Works by Garcia Martin, Hector

Results: 32

Constraining Genome-Scale Models to Represent the Bow Tie Structure of Metabolism for 13C Metabolic Flux Analysis.

Published in:

Metabolites (2218-1989), 2018, v. 8, n. 1, p. 3, doi. 10.3390/metabo8010003

By:

Backman, Tyler W. H.;
Ando, David;
Singh, Jahnavi;
Keasling, Jay D.;
García Martín, Héctor

Publication type:

Article

Machine learning framework for assessment of microbial factory performance.

Published in:

PLoS ONE, 2019, v. 14, n. 1, p. 1, doi. 10.1371/journal.pone.0210558

By:

Oyetunde, Tolutola;
Liu, Di;
Martin, Hector Garcia;
Tang, Yinjie J.

Publication type:

Article

Structural insights into dehydratase substrate selection for the borrelidin and fluvirucin polyketide synthases.

Published in:

Journal of Industrial Microbiology & Biotechnology, 2019, v. 46, n. 8, p. 1225, doi. 10.1007/s10295-019-02189-z

By:

Barajas, Jesus F.;
McAndrew, Ryan P.;
Thompson, Mitchell G.;
Backman, Tyler W. H.;
Pang, Bo;
de Rond, Tristan;
Pereira, Jose H.;
Benites, Veronica T.;
Martín, Héctor García;
Baidoo, Edward E. K.;
Hillson, Nathan J.;
Adams, Paul D.;
Keasling, Jay D.

Publication type:

Article

A machine learning approach to predict metabolic pathway dynamics from time-series multiomics data.

Published in:

NPJ Systems Biology & Applications, 2018, v. 4, n. 1, p. N.PAG, doi. 10.1038/s41540-018-0054-3

By:

Costello, Zak;
Martin, Hector Garcia

Publication type:

Article

A machine learning approach to predict metabolic pathway dynamics from time-series multiomics data.

Published in:

NPJ Systems Biology & Applications, 2018, v. 4, n. 1, p. N.PAG, doi. 10.1038/s41540-018-0054-3

By:

Costello, Zak;
Martin, Hector Garcia

Publication type:

Article

Diseño de una picadora de pencas de maguey y nopal.

Published in:

Acta Universitaria, 2021, v. 31, p. 1, doi. 10.15174/au.2021.2580

By:

Duran García, Héctor Martin;
Pulido Delgado, José Luis;
Ávila Galarza, Alfredo;
Krasnoschekova, Yuri Vasilevich;
Krasotina, Larisa Vladimirovna

Publication type:

Article

Metatranscriptomic array analysis of ‘ Candidatus Accumulibacter phosphatis’-enriched enhanced biological phosphorus removal sludge.

Published in:

Environmental Microbiology, 2010, v. 12, n. 5, p. 1205, doi. 10.1111/j.1462-2920.2010.02163.x

By:

Shaomei He;
Kunin, Victor;
Haynes, Matthew;
Martin, Hector Garcia;
Ivanova, Natalia;
Rohwer, Forest;
Hugenholtz, Philip;
McMahon, Katherine D.

Publication type:

Article

Estimation of microbial cover distributions at Mammoth Hot Springs using a multiple clone library resampling method.

Published in:

Environmental Microbiology, 2006, v. 8, n. 7, p. 1145, doi. 10.1111/j.1462-2920.2006.01003.x

By:

Martín, Héctor García;
Goldenfeld, Nigel

Publication type:

Article

Enabling malic acid production from corn-stover hydrolysate in Lipomyces starkeyi via metabolic engineering and bioprocess optimization.

Published in:

Microbial Cell Factories, 2025, v. 24, n. 1, p. 1, doi. 10.1186/s12934-025-02705-0

By:

Czajka, Jeffrey J.;
Dai, Ziyu;
Radivojević, Tijana;
Kim, Joonhoon;
Deng, Shuang;
Lemmon, Teresa;
Swita, Marie;
Burnet, Meagan C;
Munoz, Nathalie;
Gao, Yuqian;
Kim, Young-Mo;
Hofstad, Beth;
Magnuson, Jon K.;
Garcia Martin, Hector;
Burnum-Johnson, Kristin E.;
Pomraning, Kyle R.

Publication type:

Article

Industrial brewing yeast engineered for the production of primary flavor determinants in hopped beer.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03293-x

By:

Denby, Charles M.;
Li, Rachel A.;
Vu, Van T.;
Costello, Zak;
Weiyin Lin;
Chan, Leanne Jade G.;
Williams, Joseph;
Donaldson, Bryan;
Bamforth, Charles W.;
Petzold, Christopher J.;
Scheller, Henrik V.;
Martin, Hector Garcia;
Keasling, Jay D.

Publication type:

Article

Examining Escherichia coli glycolytic pathways, catabolite repression, and metabolite channeling using Δpfk mutants.

Published in:

Biotechnology for Biofuels, 2016, v. 9, p. 1, doi. 10.1186/s13068-016-0630-y

By:

Hollinshead, Whitney D.;
Rodriguez, Sarah;
Martin, Hector Garcia;
Wang, George;
Baidoo, Edward E. K.;
Sale, Kenneth L.;
Keasling, Jay D.;
Mukhopadhyay, Aindrila;
Tang, Yinjie J.

Publication type:

Article

Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities.

Published in:

Nature Biotechnology, 2006, v. 24, n. 10, p. 1263, doi. 10.1038/nbt1247

By:

Martín, Héctor García;
Ivanova, Natalia;
Kunin, Victor;
Warnecke, Falk;
Barry, Kerrie W.;
McHardy, Alice C.;
Yeates, Christine;
He, Shaomei;
Salamov, Asaf A.;
Szeto, Ernest;
Dalin, Eileen;
Putnam, Nik H.;
Shapiro, Harris J.;
Pangilinan, Jasmyn L.;
Rigoutsos, Isidore;
Kyrpides, Nikos C.;
Blackall, Linda Louise;
McMahon, Katherine D.;
Hugenholtz, Philip

Publication type:

Article

BayFlux: A Bayesian method to quantify metabolic Fluxes and their uncertainty at the genome scale.

Published in:

PLoS Computational Biology, 2023, v. 19, n. 11, p. 1, doi. 10.1371/journal.pcbi.1011111

By:

Backman, Tyler W. H.;
Schenk, Christina;
Radivojevic, Tijana;
Ando, David;
Singh, Jahnavi;
Czajka, Jeffrey J.;
Costello, Zak;
Keasling, Jay D.;
Tang, Yinjie;
Akhmatskaya, Elena;
Garcia Martin, Hector

Publication type:

Article

A machine learning Automated Recommendation Tool for synthetic biology.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-18008-4

By:

Radivojević, Tijana;
Costello, Zak;
Workman, Kenneth;
Garcia Martin, Hector

Publication type:

Article

Combining mechanistic and machine learning models for predictive engineering and optimization of tryptophan metabolism.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-17910-1

By:

Zhang, Jie;
Petersen, Søren D.;
Radivojevic, Tijana;
Ramirez, Andrés;
Pérez-Manríquez, Andrés;
Abeliuk, Eduardo;
Sánchez, Benjamín J.;
Costello, Zak;
Chen, Yu;
Fero, Michael J.;
Martin, Hector Garcia;
Nielsen, Jens;
Keasling, Jay D.;
Jensen, Michael K.

Publication type:

Article

A miniaturized feedstocks-to-fuels pipeline for screening the efficiency of deconstruction and microbial conversion of lignocellulosic biomass.

Published in:

PLoS ONE, 2024, v. 19, n. 10, p. 1, doi. 10.1371/journal.pone.0305336

By:

Pidatala, Venkataramana R.;
Lei, Mengziang;
Choudhary, Hemant;
Petzold, Christopher J.;
Garcia Martin, Hector;
Simmons, Blake A.;
Gladden, John M.;
Rodriguez, Alberto

Publication type:

Article

The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1615-y

By:

Birkel, Garrett W.;
Ghosh, Amit;
Kumar, Vinay S.;
Weaver, Daniel;
Ando, David;
Backman, Tyler W. H.;
Arkin, Adam P.;
Keasling, Jay D.;
Martín, Héctor García

Publication type:

Article

A Method to Constrain Genome-Scale Models with 13C Labeling Data.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 9, p. 1, doi. 10.1371/journal.pcbi.1004363

By:

García Martín, Héctor;
Kumar, Vinay Satish;
Weaver, Daniel;
Ghosh, Amit;
Chubukov, Victor;
Mukhopadhyay, Aindrila;
Arkin, Adam;
Keasling, Jay D.

Publication type:

Article

A Peptide-Based Method for 13C Metabolic Flux Analysis in Microbial Communities.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003827

By:

Ghosh, Amit;
Nilmeier, Jerome;
Weaver, Daniel;
Adams, Paul D.;
Keasling, Jay D.;
Mukhopadhyay, Aindrila;
Petzold, Christopher J.;
Martín, Héctor García

Publication type:

Article

Guide RNA structure design enables combinatorial CRISPRa programs for biosynthetic profiling.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-50528-1

By:

Fontana, Jason;
Sparkman-Yager, David;
Faulkner, Ian;
Cardiff, Ryan;
Kiattisewee, Cholpisit;
Walls, Aria;
Primo, Tommy G.;
Kinnunen, Patrick C.;
Garcia Martin, Hector;
Zalatan, Jesse G.;
Carothers, James M.

Publication type:

Article

Accurate phylogenetic classification of variable-length DNA fragments.

Published in:

Nature Methods, 2007, v. 4, n. 1, p. 63, doi. 10.1038/nmeth976

By:

McHardy, Alice Carolyn;
Martín, Héctor García;
Tsirigos, Aristotelis;
Hugenholtz, Philip;
Rigoutsos, Isidore

Publication type:

Article

ClusterCAD 2.0: an updated computational platform for chimeric type I polyketide synthase and nonribosomal peptide synthetase design.

Published in:

Nucleic Acids Research, 2023, v. 51, n. D1, p. D532, doi. 10.1093/nar/gkac1075

By:

Tao, Xavier B;
LaFrance, Sarah;
Xing, Yifei;
Nava, Alberto A;
Martin, Hector Garcia;
Keasling, Jay D;
Backman, Tyler W H

Publication type:

Article

ClusterCAD: a computational platform for type I modular polyketide synthase design.

Published in:

Nucleic Acids Research, 2018, v. 46, n. D1, p. D509, doi. 10.1093/nar/gkx893

By:

Eng, Clara H;
Backman, Tyler W H;
Bailey, Constance B;
Magnan, Christophe;
García Martín, Héctor;
Katz, Leonard;
Baldi, Pierre;
Keasling, Jay D

Publication type:

Article

Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite.

Published in:

Nature, 2007, v. 450, n. 7169, p. 560, doi. 10.1038/nature06269

By:

Warnecke, Falk;
Luginbühl, Peter;
Ivanova, Natalia;
Ghassemian, Majid;
Richardson, Toby H.;
Stege, Justin T.;
Cayouette, Michelle;
McHardy, Alice C.;
Djordjevic, Gordana;
Aboushadi, Nahla;
Sorek, Rotem;
Tringe, Susannah G.;
Podar, Mircea;
Martin, Hector Garcia;
Kunin, Victor;
Dalevi, Daniel;
Madejska, Julita;
Kirton, Edward;
Platt, Darren;
Szeto, Ernest

Publication type:

Article

Scalable and automated CRISPR-based strain engineering using droplet microfluidics.

Published in:

Microsystems & Nanoengineering, 2022, v. 8, n. 1, p. 1, doi. 10.1038/s41378-022-00357-3

By:

Iwai, Kosuke;
Wehrs, Maren;
Garber, Megan;
Sustarich, Jess;
Washburn, Lauren;
Costello, Zachary;
Kim, Peter W.;
Ando, David;
Gaillard, William R.;
Hillson, Nathan J.;
Adams, Paul D.;
Mukhopadhyay, Aindrila;
Garcia Martin, Hector;
Singh, Anup K.

Publication type:

Article

Technological status of prickly pear (Opuntia ficus-indica Mill.) fermentation to increase the protein value of its fodder.

Published in:

Agro Productividad, 2024, v. 17, n. 7, p. 173, doi. 10.32854/agrop.v17i7.2858

By:

Cortés Chamorro, Marco Antonio;
Rössel Kipping, Erich D.;
Loera-Alvarado, Gerardo;
Calzada-Lara, Gabriel;
Laurel, Hipólito Ortiz;
Durán García, Héctor Martín;
Morales Flores, Francisco J.

Publication type:

Article

Advances in analysis of microbial metabolic fluxes via 13C isotopic labeling.

Published in:

Mass Spectrometry Reviews, 2009, v. 28, n. 2, p. 362, doi. 10.1002/mas.20191

By:

Tang, Yinjie J.;
Martin, Hector Garcia;
Myers, Samuel;
Rodriguez, Sarah;
Baidoo, Edward E.K.;
Keasling, Jay D.

Publication type:

Article

Metabolic flux analysis of Shewanella spp. reveals evolutionary robustness in central carbon metabolism.

Published in:

Biotechnology & Bioengineering, 2009, v. 102, n. 4, p. 1161, doi. 10.1002/bit.22129

By:

Tang, Yinjie J.;
Martin, Hector Garcia;
Dehal, Paramvir S.;
Deutschbauer, Adam;
Llora, Xavier;
Meadows, Adam;
Arkin, Adam;
Keasling, Jay. D.

Publication type:

Article

Cálculo del balance de energía para higuerilla (Ricinus communis L.) desde las etapas de producción en campo hasta el valor energético de cada componente de la planta.

Published in:

Nova Scientia, 2017, v. 9, n. 18, p. 43

By:

Ortíz-Laurel, Hipólito;
Rössel-Kipping, Dietmar;
Durán-García, Héctor Martín;
González-Muñoz, Liliana;
Amante-Orozco, Alejandro

Publication type:

Article

Estimación de la energía eléctrica generada en establos lecheros mediante biodigestores y paneles solares.

Published in:

Revista del Centro de Investigación. Universidad La Salle, 2023, v. 15, n. 60, p. 107, doi. 10.26457/recein.v15i60.3016

By:

Rendón Huerta, Juan Antonio;
Martín Durán García, Héctor;
García López, Juan Carlos;
Pinos Rodríguez, Juan Manuel

Publication type:

Article

Study of stationary phase metabolism via isotopomer analysis of amino acids from an isolated protein.

Published in:

Biotechnology Progress, 2010, v. 26, n. 1, p. 52, doi. 10.1002/btpr.325

By:

Shaikh, Afshan S.;
Tang, Yinjie J.;
Mukhopadhyay, Aindrila;
Martín, Héctor García;
Gin, Jennifer;
Benke, Peter I.;
Keasling, Jay D.

Publication type:

Article

Invariability of central metabolic flux distribution in Shewanella oneidensis MR-1 under environmental or genetic perturbations.

Published in:

Biotechnology Progress, 2009, v. 25, n. 5, p. 1254, doi. 10.1002/btpr.227

By:

Tang, Yinjie J.;
Martin, Hector Garcia;
Deutschbauer, Adam;
Feng, Xueyang;
Huang, Rick;
Llora, Xavier;
Arkin, Adam;
Keasling, Jay D.

Publication type:

Article

Works by Garcia Martin, Hector

Constraining Genome-Scale Models to Represent the Bow Tie Structure of Metabolism for <sup>13</sup>C Metabolic Flux Analysis.

Machine learning framework for assessment of microbial factory performance.

Structural insights into dehydratase substrate selection for the borrelidin and fluvirucin polyketide synthases.

A machine learning approach to predict metabolic pathway dynamics from time-series multiomics data.

A machine learning approach to predict metabolic pathway dynamics from time-series multiomics data.

Diseño de una picadora de pencas de maguey y nopal.

Metatranscriptomic array analysis of ‘ Candidatus Accumulibacter phosphatis’-enriched enhanced biological phosphorus removal sludge.

Estimation of microbial cover distributions at Mammoth Hot Springs using a multiple clone library resampling method.

Enabling malic acid production from corn-stover hydrolysate in Lipomyces starkeyi via metabolic engineering and bioprocess optimization.

Industrial brewing yeast engineered for the production of primary flavor determinants in hopped beer.

Examining Escherichia coli glycolytic pathways, catabolite repression, and metabolite channeling using Δpfk mutants.

Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities.

BayFlux: A Bayesian method to quantify metabolic Fluxes and their uncertainty at the genome scale.

A machine learning Automated Recommendation Tool for synthetic biology.

Combining mechanistic and machine learning models for predictive engineering and optimization of tryptophan metabolism.

A miniaturized feedstocks-to-fuels pipeline for screening the efficiency of deconstruction and microbial conversion of lignocellulosic biomass.

The JBEI quantitative metabolic modeling library (jQMM): a python library for modeling microbial metabolism.

A Method to Constrain Genome-Scale Models with <sup>13</sup>C Labeling Data.

A Peptide-Based Method for <sup>13</sup>C Metabolic Flux Analysis in Microbial Communities.

Guide RNA structure design enables combinatorial CRISPRa programs for biosynthetic profiling.

Accurate phylogenetic classification of variable-length DNA fragments.

ClusterCAD 2.0: an updated computational platform for chimeric type I polyketide synthase and nonribosomal peptide synthetase design.

ClusterCAD: a computational platform for type I modular polyketide synthase design.

Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite.

Scalable and automated CRISPR-based strain engineering using droplet microfluidics.

Technological status of prickly pear (Opuntia ficus-indica Mill.) fermentation to increase the protein value of its fodder.

Advances in analysis of microbial metabolic fluxes via <sup>13</sup>C isotopic labeling.

Metabolic flux analysis of Shewanella spp. reveals evolutionary robustness in central carbon metabolism.

Cálculo del balance de energía para higuerilla (Ricinus communis L.) desde las etapas de producción en campo hasta el valor energético de cada componente de la planta.

Estimación de la energía eléctrica generada en establos lecheros mediante biodigestores y paneles solares.

Study of stationary phase metabolism via isotopomer analysis of amino acids from an isolated protein.

Invariability of central metabolic flux distribution in Shewanella oneidensis MR-1 under environmental or genetic perturbations.