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REliable PIcking by Consensus (REPIC): a consensus methodology for harnessing multiple cryo-EM particle pickers.
- Published in:
- Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-07045-0
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- Publication type:
- Article
Integration of extracellular RNA profiling data using metadata, biomedical ontologies and Linked Data technologies.
- Published in:
- Journal of Extracellular Vesicles, 2015, v. 4, p. 1, doi. 10.3402/jev.v4.27497
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- Publication type:
- Article
Cross-platform transcriptomic profiling of the response to recombinant human erythropoietin.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-00608-9
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- Publication type:
- Article
Analysis of genomic variation in non-coding elements using population-scale sequencing data from the 1000 Genomes Project.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. 16, p. 7058, doi. 10.1093/nar/gkr342
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- Publication type:
- Article
Segmental duplications in the human genome reveal details of pseudogene formation.
- Published in:
- Nucleic Acids Research, 2010, v. 38, n. 20, p. 6997, doi. 10.1093/nar/gkq587
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- Publication type:
- Article
Pseudofam: the pseudogene families database.
- Published in:
- Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D738, doi. 10.1093/nar/gkn758
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- Publication type:
- Article
Toward a universal microarray: prediction of gene expression through nearest-neighbor probe sequence identification.
- Published in:
- Nucleic Acids Research, 2007, v. 35, n. 15, p. e99, doi. 10.1093/nar/gkm549
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- Publication type:
- Article
Performance comparison of whole-genome sequencing platforms.
- Published in:
- Nature Biotechnology, 2012, v. 30, n. 6, p. 562, doi. 10.1038/nbt0612-562e
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- Publication type:
- Article
Detecting and annotating genetic variations using the HugeSeq pipeline.
- Published in:
- Nature Biotechnology, 2012, v. 30, n. 3, p. 226, doi. 10.1038/nbt.2134
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- Publication type:
- Article
Performance comparison of whole-genome sequencing platforms.
- Published in:
- Nature Biotechnology, 2012, v. 30, n. 1, p. 78, doi. 10.1038/nbt.2065
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- Publication type:
- Article
Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library.
- Published in:
- Nature Biotechnology, 2010, v. 28, n. 1, p. 47, doi. 10.1038/nbt.1600
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- Publication type:
- Article
PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls.
- Published in:
- Nature Biotechnology, 2009, v. 27, n. 1, p. 66, doi. 10.1038/nbt.1518
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- Publication type:
- Article
An integrated approach for finding overlooked genes in yeast.
- Published in:
- Nature Biotechnology, 2002, v. 20, n. 1, p. 58, doi. 10.1038/nbt0102-58
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- Publication type:
- Article
MolLM: a unified language model for integrating biomedical text with 2D and 3D molecular representations.
- Published in:
- Bioinformatics, 2024, v. 40, p. i357, doi. 10.1093/bioinformatics/btae260
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- Publication type:
- Article
BioCoder: a benchmark for bioinformatics code generation with large language models.
- Published in:
- Bioinformatics, 2024, v. 40, p. i266, doi. 10.1093/bioinformatics/btae230
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- Publication type:
- Article
Leveraging long read sequencing from a single individual to provide a comprehensive resource for benchmarking variant calling methods.
- Published in:
- Scientific Reports, 2015, p. 14493, doi. 10.1038/srep14493
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- Publication type:
- Article
Characterization of stress-responsive lnc RNAs in Arabidopsis thaliana by integrating expression, epigenetic and structural features.
- Published in:
- Plant Journal, 2014, v. 80, n. 5, p. 848, doi. 10.1111/tpj.12679
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- Publication type:
- Article
Extending gene ontology in the context of extracellular RNA and vesicle communication.
- Published in:
- Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0061-5
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- Publication type:
- Article
Network propagation-based prioritization of long tail genes in 17 cancer types.
- Published in:
- Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02504-x
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- Publication type:
- Article
SVFX: a machine learning framework to quantify the pathogenicity of structural variants.
- Published in:
- Genome Biology, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s13059-020-02178-x
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- Publication type:
- Article
HingeMaster: Normal mode hinge prediction approach and integration of complementary predictors.
- Published in:
- Proteins, 2008, v. 73, n. 2, p. 299, doi. 10.1002/prot.22060
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- Publication type:
- Article
Annotating non-coding regions of the genome.
- Published in:
- 2010
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- Publication type:
- journal article
Comprehensive analysis of the pseudogenes of glycolytic enzymes in vertebrates: the anomalously high number of GAPDH pseudogenes highlights a recent burst of retrotrans-positional activity.
- Published in:
- BMC Genomics, 2009, v. 10, p. 480, doi. 10.1186/1471-2164-10-480
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- Publication type:
- Article
Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing.
- Published in:
- BMC Genomics, 2006, v. 7, p. 216, doi. 10.1186/1471-2164-7-216
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- Publication type:
- Article
Detection of copy number variation from array intensity and sequencing read depth using a stepwise Bayesian model.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 539, doi. 10.1186/1471-2105-11-539
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- Publication type:
- Article
MOTIPS: Automated Motif Analysis for Predicting Targets of Modular Protein Domains.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 243, doi. 10.1186/1471-2105-11-243
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- Publication type:
- Article
LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics.
- Published in:
- BMC Bioinformatics, 2007, v. 8, p. S5, doi. 10.1186/1471-2105-8-S3-S5
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- Publication type:
- Article
Publishing perishing? Towards tomorrow's information architecture.
- Published in:
- BMC Bioinformatics, 2007, v. 8, p. 17, doi. 10.1186/1471-2105-8-17
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- Publication type:
- Article
Unlocking the secrets of the genome.
- Published in:
- Nature, 2009, v. 459, n. 7249, p. 927, doi. 10.1038/459927a
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- Publication type:
- Article
Digging for dead genes: an analysis of the characteristics of the pseudogene population in the Caenorhabditis elegans genome.
- Published in:
- Nucleic Acids Research, 2001, v. 29, n. 3, p. 818, doi. 10.1093/nar/29.3.818
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- Publication type:
- Article
Molecular sampling of prostate cancer: a dilemma for predicting disease progression.
- Published in:
- BMC Medical Genomics, 2010, v. 3, p. 8, doi. 10.1186/1755-8794-3-8
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- Publication type:
- Article
Structured digital tables on the Semantic Web: toward a structured digital literature.
- Published in:
- Molecular Systems Biology, 2010, v. 6, n. 1, p. 1, doi. 10.1038/msb.2010.45
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- Publication type:
- Article
Loregic: A Method to Characterize the Cooperative Logic of Regulatory Factors.
- Published in:
- PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004132
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- Publication type:
- Article
Measuring the Evolutionary Rewiring of Biological Networks.
- Published in:
- PLoS Computational Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1371/journal.pcbi.1001050
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- Publication type:
- Article
Analysis of Combinatorial Regulation: Scaling of Partnerships between Regulators with the Number of Governed Targets.
- Published in:
- PLoS Computational Biology, 2010, v. 6, n. 5, p. 1, doi. 10.1371/journal.pcbi.1000755
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- Publication type:
- Article
Network Modeling Identifies Molecular Functions Targeted by miR-204 to Suppress Head and Neck Tumor Metastasis.
- Published in:
- PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000730
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- Publication type:
- Article
Getting Started in Gene Orthology and Functional Analysis.
- Published in:
- PLoS Computational Biology, 2010, v. 6, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000703
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- Publication type:
- Article
Small RNAs Originated from Pseudogenes: cis- or trans- Acting?
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- PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000449
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- Publication type:
- Article
Integrating Sequencing Technologies in Personal Genomics: Optimal Low Cost Reconstruction of Structural Variants.
- Published in:
- PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000432
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- Publication type:
- Article
Getting Started in Text Mining: Part Two6.
- Published in:
- PLoS Computational Biology, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000411
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- Publication type:
- Article
Integrated Assessment of Genomic Correlates of Protein Evolutionary Rate.
- Published in:
- PLoS Computational Biology, 2009, v. 5, n. 6, p. 1, doi. 10.1371/journal.pcbi.1000413
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- Publication type:
- Article
Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis.
- Published in:
- Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-00050-4
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- Publication type:
- Article
Erratum: Analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms.
- Published in:
- Nature Communications, 2015, v. 6, n. 9, p. 8389, doi. 10.1038/ncomms9389
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- Publication type:
- Article
Analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms.
- Published in:
- Nature Communications, 2015, v. 6, n. 6, p. 7256, doi. 10.1038/ncomms8256
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- Publication type:
- Article
An ensemble approach to accurately detect somatic mutations using SomaticSeq.
- Published in:
- Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0758-2
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- Publication type:
- Article
Sixty years of genome biology.
- Published in:
- Genome Biology, 2013, v. 14, n. 4, p. 113, doi. 10.1186/gb-2013-14-4-113
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- Publication type:
- Article
The GENCODE pseudogene resource.
- Published in:
- Genome Biology, 2012, v. 13, n. 9, p. 1, doi. 10.1186/gb-2012-13-9-r51
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- Publication type:
- Article
Genome-wide analysis of chromatin features identifies histone modification sensitive and insensitive yeast transcription factors.
- Published in:
- Genome Biology, 2011, v. 12, n. 11, p. 1, doi. 10.1186/gb-2011-12-11-r111
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- Publication type:
- Article
The real cost of sequencing: higher than you think!
- Published in:
- Genome Biology, 2011, v. 12, n. 8, p. 125, doi. 10.1186/gb-2011-12-8-125
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- Publication type:
- Article
The CRIT framework for identifying cross patterns in systems biology and application to chemogenomics.
- Published in:
- Genome Biology, 2011, v. 12, n. 3, p. 1, doi. 10.1186/gb-2011-12-3-r32
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- Publication type:
- Article