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Repeat elements organise 3D genome structure and mediate transcription in the filamentous fungus Epichloë festucae.
Published in:
PLoS Genetics, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pgen.1007467
By:
- Winter, David J.;
- Ganley, Austen R. D.;
- Young, Carolyn A.;
- Liachko, Ivan;
- Schardl, Christopher L.;
- Dupont, Pierre-Yves;
- Berry, Daniel;
- Ram, Arvina;
- Scott, Barry;
- Cox, Murray P.
Publication type:
Article
Sound Stimulation Can Affect Saccharomyces cerevisiae Growth and Production of Volatile Metabolites in Liquid Medium.
Published in:
Metabolites (2218-1989), 2021, v. 11, n. 9, p. 605, doi. 10.3390/metabo11090605
By:
- Harris, Alastair;
- Lindsay, Melodie A.;
- Ganley, Austen R. D.;
- Jeffs, Andrew;
- Villas-Boas, Silas G.
Publication type:
Article
A de novo ACTB gene pathogenic variant in identical twins with phenotypic variation for hydrops and jejunal atresia.
Published in:
American Journal of Medical Genetics. Part A, 2022, v. 188, n. 4, p. 1299, doi. 10.1002/ajmg.a.62631
By:
- Sibbin, Kristina;
- Yap, Patrick;
- Nyaga, Denis;
- Heller, Raoul;
- Evans, Stephen;
- Strachan, Kate;
- Alburaiky, Salam;
- Nguyen, Han M.;
- Hermann‐Le Denmat, Sylvie;
- Ganley, Austen R. D.;
- O'Sullivan, Justin M.;
- Bloomfield, Frank H.
Publication type:
Article
Biochar in Co-Contaminated Soil Manipulates Arsenic Solubility and Microbiological Community Structure, and Promotes Organochlorine Degradation.
Published in:
PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0125393
By:
- Gregory, Samuel J.;
- Anderson, Christopher W. N.;
- Camps-Arbestain, Marta;
- Biggs, Patrick J.;
- Ganley, Austen R. D.;
- O’Sullivan, Justin M.;
- McManus, Michael T.
Publication type:
Article
Chromosome-level assembly of the Phytophthora agathidicida genome reveals adaptation in effector gene families.
Published in:
Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.1038444
By:
- Cox, Murray P.;
- Guo, Yanan;
- Winter, David J.;
- Sen, Diya;
- Cauldron, Nicholas C.;
- Shiller, Jason;
- Bradley, Ellie L.;
- Ganley, Austen R.;
- Gerth, Monica L.;
- Lacey, Randy F.;
- McDougal, Rebecca L.;
- Panda, Preeti;
- Williams, Nari M.;
- Grunwald, Niklaus J.;
- Mesarich, Carl H.;
- Bradshaw, Rosie E.
Publication type:
Article
HyLiTE: accurate and flexible analysis of gene expression in hybrid and allopolyploid species.
Published in:
BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-014-0433-8
By:
- Duchemin, Wandrille;
- Dupont, Pierre-Yves;
- Campbell, Matthew A.;
- Ganley, Austen R. D.;
- Cox, Murray P.
Publication type:
Article
HyLiTE: accurate and flexible analysis of gene expression in hybrid and allopolyploid species.
Published in:
BMC Bioinformatics, 2015, v. 16, n. 1, p. 216, doi. 10.1186/s12859-014-0433-8
By:
- Duchemin, Wandrille;
- Dupont, Pierre-Yves;
- Campbell, Matthew A.;
- Ganley, Austen R. D.;
- Cox, Murray P.
Publication type:
Article
The Effect of Sound Frequency and Intensity on Yeast Growth, Fermentation Performance and Volatile Composition of Beer.
Published in:
Molecules, 2021, v. 26, n. 23, p. 7239, doi. 10.3390/molecules26237239
By:
- Adadi, Parise;
- Harris, Alastair;
- Bremer, Phil;
- Silcock, Patrick;
- Ganley, Austen R. D.;
- Jeffs, Andrew G.;
- Eyres, Graham T.
Publication type:
Article
Cross‐kingdom transcriptomic trends in the evolution of hybrid gene expression.
Published in:
Journal of Evolutionary Biology, 2022, v. 35, n. 8, p. 1126, doi. 10.1111/jeb.14059
By:
- Behling, Anna H.;
- Winter, David J.;
- Ganley, Austen R. D.;
- Cox, Murray P.
Publication type:
Article
Multilocus sequence typing suggests the chytrid pathogen of amphibians is a recently emerged clone.
Published in:
Molecular Ecology, 2003, v. 12, n. 2, p. 395, doi. 10.1046/j.1365-294X.2003.01732.x
By:
- Morehouse, Erica A.;
- James, Timothy Y.;
- Ganley, Austen R. D.;
- Vilgalys, Rytas;
- Berger, Lee;
- Murphy, Peter J.;
- Longcore, Joyce E.
Publication type:
Article
Resolving Arthropod Phylogeny: Exploring Phylogenetic Signal within 41 kb of Protein-Coding Nuclear Gene Sequence.
Published in:
Systematic Biology, 2008, v. 57, n. 6, p. 920, doi. 10.1080/10635150802570791
By:
- Regier, Jerome C.;
- Shultz, Jeffrey W.;
- Ganley, Austen R. D.;
- Hussey, April;
- Shi, Diane;
- Ball, Bernard;
- Zwick, Andreas;
- Stajich, Jason E.;
- Cummings, Michael P.;
- Martin, Joel W.;
- Cunningham, Clifford W.
Publication type:
Article
Striving for clarity about the “Lamarckian” nature of CRISPR-Cas systems.
Published in:
Biology & Philosophy, 2019, v. 34, n. 1, p. 1, doi. 10.1007/s10539-018-9662-y
By:
- Woolley, Sam;
- Parke, Emily C.;
- Kelley, David;
- Poole, Anthony M.;
- Ganley, Austen R. D.
Publication type:
Article
Changes in long-range rDNA-genomic interactions associate with altered RNA polymerase II gene programs during malignant transformation.
Published in:
Communications Biology, 2019, v. 2, n. 1, p. N.PAG, doi. 10.1038/s42003-019-0284-y
By:
- Diesch, Jeannine;
- Bywater, Megan J.;
- Sanij, Elaine;
- Cameron, Donald P.;
- Schierding, William;
- Brajanovski, Natalie;
- Son, Jinbae;
- Sornkom, Jirawas;
- Hein, Nadine;
- Evers, Maurits;
- Pearson, Richard B.;
- McArthur, Grant A.;
- Ganley, Austen R. D.;
- O'Sullivan, Justin M.;
- Hannan, Ross D.;
- Poortinga, Gretchen
Publication type:
Article
Origin and maintenance of large ribosomal RNA gene repeat size in mammals.
Published in:
Genetics, 2024, v. 228, n. 1, p. 1, doi. 10.1093/genetics/iyae121
By:
- Macdonald, Emma;
- Whibley, Annabel;
- Waters, Paul D;
- Patel, Hardip;
- Edwards, Richard J;
- Ganley, Austen R D
Publication type:
Article
Direct liquid transmission of sound has little impact on fermentation performance in Saccharomyces cerevisiae.
Published in:
PLoS ONE, 2023, v. 17, n. 2, p. 1, doi. 10.1371/journal.pone.0281762
By:
- Benitez, Rachel;
- Harris, Alastair;
- Mansfield, Evie;
- Silcock, Pat;
- Eyres, Graham;
- Villas-Bôas, Silas G.;
- Jeffs, Andrew;
- Ganley, Austen R. D.
Publication type:
Article
An Interspecific Fungal Hybrid Reveals Cross-Kingdom Rules for Allopolyploid Gene Expression Patterns.
Published in:
PLoS Genetics, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pgen.1004180
By:
- Cox, Murray P.;
- Dong, Ting;
- Shen, GengGeng;
- Dalvi, Yogesh;
- Scott, D. Barry;
- Ganley, Austen R. D.
Publication type:
Article
The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry.
Published in:
PLoS Genetics, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pgen.1003088
By:
- de Wit, Pierre J. G. M.;
- van der Burgt, Ate;
- Ökmen, Bilal;
- Stergiopoulos, Ioannis;
- Abd-Elsalam, Kamel A.;
- Aerts, Andrea L.;
- Bahkali, Ali H.;
- Beenen, Henriek G.;
- Chettri, Pranav;
- Cox, Murray P.;
- Datema, Erwin;
- de Vries, Ronald P.;
- Dhillon, Braham;
- Ganley, Austen R.;
- Griffiths, Scott A.;
- Guo, Yanan;
- Hamelin, Richard C.;
- Henrissat, Bernard;
- Kabir, M. Shahjahan;
- Jashni, Mansoor Karimi
Publication type:
Article
Telomere-to-Telomere Genome Sequences across a Single Genus Reveal Highly Variable Chromosome Rearrangement Rates but Absolute Stasis of Chromosome Number.
Published in:
Journal of Fungi, 2022, v. 8, n. 7, p. 670, doi. 10.3390/jof8070670
By:
- Quenu, Mathieu;
- Treindl, Artemis D.;
- Lee, Kate;
- Takemoto, Daigo;
- Thünen, Torsten;
- Ashrafi, Samad;
- Winter, David;
- Ganley, Austen R. D.;
- Leuchtmann, Adrian;
- Young, Carolyn A.;
- Cox, Murray P.
Publication type:
Article
Fragmentation of an aflatoxin-like gene cluster in a forest pathogen.
Published in:
New Phytologist, 2013, v. 198, n. 2, p. 525, doi. 10.1111/nph.12161
By:
- Bradshaw, Rosie E.;
- Slot, Jason C.;
- Moore, Geromy G.;
- Chettri, Pranav;
- Wit, Pierre J. G. M.;
- Ehrlich, Kenneth C.;
- Ganley, Austen R. D.;
- Olson, Malin A.;
- Rokas, Antonis;
- Carbone, Ignazio;
- Cox, Murray P.
Publication type:
Article
A positive role for yeast extrachromosomal rDNA circles?
Published in:
BioEssays, 2012, v. 34, n. 9, p. 725, doi. 10.1002/bies.201200037
By:
- Poole, Anthony M.;
- Kobayashi, Takehiko;
- Ganley, Austen R. D.
Publication type:
Article
The conservation landscape of the human ribosomal RNA gene repeats.
Published in:
PLoS ONE, 2018, v. 13, n. 12, p. 1, doi. 10.1371/journal.pone.0207531
By:
- Agrawal, Saumya;
- Ganley, Austen R. D.
Publication type:
Article
Correction: The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry.
Published in:
2015
By:
- de Wit, Pierre J. G. M.;
- van der Burgt, Ate;
- Ökmen, Bilal;
- Stergiopoulos, Ioannis;
- Abd-Elsalam, Kamel A.;
- Aerts, Andrea L.;
- Bahkali, Ali H.;
- Beenen, Henriek G.;
- Chettri, Pranav;
- Cox, Murray P.;
- Datema, Erwin;
- de Vries, Ronald P.;
- Dhillon, Braham;
- Ganley, Austen R.;
- Griffiths, Scott A.;
- Guo, Yanan;
- Hamelin, Richard C.;
- Henrissat, Bernard;
- Kabir, M. Shahjahan;
- Jashni, Mansoor Karimi
Publication type:
Correction Notice

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