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Fast and deep phosphoproteome analysis with the Orbitrap Astral mass spectrometer.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-51274-0
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- Article
Integrative annotation scores of variants for impact on RNA binding protein activities.
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- Bioinformatics, 2024, v. 40, n. 4, p. 1, doi. 10.1093/bioinformatics/btae181
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- Article
Gene-by-environment interactions influence the fitness cost of gene copy-number variation in yeast.
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- G3: Genes | Genomes | Genetics, 2023, v. 13, n. 10, p. 1, doi. 10.1093/g3journal/jkad159
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- Article
Advances in S. cerevisiae Engineering for Xylose Fermentation and Biofuel Production: Balancing Growth, Metabolism, and Defense.
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- Journal of Fungi, 2023, v. 9, n. 8, p. 786, doi. 10.3390/jof9080786
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- Article
PKA regulatory subunit Bcy1 couples growth, lipid metabolism, and fermentation during anaerobic xylose growth in Saccharomyces cerevisiae.
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- PLoS Genetics, 2023, v. 19, n. 7, p. 1, doi. 10.1371/journal.pgen.1010593
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Modeling single-cell phenotypes links yeast stress acclimation to transcriptional repression and pre-stress cellular states.
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- eLife, 2022, p. 1, doi. 10.7554/eLife.82017
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- Article
Comparative functional genomics identifies an iron-limited bottleneck in a Saccharomyces cerevisiae strain with a cytosolic-localized isobutanol pathway.
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- Synthetic & Systems Biotechnology, 2022, v. 7, n. 2, p. 738, doi. 10.1016/j.synbio.2022.02.007
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Natural variation in the consequences of gene overexpression and its implications for evolutionary trajectories.
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- eLife, 2021, p. 1, doi. 10.7554/eLife.70564
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- Article
Genetic variation in aneuploidy prevalence and tolerance across Saccharomyces cerevisiae lineages.
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- Genetics, 2021, v. 217, n. 4, p. 1, doi. 10.1093/genetics/iyab015
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- Article
CRISpy-Pop: A Web Tool for Designing CRISPR/Cas9-Driven Genetic Modifications in Diverse Populations.
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- G3: Genes | Genomes | Genetics, 2020, v. 10, n. 11, p. 4287, doi. 10.1534/g3.120.401498
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The genetic basis of aneuploidy tolerance in wild yeast.
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- eLife, 2020, p. 1, doi. 10.7554/eLife.52063
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- Article
The genetic basis of aneuploidy tolerance in wild yeast.
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- eLife, 2020, p. 1, doi. 10.7554/eLife.52063
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- Article
PKA and HOG signaling contribute separable roles to anaerobic xylose fermentation in yeast engineered for biofuel production.
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- PLoS ONE, 2019, v. 14, n. 5, p. 1, doi. 10.1371/journal.pone.0212389
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- Article
Rewired cellular signaling coordinates sugar and hypoxic responses for anaerobic xylose fermentation in yeast.
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- PLoS Genetics, 2019, v. 15, n. 3, p. 1, doi. 10.1371/journal.pgen.1008037
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- Article
Genetic background effects in quantitative genetics: gene-by-system interactions.
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- Current Genetics, 2018, v. 64, n. 6, p. 1173, doi. 10.1007/s00294-018-0835-7
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- Article
Genotype-by-Environment-by-Environment Interactions in the Saccharomyces cerevisiae Transcriptomic Response to Alcohols and Anaerobiosis.
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- G3: Genes | Genomes | Genetics, 2018, v. 8, n. 12, p. 3881, doi. 10.1534/g3.118.200677
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- Article
Natural Variation in the Multidrug Efflux Pump SGE1 Underlies Ionic Liquid Tolerance in Yeast.
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- Genetics, 2018, v. 210, n. 1, p. 219, doi. 10.1534/genetics.118.301161
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- Article
Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response.
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- PLoS Computational Biology, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pcbi.1006088
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Genome-wide association across Saccharomyces cerevisiae strains reveals substantial variation in underlying gene requirements for toxin tolerance.
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- PLoS Genetics, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pgen.1007217
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- Article
The Substrates of Nonsense-Mediated mRNA Decay in Caenorhabditis elegans.
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- G3: Genes | Genomes | Genetics, 2018, v. 8, n. 1, p. 195, doi. 10.1534/g3.117.300254
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- Article
Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress.
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- PLoS Biology, 2017, v. 15, n. 12, p. 1, doi. 10.1371/journal.pbio.2004050
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Genome Sequence and Analysis of a Stress-Tolerant, Wild-Derived Strain of Saccharomyces cerevisiae Used in Biofuels Research.
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- G3: Genes | Genomes | Genetics, 2016, v. 6, n. 6, p. 1757, doi. 10.1534/g3.116.029389
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- Article
Further support for aneuploidy tolerance in wild yeast and effects of dosage compensation on gene copy-number evolution.
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- eLife, 2016, p. 1, doi. 10.7554/eLife.14409
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A unique ecological niche fosters hybridization of oak-tree and vineyard isolates of Saccharomyces cerevisiae.
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- Molecular Ecology, 2015, v. 24, n. 23, p. 5886, doi. 10.1111/mec.13439
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Ecological and Genetic Barriers Differentiate Natural Populations of Saccharomyces cerevisiae.
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- Molecular Biology & Evolution, 2015, v. 32, n. 9, p. 2317, doi. 10.1093/molbev/msv112
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Meeting Report on Experimental Approaches to Evolution and Ecology Using Yeast and Other Model Systems.
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- G3: Genes | Genomes | Genetics, 2015, v. 5, n. 6, p. 1021, doi. 10.1534/g3.115.018614
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- Article
Dosage compensation can buffer copy-number variation in wild yeast.
- Published in:
- eLife, 2015, p. 1, doi. 10.7554/eLife.05462
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- Article
Pathway connectivity and signaling coordination in the yeast stress-activated signaling network.
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- Molecular Systems Biology, 2014, v. 10, n. 11, p. n/a, doi. 10.15252/msb.20145120
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- Article
Competence for Chemical Reprogramming of Sexual Fate Correlates with an Intersexual Molecular Signature in Caenorhabditis elegans.
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- Genetics, 2014, v. 198, n. 2, p. 561, doi. 10.1534/genetics.114.169409
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- Article
Comparative Genomics of Saccharomyces cerevisiae Natural Isolates for Bioenergy Production.
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- Genome Biology & Evolution, 2014, v. 6, n. 9, p. 2557, doi. 10.1093/gbe/evu199
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- Article
Genetic Architecture of Ethanol-Responsive Transcriptome Variation in Saccharomyces cerevisiae Strains.
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- Genetics, 2014, v. 198, n. 1, p. 368, doi. 10.1534/genetics.114.167429
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Integrated Module and Gene-Specific Regulatory Inference Implicates Upstream Signaling Networks.
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- PLoS Computational Biology, 2013, v. 9, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003252
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- Article
Cellular Memory of Acquired Stress Resistance in Saccharomyces cerevisiae.
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- Genetics, 2012, v. 192, n. 2, p. 495, doi. 10.1534/genetics.112.143016
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An Aspergillus nidulans bZIP response pathway hardwired for defensive secondary metabolism operates through aflR.
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- Molecular Microbiology, 2012, v. 83, n. 5, p. 1024, doi. 10.1111/j.1365-2958.2012.07986.x
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- Article
Multiple Means to the Same End: The Genetic Basis of Acquired Stress Resistance in Yeast.
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- PLoS Genetics, 2011, v. 7, n. 11, p. 1, doi. 10.1371/journal.pgen.1002353
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A dynamic model of proteome changes reveals new roles for transcript alteration in yeast.
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- Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.48
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- Article
Incipient Balancing Selection through Adaptive Loss of Aquaporins in Natural Saccharomyces cerevisiae Populations.
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- PLoS Genetics, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pgen.1000893
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Transient Genotype-by-Environment Interactions Following Environmental Shock Provide a Source of Expression Variation for Essential Genes.
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- Genetics, 2010, v. 184, n. 2, p. 587, doi. 10.1534/genetics.109.107268
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Variations in Stress Sensitivity and Genomic Expression in Diverse S. cerevisiae Isolates.
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- PLoS Genetics, 2008, v. 4, n. 10, p. 1, doi. 10.1371/journal.pgen.1000223
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- Article
Comparative genomics of the environmental stress response in ascomycete fungi.
- Published in:
- Yeast, 2007, v. 24, n. 11, p. 961, doi. 10.1002/yea.1512
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Flexible promoter architecture requirements for coactivator recruitment.
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- BMC Molecular Biology, 2006, v. 7, p. 16, doi. 10.1186/1471-2199-7-16
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- Article
Conservation and Evolution of Cis-Regulatory Systems in Ascomycete Fungi.
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- PLoS Biology, 2004, v. 2, n. 12, p. 2202, doi. 10.1371/journal.pbio.0020398
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Conservation and Evolution of Cis-Regulatory Systems in Ascomycete Fungi.
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- PLoS Biology, 2004, v. 2, n. 11, p. 1, doi. 10.1371/journal.pbio.0020398
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- Article
Role of thioredoxin reductase in the Yap1p-dependent response to oxidative stress in Saccharomyces cerevisiae.
- Published in:
- Molecular Microbiology, 2001, v. 39, n. 3, p. 595, doi. 10.1046/j.1365-2958.2001.02255.x
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- Article