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Pro-Frame: similarity-based gene recognition in eukaryotic DNA sequences with errors.
- Published in:
- Bioinformatics, 2001, v. 17, n. 1, p. 13, doi. 10.1093/bioinformatics/17.1.13
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- Article
Evolution of Regulatory Motifs of Bacterial Transcription Factors.
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- In Silico Biology, 2010, v. 10, n. 3/4, p. 163, doi. 10.3233/isb-2010-0425
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- Article
Bioinformatics Classification and Functional Analysis of PhoH Homologs.
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- In Silico Biology, 2003, v. 3, n. 1/2, p. 3
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- Article
An Algorithm for Identification of Regulatory Signals in Unaligned DNA Sequences, Its Testing and Parallel Implementation.
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- In Silico Biology, 2003, v. 3, n. 1/2, p. 33
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- Publication type:
- Article
The Channel in Transporters is Formed by Residues That Are Rare in Transmembrane Helices.
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- In Silico Biology, 2003, v. 3, n. 1/2, p. 197
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- Publication type:
- Article
Genomic study of the Ket: a Paleo-Eskimo-related ethnic group with significant ancient North Eurasian ancestry.
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- Scientific Reports, 2016, p. 20768, doi. 10.1038/srep20768
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- Article
Mutational Signatures in Wild Type Escherichia coli Strains Reveal Predominance of DNA Polymerase Errors.
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- Genome Biology & Evolution, 2024, v. 16, n. 4, p. 1, doi. 10.1093/gbe/evae035
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- Article
Influence of the spacer region between the Shine–Dalgarno box and the start codon for fine‐tuning of the translation efficiency in Escherichia coli.
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- Microbial Biotechnology, 2020, v. 13, n. 4, p. 1254, doi. 10.1111/1751-7915.13561
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- Article
Natural variation of gene models in Drosophila melanogaster.
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- BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1415-6
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- Article
Comparative analysis of CRISPR cassettes from the human gut metagenomic contigs.
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- BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-202
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- Article
RegTransBase - a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes.
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- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-213
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- Article
Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus.
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- BMC Genomics, 2011, v. 12, p. 1, doi. 10.1186/1471-2164-12-S1-S3
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- Article
De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum).
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- BMC Genomics, 2011, v. 12, n. 1, p. 1, doi. 10.1186/1471-2164-12-30
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- Article
Simplification of Ribosomes in Bacteria with Tiny Genomes.
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- Molecular Biology & Evolution, 2021, v. 38, n. 1, p. 58, doi. 10.1093/molbev/msaa184
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- Article
Microbiomes of gall-inducing copepod crustaceans from the corals Stylophora pistillata (Scleractinia) and Gorgonia ventalina (Alcyonacea).
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- Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-29953-y
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- Publication type:
- Article
Nitrogen Fixation and Molecular Oxygen: Comparative Genomic Reconstruction of Transcription Regulation in Alphaproteobacteria.
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- Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.01343
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- Article
Comparative genomics and evolution of regulons of the LacI-family transcription factors.
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- Frontiers in Microbiology, 2014, v. 5, p. 1, doi. 10.3389/fmicb.2014.00294
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- Article
Comparative genomics and evolution of regulons of the LacI-family transcription factors.
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- Frontiers in Microbiology, 2014, v. 5, p. 1, doi. 10.3389/fmicb.2014.00294
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- Publication type:
- Article
Functional implications of splicing polymorphisms in the human genome.
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- Human Molecular Genetics, 2013, v. 22, n. 17, p. 3449, doi. 10.1093/hmg/ddt200
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- Article
Neanderthal ancestry drives evolution of lipid catabolism in contemporary Europeans.
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- Nature Communications, 2014, v. 5, n. 4, p. 3584, doi. 10.1038/ncomms4584
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- Article
Changes in snoRNA and snRNA Abundance in the Human, Chimpanzee, Macaque, and Mouse Brain.
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- Genome Biology & Evolution, 2016, v. 8, n. 3, p. 840, doi. 10.1093/gbe/evw038
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- Article
Weak Negative and Positive Selection and the Drift Load at Splice Sites.
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- Genome Biology & Evolution, 2014, v. 6, n. 6, p. 1437, doi. 10.1093/gbe/evu100
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- Article
Differential Impact of Hexuronate Regulators ExuR and UxuR on the Escherichia coli Proteome.
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- International Journal of Molecular Sciences, 2022, v. 23, n. 15, p. 8379, doi. 10.3390/ijms23158379
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- Article
Comparative genomic analyses of nickel, cobalt and vitamin B12 utilization.
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- BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-78
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- Article
Computational analysis of splicing errors and mutations in human transcripts.
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- BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-13
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- Article
Fast rate of evolution in alternatively spliced coding regions of mammalian genes.
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- BMC Genomics, 2006, v. 7, p. 84, doi. 10.1186/1471-2164-7-84
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- Article
Biases in read coverage demonstrated by interlaboratory and interplatform comparison of 117 mRNA and genome sequencing experiments.
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- BMC Bioinformatics, 2012, v. 13, n. Suppl 6, p. 1, doi. 10.1186/1471-2105-13-S6-S4
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- Article
Perspectives for the reconstruction of 3D chromatin conformation using single cell Hi-C data.
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- PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009546
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- Article
Some alphabets easily beat Russian letter count.
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- 2008
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- Letter
Low-molecular-weight post-translationally modified microcins.
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- 2007
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- Erratum
Low-molecular-weight post-translationally modified microcins.
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- Molecular Microbiology, 2007, v. 65, n. 6, p. 1380, doi. 10.1111/j.1365-2958.2007.05874.x
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- Article
Avoidance of palindromic words in bacterial and archaeal genomes: a close connection with restriction enzymes.
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- Nucleic Acids Research, 1997, v. 25, n. 12, p. 2430, doi. 10.1093/nar/25.12.2430
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- Article
Sugar Lego: gene composition of bacterial carbohydrate metabolism genomic loci.
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- Biology Direct, 2017, v. 12, p. 1, doi. 10.1186/s13062-017-0200-7
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- Article
Automated selection of positions determining functional specificity of proteins by comparative analysis of orthologous groups in protein families.
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- Protein Science: A Publication of the Protein Society, 2004, v. 13, n. 2, p. 443, doi. 10.1110/ps.03191704
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- Article
Comparative analysis of RNA regulatory elements of amino acid metabolism genes in Actinobacteria.
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- BMC Microbiology, 2005, v. 5, p. 54, doi. 10.1186/1471-2180-5-54
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- Article
Genome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis - a rich resource to identify new transcripts, proteins and to study gene regulation.
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- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2602-9
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- Publication type:
- Article
A Novel Intra-U1 snRNP Cross-Regulation Mechanism: Alternative Splicing Switch Links U1C and U1-70K Expression.
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- PLoS Genetics, 2013, v. 9, n. 10, p. 1, doi. 10.1371/journal.pgen.1003856
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- Article
Genome-Wide Analysis of Cell Type-Specific Gene Transcription during Spore Formation in <i>Clostridium difficile</i>.
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- PLoS Genetics, 2013, v. 9, n. 10, p. 1, doi. 10.1371/journal.pgen.1003756
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- Article
Neanderthal and Denisovan ancestry in Papuans: A functional study.
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- Journal of Bioinformatics & Computational Biology, 2018, v. 16, n. 2, p. -1, doi. 10.1142/S0219720018400115
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- Article
Detection of homologous recombination in closely related strains.
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- Journal of Bioinformatics & Computational Biology, 2016, v. 14, n. 2, p. -1, doi. 10.1142/S0219720016410018
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- Publication type:
- Article
History of chromosome rearrangements reflects the spatial organization of yeast chromosomes.
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- Journal of Bioinformatics & Computational Biology, 2016, v. 14, n. 2, p. -1, doi. 10.1142/S021972001641002X
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- Article
INTRODUCTION.
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- Journal of Bioinformatics & Computational Biology, 2010, v. 8, n. 3, p. v, doi. 10.1142/S0219720010004938
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- Article
INTRODUCTION.
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- Journal of Bioinformatics & Computational Biology, 2008, v. 6, n. 4, p. vii, doi. 10.1142/S0219720008003655
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- Publication type:
- Article
OVERLAPPING ALTERNATIVE DONOR SPLICE SITES IN THE HUMAN GENOME.
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- Journal of Bioinformatics & Computational Biology, 2007, v. 5, n. 5, p. 991, doi. 10.1142/S0219720007003089
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- Publication type:
- Article
COMPARATIVE GENOMICS OF TRANSCRIPTIONAL REGULATION IN YEASTS AND ITS APPLICATION TO IDENTIFICATION OF A CANDIDATE ALPHA-ISOPROPYLMALATE TRANSPORTER.
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- Journal of Bioinformatics & Computational Biology, 2006, v. 4, n. 5, p. 981, doi. 10.1142/S0219720006002284
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- Article
RECOGNITION OF TRANSMEMBRANE SEGMENTS IN PROTEINS:: REVIEW AND CONSISTENCY-BASED BENCHMARKING OF INTERNET SERVERS.
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- Journal of Bioinformatics & Computational Biology, 2006, v. 4, n. 5, p. 1033, doi. 10.1142/S0219720006002326
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- Article
INTRODUCTION TO SELECTED PAPERS FROM THE 2ND INTERNATIONAL MOSCOW CONFERENCE ON COMPUTATIONAL MOLECULAR BIOLOGY (MCCMB'05), MOSCOW, RUSSIA, JULY 18–21, 2005.
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- Journal of Bioinformatics & Computational Biology, 2006, v. 4, n. 2, p. xi, doi. 10.1142/S0219720006002090
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- Publication type:
- Article
EVOLUTION OF THE NADR REGULON IN ENTEROBACTERIACEAE.
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- Journal of Bioinformatics & Computational Biology, 2005, v. 3, n. 4, p. 1007, doi. 10.1142/S0219720005001387
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- Publication type:
- Article
HiConfidence: a novel approach uncovering the biological signal in Hi-C data affected by technical biases.
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- Briefings in Bioinformatics, 2023, v. 24, n. 2, p. 1, doi. 10.1093/bib/bbad044
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- Publication type:
- Article
Single-cell Hi-C data analysis: safety in numbers.
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- Briefings in Bioinformatics, 2021, v. 22, n. 6, p. 1, doi. 10.1093/bib/bbab316
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- Publication type:
- Article