenile myelomonocytic leukemia.

Published in:

Nature Genetics, 2015, v. 47, n. 11, p. 1326, doi. 10.1038/ng.3400

By:

Toretsky, Jeffrey A;
Olshen, Adam B;
Getz, Gad;
Gruber, Tanja A;
Golub, Todd R;
Stegmaier, Kimberly;
Loh, Mignon L;
Stieglitz, Elliot;
Chang, Tiffany Y;
Gelston, Laura C;
Esquivel, Emilio;
Yu, Ariel;
Archambeault, Sophie L;
Beckman, Kyle;
Cooper, Todd;
Dahl, Gary V;
Emanuel, Peter D;
Liu, Y Lucy;
Fluchel, Mark N;
Goyal, Rakesh K

Publication type:

Article

An APOBEC3A hypermutation signature is distinguishable from the signature of background mutagenesis by APOBEC3B in human cancers.

Published in:

Nature Genetics, 2015, v. 47, n. 9, p. 1067, doi. 10.1038/ng.3378

By:

Sterling, Joan F;
Malc, Ewa P;
Fargo, David C;
Mieczkowski, Piotr A;
Kwiatkowski, David J;
Saini, Natalie;
Kim, Jaegil;
Roberts, Steven A;
Getz, Gad;
Chan, Kin;
Gordenin, Dmitry A;
Klimczak, Leszek J

Publication type:

Article

Pan-cancer network analysis identifies combinations of rare somatic mutations across pathways and protein complexes.

Published in:

Nature Genetics, 2015, v. 47, n. 2, p. 106, doi. 10.1038/ng.3168

By:

Leiserson, Mark D M;
Raphael, Benjamin J;
Thomas, Jacob L;
Vandin, Fabio;
Ding, Li;
Eldridge, Jonathan V;
Kim, Younhun;
McLellan, Michael;
Gonzalez-Perez, Abel;
Cheng, Yuwei;
Dobson, Jason R;
Niu, Beifang;
Ryslik, Gregory A;
Lopez-Bigas, Nuria;
Wu, Hsin-Ta;
Getz, Gad;
Papoutsaki, Alexandra;
Lawrence, Michael S;
Tamborero, David

Publication type:

Article

RNF43 is frequently mutated in colorectal and endometrial cancers.

Published in:

Nature Genetics, 2014, v. 46, n. 12, p. 1264, doi. 10.1038/ng.3127

By:

Giannakis, Marios;
Van Allen, Eliezer M;
Hahn, William C;
Garraway, Levi A;
Fuchs, Charles S;
Hodis, Eran;
Jasmine Mu, Xinmeng;
Rosenbluh, Joseph;
Yamauchi, Mai;
Qian, Zhi Rong;
Cibulskis, Kristian;
Saksena, Gordon;
Lawrence, Michael S;
Gabriel, Stacey B;
Nishihara, Reiko;
Lander, Eric S;
Getz, Gad;
Ogino, Shuji

Publication type:

Article

Pan-cancer patterns of somatic copy number alteration.

Published in:

Nature Genetics, 2013, v. 45, n. 10, p. 1134, doi. 10.1038/ng.2760

By:

Zack, Travis I;
Schumacher, Steven E;
Carter, Scott L;
Cherniack, Andrew D;
Saksena, Gordon;
Tabak, Barbara;
Lawrence, Michael S;
Zhang, Cheng-Zhong;
Wala, Jeremiah;
Mermel, Craig H;
Sougnez, Carrie;
Gabriel, Stacey B;
Hernandez, Bryan;
Shen, Hui;
Laird, Peter W;
Getz, Gad;
Meyerson, Matthew;
Beroukhim, Rameen

Publication type:

Article

An APOBEC cytidine deaminase mutagenesis pattern is widespread in human cancers.

Published in:

Nature Genetics, 2013, v. 45, n. 9, p. 970, doi. 10.1038/ng.2702

By:

Roberts, Steven A;
Lawrence, Michael S;
Klimczak, Leszek J;
Grimm, Sara A;
Fargo, David;
Stojanov, Petar;
Kiezun, Adam;
Kryukov, Gregory V;
Carter, Scott L;
Saksena, Gordon;
Harris, Shawn;
Shah, Ruchir R;
Resnick, Michael A;
Getz, Gad;
Gordenin, Dmitry A

Publication type:

Article

Genomic sequencing of meningiomas identifies oncogenic SMO and AKT1 mutations.

Published in:

Nature Genetics, 2013, v. 45, n. 3, p. 285, doi. 10.1038/ng.2526

By:

Brastianos, Priscilla K;
Horowitz, Peleg M;
Santagata, Sandro;
Jones, Robert T;
McKenna, Aaron;
Getz, Gad;
Ligon, Keith L;
Palescandolo, Emanuele;
Van Hummelen, Paul;
Ducar, Matthew D;
Raza, Alina;
Sunkavalli, Ashwini;
MacConaill, Laura E;
Stemmer-Rachamimov, Anat O;
Louis, David N;
Hahn, William C;
Dunn, Ian F;
Beroukhim, Rameen

Publication type:

Article

Subtype-specific genomic alterations define new targets for soft-tissue sarcoma therapy.

Published in:

Nature Genetics, 2010, v. 42, n. 8, p. 715, doi. 10.1038/ng.619

By:

Barretina, Jordi;
Taylor, Barry S.;
Banerji, Shantanu;
Ramos, Alexis H.;
Lagos-Quintana, Mariana;
DeCarolis, Penelope L.;
Shah, Kinjal;
Socci, Nicholas D.;
Weir, Barbara A.;
Ho, Alan;
Chiang, Derek Y.;
Reva, Boris;
Mermel, Craig H.;
Getz, Gad;
Antipin, Yevgenyi;
Beroukhim, Rameen;
Major, John E.;
Hatton, Charles;
Nicoletti, Richard;
Hanna, Megan

Publication type:

Article

SOX2 is an amplified lineage-survival oncogene in lung and esophageal squamous cell carcinomas.

Published in:

Nature Genetics, 2009, v. 41, n. 11, p. 1238, doi. 10.1038/ng.465

By:

Bass, Adam J.;
Watanabe, Hideo;
Mermel, Craig H.;
Soyoung Yu;
Perner, Sven;
Verhaak, Roel G.;
So Young Kim;
Wardwell, Leslie;
Tamayo, Pablo;
Gat-Viks, Irit;
Ramos, Alex H.;
Woo, Michele S.;
Weir, Barbara A.;
Getz, Gad;
Beroukhim, Rameen;
O'Kelly, Michael;
Dutt, Amit;
Rozenblatt-Rosen, Orit;
Dziunycz, Piotr;
Komisarof, Justin

Publication type:

Article

Primary and secondary target genes regulated by p53 identified by DNA microarrays.

Published in:

2001

By:

Kannan, Karuppiah;
Amariglio, Ninette;
Rechavi, Gideon;
Yaakov, Yasmin;
Kaminski, Naftali;
Getz, Gad;
Domany, Eitan;
Givol, David

Publication type:

Abstract

Computational Pathology.

Published in:

2014

By:

Louis, David N.;
Gerber, Georg K.;
Baron, Jason M.;
Bry, Lyn;
Dighe, Anand S.;
Getz, Gad;
Higgins, John M.;
Kuo, Frank C.;
Lane, William J.;
Michaelson, James S.;
Le, Long P.;
Mermel, Craig H.;
Gilbertson, John R.;
Golden, Jeffrey A.

Publication type:

Editorial

High-resolution genomic and expression analyses of copy number alterations in breast tumors.

Published in:

Genes, Chromosomes & Cancer, 2008, v. 47, n. 6, p. 530, doi. 10.1002/gcc.20558

By:

Haverty, Peter M.;
Fridlyand, Jane;
Li, Li;
Getz, Gad;
Beroukhim, Rameen;
Lohr, Scott;
Wu, Thomas D.;
Cavet, Guy;
Zhang, Zemin;
Chant, John

Publication type:

Article

Data analysis: Create a cloud commons.

Published in:

2015

By:

Stein, Lincoln D.;
Knoppers, Bartha M.;
Campbell, Peter;
Getz, Gad;
Korbel, Jan O.

Publication type:

Opinion

F2CS: FSSP to CATH and SCOP prediction server.

Published in:

Bioinformatics, 2004, v. 20, n. 13, p. 2150, doi. 10.1093/bioinformatics/bth208

By:

Gad Getz;
Alina Starovolsky;
Eytan Domany

Publication type:

Article

A Pan-Cancer Analysis of Transcriptome Changes Associated with Somatic Mutations in <i>U2AF1</i> Reveals Commonly Altered Splicing Events.

Published in:

PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0087361

By:

Brooks, Angela N.;
Choi, Peter S.;
de Waal, Luc;
Sharifnia, Tanaz;
Imielinski, Marcin;
Saksena, Gordon;
Pedamallu, Chandra Sekhar;
Sivachenko, Andrey;
Rosenberg, Mara;
Chmielecki, Juliann;
Lawrence, Michael S.;
DeLuca, David S.;
Getz, Gad;
Meyerson, Matthew

Publication type:

Article

Integrated Analyses of microRNAs Demonstrate Their Widespread Influence on Gene Expression in High-Grade Serous Ovarian Carcinoma.

Published in:

PLoS ONE, 2012, v. 7, n. 3, p. 1, doi. 10.1371/journal.pone.0034546

By:

Creighton, Chad J.;
Hernandez-Herrera, Anadulce;
Jacobsen, Anders;
Levine, Douglas A.;
Mankoo, Parminder;
Schultz, Nikolaus;
Ying Du;
Yiqun Zhang;
Larsson, Erik;
Sheridan, Robert;
Xiao, Weimin;
Spellman, Paul T.;
Getz, Gad;
Wheeler, David A.;
Perou, Charles M.;
Gibbs, Richard A.;
Sander, Chris;
Hayes, D. Neil;
Gunaratne, Preethi H.

Publication type:

Article

Design principle of gene expression used by human stem cells: implication for pluripotency.

Published in:

FASEB Journal, 2005, v. 19, n. 1, p. 147, doi. 10.1096/fj.04-2417fje

By:

Golan-Mashiach, Michal;
Dazard, Jean-Eudes;
Gerecht-Nir, Sharon;
Amariglio, Ninette;
Fisher, Tamar;
Jacob-Hirsch, Jasmine;
Bielorai, Bella;
Osenberg, Sivan;
Barad, Omer;
Getz, Gad;
Toren, Amos;
Rechavi, Gideon;
Itskovitz-Eldor, Joseph;
Domany, Eytan;
Givol, David

Publication type:

Article

Dramatic Response of BRAF V600E Mutant Papillary Craniopharyngioma to Targeted Therapy.

Published in:

2016

By:

Brastianos, Priscilla K.;
Shankar, Ganesh M.;
Gill, Corey M.;
Taylor-Weiner, Amaro;
Nayyar, Naema;
Panka, David J.;
Sullivan, Ryan J.;
Frederick, Dennie T.;
Abedalthagafi, Malak;
Jones, Pamela S.;
Dunn, Ian F.;
Nahed, Brian V.;
Romero, Javier M.;
Louis, David N.;
Getz, Gad;
Cahill, Daniel P.;
Santagata, Sandro;
Curry Jr, William T.;
Barker, Fred G.;
Curry, William T Jr

Publication type:

journal article

Distinct evolutionary paths in chronic lymphocytic leukemia during resistance to the graft-versus-leukemia effect.

Published in:

Science Translational Medicine, 2020, v. 12, n. 561, p. 1, doi. 10.1126/scitranslmed.abb7661

By:

Bachireddy, Pavan;
Ennis, Christina;
Nguyen, Vinhkhang N.;
Gohil, Satyen H.;
Clement, Kendell;
Shukla, Sachet A.;
Forman, Juliet;
Barkas, Nikolaos;
Freeman, Samuel;
Bavli, Natalie;
Elagina, Liudmila;
Leshchiner, Ignaty;
Mohammad, Arman W.;
Mathewson, Nathan D.;
Keskin, Derin B.;
Rassenti, Laura Z.;
Kipps, Thomas J.;
Brown, Jennifer R.;
Getz, Gad;
Ho, Vincent T.

Publication type:

Article

OAB-054: Single-cell RNA-sequencing identifies immune biomarkers of response to immunotherapy in patients with high-risk Smoldering Myeloma.

Published in:

Clinical Lymphoma, Myeloma & Leukemia, 2021, v. 21, p. S38, doi. 10.1016/S2152-2650(21)02134-0

By:

Sklavenitis-Pistofidis, Romanos;
Dutta, Ankit;
Ujwary, Sylvia;
Redd, Robert;
Savell, Alexandra;
Zavidij, Oksana;
Su, Nang Kham;
Bustoros, Mark;
Haradhvala, Nicholas;
Aguet, Francois;
Getz, Gad;
Ghobrial, Irene

Publication type:

Article

The PROMISE Study: A Nationwide Project for Predicting the Progression of Developing Myeloma in a High-Risk Screened Population.

Published in:

Clinical Lymphoma, Myeloma & Leukemia, 2019, v. 19, p. e310, doi. 10.1016/j.clml.2019.09.509

By:

Cowan, Annie;
Higgins, Allison;
Fonseca, Rafael;
Getz, Gad;
Borrello, Ivan;
Rebbeck, Timothy;
Murray, David;
Johnson, Jeremiah;
Bustoros, Mark;
Stewart, Chip;
Zavidij, Oksana;
Adalsteinsson, Viktor;
Soule, Patrice;
Hamilton, Courtney;
Shayegh, Nader;
Guimond, Kathleen;
Berrios, Brianna;
Su, Nang;
Oluwadara, David;
Marinac, Catherine R.

Publication type:

Article

Whole-exome Sequencing and Ultra Low Pass-whole Genome Sequencing of cfDNA and CTCs Enable a Comprehensive Mutational Landscape of Multiple Myeloma.

Published in:

Clinical Lymphoma, Myeloma & Leukemia, 2017, v. 17, p. e3, doi. 10.1016/j.clml.2017.03.005

By:

Manier, Salomon;
Park, Jihye;
Freeman, Samuel;
Capelletti, Marzia;
Reed, Sarah;
Gydush, Gregory;
Salem, Karma;
Huynh, Daisy;
Glavey, Siobhan;
Sacco, Antonio;
Palumbo, Antonio;
Garderet, Laurent;
Kumar, Shaji;
Roccaro, Aldo;
Facon, Thierry;
Van Allen, Eliezer;
Love, Christopher;
Getz, Gad;
Adalsteinsson, Viktor;
Ghobrial, Irene

Publication type:

Article

Whole Exome Sequencing Identifies TSC1/TSC2 Biallelic Loss as the Primary and Sufficient Driver Event for Renal Angiomyolipoma Development.

Published in:

PLoS Genetics, 2016, v. 12, n. 8, p. 1, doi. 10.1371/journal.pgen.1006242

By:

Giannikou, Krinio;
Malinowska, Izabela A.;
Pugh, Trevor J.;
Yan, Rachel;
Tseng, Yuen-Yi;
Oh, Coyin;
Kim, Jaegil;
Tyburczy, Magdalena E.;
Chekaluk, Yvonne;
Liu, Yang;
Alesi, Nicola;
Finlay, Geraldine A.;
Wu, Chin-Lee;
Signoretti, Sabina;
Meyerson, Matthew;
Getz, Gad;
Boehm, Jesse S.;
Henske, Elizabeth P.;
Kwiatkowski, David J.

Publication type:

Article

A remarkably simple genome underlies highly malignant pediatric rhabdoid cancers.

Published in:

Journal of Clinical Investigation, 2012, v. 122, n. 8, p. 2983, doi. 10.1172/JCI64400

By:

Lee, Ryan S.;
Stewart, Chip;
Carter, Scott L.;
Ambrogio, Lauren;
Cibulskis, Kristian;
Sougnez, Carrie;
Lawrence, Michael S.;
Auclair, Daniel;
Mora, Jaume;
Golub, Todd R.;
Biegel, Jaclyn A.;
Getz, Gad;
Roberts, Charles W. M.

Publication type:

Article

Type 2 diabetes genetic loci informed by multi-trait associations point to disease mechanisms and subtypes: A soft clustering analysis.

Published in:

2018

By:

Udler, Miriam S.;
Kim, Jaegil;
von Grotthuss, Marcin;
Bonàs-Guarch, Sílvia;
Cole, Joanne B.;
Chiou, Joshua;
null, null;
Boehnke, Michael;
Laakso, Markku;
Atzmon, Gil;
Glaser, Benjamin;
Mercader, Josep M.;
Gaulton, Kyle;
Flannick, Jason;
Getz, Gad;
Florez, Jose C.;
Christopher D. Anderson on behalf of METASTROKE and the ISGC

Publication type:

journal article

The evolutionary landscape of chronic lymphocytic leukemia treated with ibrutinib targeted therapy.

Published in:

Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-02329-y

By:

Landau, Dan A.;
Zviran, Asaf;
Fein, Joshua;
Bozic, Ivana;
Rosebrock, Daniel;
Cibulskis, Carrie;
Livitz, Dimitri;
Leshchiner, Ignaty;
Getz, Gad;
Wu, Catherine J.;
Sun, Clare;
Herman, Sarah E. M.;
Underbayev, Chingiz;
Delong Liu;
Farooqui, Mohammed Z. H.;
Wiestner, Adrian;
Sivina, Mariela;
Hoellenriege, Julia;
Burger, Jan A.;
Ravichandran, Sarangan

Publication type:

Article

Mutational patterns in chemotherapy resistant muscle-invasive bladder cancer.

Published in:

Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-02320-7

By:

Mouw, Kent;
Liu, David;
Keliher, Daniel;
Reardon, Brendan;
Miao, Diana;
Stephanie Wankowicz, Stephanie Wankowicz;
Han, Garam;
Garraway, Levi A.;
Carter, Scott L.;
Bellmunt, Joaquim;
Van Allen, Eliezer M.;
Weiner-Taylor, Amaro;
Kim, Jaegil;
Getz, Gad;
Abbosh, Philip;
Dulaimi, Essel;
Chen, David Y. T.;
Katherine Alpaugh, R.;
Plimack, Elizabeth R.;
Min Yuen Teo

Publication type:

Article

Systematic genomic and translational efficiency studies of uveal melanoma.

Published in:

PLoS ONE, 2017, v. 12, n. 6, p. 1, doi. 10.1371/journal.pone.0178189

By:

Johnson, Chelsea Place;
Kim, Ivana K.;
Esmaeli, Bita;
Amin-Mansour, Ali;
Treacy, Daniel J.;
Carter, Scott L.;
Hodis, Eran;
Wagle, Nikhil;
Seepo, Sara;
Yu, Xiaoxing;
Lane, Anne Marie;
Gragoudas, Evangelos S.;
Vazquez, Francisca;
Nickerson, Elizabeth;
Cibulskis, Kristian;
McKenna, Aaron;
Gabriel, Stacey B.;
Getz, Gad;
Van Allen, Eliezer M.;
‘t Hoen, Peter A. C.

Publication type:

Article

PathSeq: software to identify or discover microbes by deep sequencing of human tissue.

Published in:

Nature Biotechnology, 2011, v. 29, n. 5, p. 393, doi. 10.1038/nbt.1868

By:

Kostic, Aleksandar D.;
Ojesina, Akinyemi I.;
Pedamallu, Chandra Sekhar;
Joonil Jung;
Verhaak, Roel G. W.;
Getz, Gad;
Meyerson, Matthew

Publication type:

Article

Integrative genomics viewer.

Published in:

Nature Biotechnology, 2011, v. 29, n. 1, p. 24, doi. 10.1038/nbt.1754

By:

Robinson, James T;
Thorvaldsdóttir, Helga;
Winckler, Wendy;
Guttman, Mitchell;
Lander, Eric S;
Getz, Gad;
Mesirov, Jill P

Publication type:

Article

Automated assignment of SCOP and CATH protein structure classifications from FSSP scores.

Published in:

Proteins, 2002, v. 46, n. 4, p. 405, doi. 10.1002/prot.1176

By:

Getz, Gad;
Vendruscolo, Michele;
Sachs, David;
Domany, Eytan

Publication type:

Article

Advances in understanding cancer genomes through second-generation sequencing.

Published in:

2010

By:

Meyerson, Matthew;
Gabriel, Stacey;
Getz, Gad

Publication type:

journal article

DNA microarrays identification of primary and secondary target genes regulated by p53.

Published in:

Oncogene, 2001, v. 20, n. 18, p. 2225, doi. 10.1038/sj.onc.1204319

By:

Kannan, Karuppiah;
Amariglio, Ninette;
Rechavi, Gideon;
Jakob-Hirsch, Jasmine;
Kela, Itai;
Kaminski, Naftali;
Getz, Gad;
Domany, Eytan;
Givol, David

Publication type:

Article

Predicting and affecting response to cancer therapy based on pathway-level biomarkers.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-17090-y

By:

Ben-Hamo, Rotem;
Jacob Berger, Adi;
Gavert, Nancy;
Miller, Mendy;
Pines, Guy;
Oren, Roni;
Pikarsky, Eli;
Benes, Cyril H.;
Neuman, Tzahi;
Zwang, Yaara;
Efroni, Sol;
Getz, Gad;
Straussman, Ravid

Publication type:

Article

p190 RhoGAP promotes contact inhibition in epithelial cells by repressing YAP activity.

Published in:

Journal of Cell Biology, 2018, v. 217, n. 9, p. 3183, doi. 10.1083/jcb.201710058

By:

Frank, Scott R.;
Köllmann, Clemens P.;
Phi Luong;
Galli, Giorgio G.;
Lihua Zou;
Bernards, André;
Getz, Gad;
Calogero, Raffaele A.;
Frödin, Morten;
Hansen, Steen H.

Publication type:

Article

Deeper response predicts better outcomes in high-risk-smoldering-myeloma: results of the I-PRISM phase II clinical trial.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-024-55308-5

By:

Nadeem, Omar;
Aranha, Michelle P.;
Redd, Robert;
Timonian, Michael;
Magidson, Sophie;
Lightbody, Elizabeth D.;
Alberge, Jean-Baptiste;
Bertamini, Luca;
Dutta, Ankit K.;
El-Khoury, Habib;
Bustoros, Mark;
Laubach, Jacob P.;
Bianchi, Giada;
O'Donnell, Elizabeth;
Wu, Ting;
Tsuji, Junko;
Anderson, Kenneth C.;
Getz, Gad;
Trippa, Lorenzo;
Richardson, Paul G.

Publication type:

Article

Scaling computational genomics to millions of individuals with GPUs.

Published in:

Genome Biology, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s13059-019-1836-7

By:

Taylor-Weiner, Amaro;
Aguet, François;
Haradhvala, Nicholas J.;
Gosai, Sager;
Anand, Shankara;
Kim, Jaegil;
Ardlie, Kristin;
Van Allen, Eliezer M.;
Getz, Gad

Publication type:

Article

Characterization of the DNA Copy-Number Genome in the Blood of Cutaneous T-Cell Lymphoma Patients.

Published in:

Journal of Investigative Dermatology, 2012, v. 132, n. 1, p. 188, doi. 10.1038/jid.2011.254

By:

Lin, William M;
Lewis, Julia M;
Filler, Renata B;
Modi, Badri G;
Carlson, Kacie R;
Reddy, Swapna;
Thornberg, Adam;
Saksena, Gordon;
Umlauf, Sheila;
Oberholzer, Patrick A;
Karpova, Maria;
Getz, Gad;
Mane, Shrikant;
Garraway, Levi A;
Dummer, Reinhard;
Berger, Carole L;
Edelson, Richard L;
Girardi, Michael

Publication type:

Article

High-resolution mapping of copy-number alterations with massively parallel sequencing.

Published in:

Nature Methods, 2009, v. 6, n. 1, p. 99, doi. 10.1038/nmeth.1276

By:

Chiang, Derek Y.;
Getz, Gad;
Jaffe, David B.;
O'Kelly, Michael J. T.;
Xiaojun Zhao;
Carter, Scott L.;
Russ, Carsten;
Nusbaum, Chad;
Meyerson, Matthew;
Lander, Eric S.

Publication type:

Article

Comprehensive identification of mutational cancer driver genes across 12 tumor types.

Published in:

Scientific Reports, 2013, p. 1, doi. 10.1038/srep02650

By:

Tamborero, David;
Gonzalez-Perez, Abel;
Perez-Llamas, Christian;
Deu-Pons, Jordi;
Kandoth, Cyriac;
Reimand, Jüri;
Lawrence, Michael S.;
Getz, Gad;
Bader, Gary D.;
Li Ding;
Lopez-Bigas, Nuria

Publication type:

Article

Gene expression analysis reveals a strong signature of an interferon-induced pathway in childhood lymphoblastic leukemia as well as in breast and ovarian cancer.

Published in:

Oncogene, 2005, v. 24, n. 42, p. 6367, doi. 10.1038/sj.onc.1208797

By:

Einav, Uri;
Tabach, Yuval;
Getz, Gad;
Yitzhaky, Assif;
Ozbek, Ugur;
Amariglio, Ninette;
Izraeli, Shai;
Rechavi, Gideon;
Domany, Eytan

Publication type:

Article

Inferring tumour purity and stromal and immune cell admixture from expression data.

Published in:

Nature Communications, 2013, v. 4, n. 10, p. 2612, doi. 10.1038/ncomms3612

By:

Yoshihara, Kosuke;
Shahmoradgoli, Maria;
Martínez, Emmanuel;
Vegesna, Rahulsimham;
Kim, Hoon;
Torres-Garcia, Wandaliz;
Treviño, Victor;
Shen, Hui;
Laird, Peter W.;
Levine, Douglas A.;
Carter, Scott L.;
Getz, Gad;
Stemke-Hale, Katherine;
Mills, Gordon B.;
Verhaak, Roel G.W.

Publication type:

Article

Somatic mutations affect key pathways in lung adenocarcinoma.

Published in:

Nature, 2008, v. 455, n. 7216, p. 1069, doi. 10.1038/nature07423

By:

Li Ding;
Getz, Gad;
Wheeler, David A.;
Mardis, Elaine R.;
McLellan, Michael D.;
Cibulskis, Kristian;
Sougnez, Carrie;
Greulich, Heidi;
Muzny, Donna M.;
Morgan, Margaret B.;
Fulton, Lucinda;
Fulton, Robert S.;
Qunyuan Zhang;
Wendl, Michael C.;
Lawrence, Michael S.;
Larson, David E.;
Chen, Ken;
Dooling, David J.;
Sabo, Aniko;
Hawes, Alicia C.

Publication type:

Article