Works by Gardiner, Laura-Jayne

Results: 18

Integrating genomic resources to present full gene and putative promoter capture probe sets for bread wheat.

Published in:

GigaScience, 2019, v. 8, n. 4, p. N.PAG, doi. 10.1093/gigascience/giz018

By:

Gardiner, Laura-Jayne;
Brabbs, Thomas;
Akhunov, Alina;
Jordan, Katherine;
Budak, Hikmet;
Richmond, Todd;
Singh, Sukhwinder;
Catchpole, Leah;
Akhunov, Eduard;
Hall, Anthony

Publication type:

Article

Mapping-by-sequencing in complex polyploid genomes using genic sequence capture: a case study to map yellow rust resistance in hexaploid wheat.

Published in:

Plant Journal, 2016, v. 87, n. 4, p. 403, doi. 10.1111/tpj.13204

By:

Gardiner, Laura‐Jayne;
Bansept‐Basler, Pauline;
Olohan, Lisa;
Joynson, Ryan;
Brenchley, Rachel;
Hall, Neil;
O'Sullivan, Donal M.;
Hall, Anthony

Publication type:

Article

Using genic sequence capture in combination with a syntenic pseudo genome to map a deletion mutant in a wheat species.

Published in:

Plant Journal, 2014, v. 80, n. 5, p. 895, doi. 10.1111/tpj.12660

By:

Gardiner, Laura‐Jayne;
Gawroński, Piotr;
Olohan, Lisa;
Schnurbusch, Thorsten;
Hall, Neil;
Hall, Anthony

Publication type:

Article

Analysis of the recombination landscape of hexaploid bread wheat reveals genes controlling recombination and gene conversion frequency.

Published in:

Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-019-1675-6

By:

Gardiner, Laura-Jayne;
Wingen, Luzie U.;
Bailey, Paul;
Joynson, Ryan;
Brabbs, Thomas;
Wright, Jonathan;
Higgins, James D.;
Hall, Neil;
Griffiths, Simon;
Clavijo, Bernardo J.;
Hall, Anthony

Publication type:

Article

Combining explainable machine learning, demographic and multi-omic data to inform precision medicine strategies for inflammatory bowel disease.

Published in:

PLoS ONE, 2022, v. 17, n. 2, p. 1, doi. 10.1371/journal.pone.0263248

By:

Gardiner, Laura-Jayne;
Carrieri, Anna Paola;
Bingham, Karen;
Macluskie, Graeme;
Bunton, David;
McNeil, Marian;
Pyzer-Knapp, Edward O.

Publication type:

Article

A framework for gene mapping in wheat demonstrated using the Yr7 yellow rust resistance gene.

Published in:

PLoS ONE, 2020, v. 15, n. 4, p. 1, doi. 10.1371/journal.pone.0231157

By:

Gardiner, Laura-Jayne;
Bansept-Basler, Pauline;
El-Soda, Mohamed;
Hall, Anthony;
O'Sullivan, Donal M.

Publication type:

Article

AutoXAI4Omics: an automated explainable AI tool for omics and tabular data.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbae593

By:

Strudwick, James;
Gardiner, Laura-Jayne;
Denning-James, Kate;
Haiminen, Niina;
Evans, Ashley;
Kelly, Jennifer;
Madgwick, Matthew;
Utro, Filippo;
Seabolt, Ed;
Gibson, Christopher;
Bedi, Bharat;
Clayton, Daniel;
Howell, Ciaron;
Parida, Laxmi;
Carrieri, Anna Paola

Publication type:

Article

Developing a crop-wild-reservoir pathogen system to understand pathogen evolution and emergence.

Published in:

eLife, 2025, p. 1, doi. 10.7554/eLife.91245

By:

McMullan, Mark;
Percival-Alwyn, Lawrence;
Kaithakottil, Gemy G.;
Gardiner, Laura-Jayne;
Hill, Rowena;
Yvanne, Hélène;
Grey, Michelle;
Sawford, Kevin;
Ward, Sabrina Jaye;
Low, Ross;
Warring, Sally D.;
Heavens, Darren;
Peel, Ned;
Kroboth, Jakob;
Stevens, Mark;
Swarbreck, David;
Clark, Matt D.;
Hall, Neil

Publication type:

Article

Re-purposing software for functional characterization of the microbiome.

Published in:

Microbiome, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40168-020-00971-1

By:

Gardiner, Laura-Jayne;
Haiminen, Niina;
Utro, Filippo;
Parida, Laxmi;
Seabolt, Ed;
Krishna, Ritesh;
Kaufman, James H.

Publication type:

Article

DGCNN approach links metagenome-derived taxon and functional information providing insight into global soil organic carbon.

Published in:

NPJ Biofilms & Microbiomes, 2024, v. 10, n. 1, p. 1, doi. 10.1038/s41522-024-00583-9

By:

Gardiner, Laura-Jayne;
Marshall, Matthew;
Reusch, Katharina;
Dearden, Chris;
Birmingham, Mark;
Carrieri, Anna Paola;
Pyzer-Knapp, Edward O.;
Krishna, Ritesh;
Neal, Andrew L.

Publication type:

Article

Bluster or Lustre: Can AI Improve Crops and Plant Health?

Published in:

Plants (2223-7747), 2021, v. 10, n. 12, p. 2707, doi. 10.3390/plants10122707

By:

Gardiner, Laura-Jayne;
Krishna, Ritesh

Publication type:

Article

A modified sequence capture approach allowing standard and methylation analyses of the same enriched genomic DNA sample.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-4640-y

By:

Olohan, Lisa;
Gardiner, Laura-Jayne;
Lucaci, Anita;
Steuernagel, Burkhard;
Wulff, Brande;
Kenny, John;
Hall, Neil;
Hall, Anthony

Publication type:

Article

A genome-wide survey of DNA methylation in hexaploid wheat.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0838-3

By:

Gardiner, Laura-Jayne;
Quinton-Tulloch, Mark;
Olohan, Lisa;
Price, Jonathan;
Hall, Neil;
Hall, Anthony

Publication type:

Article

A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes.

Published in:

Genome Biology, 2015, v. 16, n. 1, p. 48, doi. 10.1186/s13059-015-0606-4

By:

Jordan, Katherine W;
Shichen Wang;
Yanni Lun;
Gardiner, Laura-Jayne;
MacLachlan, Ron;
Hucl, Pierre;
Wiebe, Krysta;
Debbie Wong;
Forrest, Kerrie L;
IWGS Consortium Andrew G Sharpe;
Sidebottom, Christine HD;
Hall, Neil;
Toomajian, Christopher;
Close, Timothy;
Dubcovsky, Jorge;
Akhunova, Alina;
Talbert, Luther;
Bansal, Urmil K;
Bariana, Harbans S;
Hayden, Matthew J

Publication type:

Article

Explainable AI reveals changes in skin microbiome composition linked to phenotypic differences.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-83922-6

By:

Carrieri, Anna Paola;
Haiminen, Niina;
Maudsley-Barton, Sean;
Gardiner, Laura-Jayne;
Murphy, Barry;
Mayes, Andrew E.;
Paterson, Sarah;
Grimshaw, Sally;
Winn, Martyn;
Shand, Cameron;
Hadjidoukas, Panagiotis;
Rowe, Will P. M.;
Hawkins, Stacy;
MacGuire-Flanagan, Ashley;
Tazzioli, Jane;
Kenny, John G.;
Parida, Laxmi;
Hoptroff, Michael;
Pyzer-Knapp, Edward O.

Publication type:

Article

Using human in vitro transcriptome analysis to build trustworthy machine learning models for prediction of animal drug toxicity.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-66481-0

By:

Gardiner, Laura-Jayne;
Carrieri, Anna Paola;
Wilshaw, Jenny;
Checkley, Stephen;
Pyzer-Knapp, Edward O.;
Krishna, Ritesh

Publication type:

Article

Uncovering candidate genes involved in photosynthetic capacity using unexplored genetic variation in Spring Wheat.

Published in:

Plant Biotechnology Journal, 2021, v. 19, n. 8, p. 1537, doi. 10.1111/pbi.13568

By:

Joynson, Ryan;
Molero, Gemma;
Coombes, Benedict;
Gardiner, Laura‐Jayne;
Rivera‐Amado, Carolina;
Piñera‐Chávez, Francisco J.;
Evans, John R.;
Furbank, Robert T.;
Reynolds, Matthew P.;
Hall, Anthony

Publication type:

Article

Elucidating the genetic basis of biomass accumulation and radiation use efficiency in spring wheat and its role in yield potential.

Published in:

Plant Biotechnology Journal, 2019, v. 17, n. 7, p. 1276, doi. 10.1111/pbi.13052

By:

Molero, Gemma;
Joynson, Ryan;
Pinera‐Chavez, Francisco J.;
Gardiner, Laura‐Jayne;
Rivera‐Amado, Carolina;
Hall, Anthony;
Reynolds, Matthew P.

Publication type:

Article