Works by Gaeta, Bruno

Results: 25

ISCB's initial reaction to New England Journal of Medicine editorial on data sharing.

Published in:

2017

By:

Berger, Bonnie;
Gaasterland, Theresa;
Lengauer, Thomas;
Orengo, Christine A.;
Gaeta, Bruno;
Markel, Scott;
Valencia, Alfonso

Publication type:

Editorial

Improved VCF normalization for accurate VCF comparison.

Published in:

Bioinformatics, 2017, v. 33, n. 7, p. 964, doi. 10.1093/bioinformatics/btw748

By:

Bayat, Arash;
Gaëta, Bruno;
Ignjatovic, Aleksandar;
Parameswaran, Sri

Publication type:

Article

The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 140, doi. 10.1093/bioinformatics/btu601

By:

Corpas, Manuel;
Jimenez, Rafael C.;
Bongcam-Rudloff, Erik;
Budd, Aidan;
Brazas, Michelle D.;
Fernandes, Pedro L.;
Gaeta, Bruno;
van Gelder, Celia;
Korpelainen, Eija;
Lewitter, Fran;
McGrath, Annette;
MacLean, Daniel;
Palagi, Patricia M.;
Rother, Kristian;
Taylor, Jan;
Via, Allegra;
Watson, Mick;
Schneider, Maria Victoria;
Attwood, Teresa K.

Publication type:

Article

Benchmarking the performance of human antibody gene alignment utilities using a 454 sequence dataset.

Published in:

Bioinformatics, 2010, v. 26, n. 24, p. 3129, doi. 10.1093/bioinformatics/btq604

By:

Jackson, Katherine J. L.;
Boyd, Scott;
Gaëta, Bruno A.;
Collins, Andrew M.

Publication type:

Article

iHMMune-align: hidden Markov model-based alignment and identification of germline genes in rearranged immunoglobulin gene sequences.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. 1580, doi. 10.1093/bioinformatics/btm147

By:

Bruno A. Gaëta;
Harald R. Malming;
Katherine J.L. Jackson;
Michael E. Bain;
Patrick Wilson;
Andrew M. Collins

Publication type:

Article

MINER: exploratory analysis of gene interaction networks by machine learning from expression data.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S3-S17

By:

Kadupitige, Sidath Randeni;
Kin Chun Leung;
Sellmeier, Julia;
Sivieng, Jane;
Catchpoole, Daniel R.;
Bain, Michael E.;
Gaëta, Bruno A

Publication type:

Article

Fld1p, a functional homologue of human seipin, regulates the size of lipid droplets in yeast.

Published in:

Journal of Cell Biology, 2008, v. 180, n. 3, p. 473, doi. 10.1083/jcb.200711136

By:

Weihua Fei;
Guanghou Shui;
Gaeta, Bruno;
Ximing Du;
Kuerschner, Lars;
Peng Li;
Brown, Andrew J.;
Wenk, Markus R.;
Parton, Robert G.;
Hongyuan Yang

Publication type:

Article

IgE-Associated IGHV Genes from Venom and Peanut Allergic Individuals Lack Mutational Evidence of Antigen Selection.

Published in:

PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0089730

By:

Wang, Yan;
Jackson, Katherine J. L.;
Davies, Janet;
Chen, Zhiliang;
Gaeta, Bruno A.;
Rimmer, Janet;
Sewell, William A.;
Collins, Andrew M.

Publication type:

Article

Art in Science Competition invites artworks to the annual exhibition on ISMB 2018 in Chicago.

Published in:

2018

By:

Frenkel-Morgenstern, Milana;
Welch, Lonnie;
Gaeta, Bruno;
Kovats, Diane E.

Publication type:

Proceeding

The development and application of bioinformatics core competencies to improve bioinformatics training and education.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005772

By:

Mulder, Nicola;
Schwartz, Russell;
Brazas, Michelle D.;
Brooksbank, Cath;
Gaeta, Bruno;
Morgan, Sarah L.;
Pauley, Mark A.;
Rosenwald, Anne;
Rustici, Gabriella;
Sierk, Michael;
Warnow, Tandy;
Welch, Lonnie

Publication type:

Article

Divergent human populations show extensive shared IGK rearrangements in peripheral blood B cells.

Published in:

Immunogenetics, 2012, v. 64, n. 1, p. 3, doi. 10.1007/s00251-011-0559-z

By:

Jackson, Katherine;
Wang, Yan;
Gaeta, Bruno;
Pomat, William;
Siba, Peter;
Rimmer, Janet;
Sewell, William;
Collins, Andrew

Publication type:

Article

Genomic screening by 454 pyrosequencing identifies a new human IGHV gene and sixteen other new IGHV allelic variants.

Published in:

Immunogenetics, 2011, v. 63, n. 5, p. 259, doi. 10.1007/s00251-010-0510-8

By:

Wang, Yan;
Jackson, Katherine;
Gäeta, Bruno;
Pomat, William;
Siba, Peter;
Sewell, William;
Collins, Andrew

Publication type:

Article

The ISCB competency framework v. 3: a revised and extended standard for bioinformatics education and training.

Published in:

Bioinformatics Advances, 2024, v. 4, n. 1, p. 1, doi. 10.1093/bioadv/vbae166

By:

Brooksbank, Cath;
Brazas, Michelle D;
Mulder, Nicola;
Schwartz, Russell;
Ras, Verena;
Morgan, Sarah L;
Llinares, Marta Lloret;
López, Patricia Carvajal;
Larcombe, Lee;
Ghouila, Amel;
Hancocks, Tom;
Satagopam, Venkata;
Rivas, Javier De Las;
Mazandu, Gaston;
Gaeta, Bruno

Publication type:

Article

Prediction of Antibody-Antigen Binding via Machine Learning: Development of Data Sets and Evaluation of Methods.

Published in:

JMIR Bioinformatics & Biotechnology, 2022, v. 3, n. 1, p. 1, doi. 10.2196/29404

By:

Chao Ye;
Wenxing Hu;
Gaeta, Bruno

Publication type:

Article

Book reviews.

Published in:

2002

By:

Gaeta, Bruno;
Lloyd, Andrew T.;
Attimonelli, Marcella

Publication type:

Book Review

Exonuclease activity and P nucleotide addition in the generation of the expressed immunoglobulin repertoire.

Published in:

BMC Immunology, 2004, v. 5, p. 19, doi. 10.1186/1471-2172-5-19

By:

Jackson, Katherine J. L.;
Gaeta, Bruno;
Sewell, William;
Collins, Andrew M.

Publication type:

Article

Applying, Evaluating and Refining Bioinformatics Core Competencies (An Update from the Curriculum Task Force of ISCB’s Education Committee).

Published in:

PLoS Computational Biology, 2016, v. 12, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004943

By:

Welch, Lonnie;
Brooksbank, Cath;
Schwartz, Russell;
Morgan, Sarah L.;
Gaeta, Bruno;
Kilpatrick, Alastair M.;
Mietchen, Daniel;
Moore, Benjamin L.;
Mulder, Nicola;
Pauley, Mark;
Pearson, William;
Radivojac, Predrag;
Rosenberg, Naomi;
Rosenwald, Anne;
Rustici, Gabriella;
Warnow, Tandy

Publication type:

Article

ISCB’s Initial Reaction to The New England Journal of Medicine Editorial on Data Sharing.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004816

By:

Berger, Bonnie;
Gaasterland, Terry;
Lengauer, Thomas;
Orengo, Christine;
Gaeta, Bruno;
Markel, Scott;
Valencia, Alfonso

Publication type:

Article

Bioinformatics Curriculum Guidelines: Toward a Definition of Core Competencies.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003496

By:

Welch, Lonnie;
Lewitter, Fran;
Schwartz, Russell;
Brooksbank, Cath;
Radivojac, Predrag;
Gaeta, Bruno;
Schneider, Maria Victoria

Publication type:

Article

Chlorogenic acid attenuates virulence factors and pathogenicity of Pseudomonas aeruginosa by regulating quorum sensing.

Published in:

Applied Microbiology & Biotechnology, 2019, v. 103, n. 2, p. 903, doi. 10.1007/s00253-018-9482-7

By:

Wang, Hong;
Chu, Weihua;
Ye, Chao;
Gaeta, Bruno;
Tao, Huimin;
Wang, Min;
Qiu, Zheng

Publication type:

Article

Combining spatial and chemical information for clustering pharmacophores.

Published in:

BMC Bioinformatics, 2014, v. 15, n. Suppl 16, p. 1, doi. 10.1186/1471-2105-15-S16-S5

By:

Lingxiao Zhou;
Griffith, Renate;
Gaeta, Bruno

Publication type:

Article

Gentrepid V2.0: a web server for candidate disease gene prediction.

Published in:

BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-249

By:

Ballouz, Sara;
Liu, Jason Y.;
George, Richard A.;
Bains, Naresh;
Liu, Arthur;
Oti, Martin;
Gaeta, Bruno;
Fatkin, Diane;
Wouters, Merridee A.

Publication type:

Article

Pairwise alignment of nucleotide sequences using maximal exact matches.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-2827-0

By:

Bayat, Arash;
Gaëta, Bruno;
Ignjatovic, Aleksandar;
Parameswaran, Sri

Publication type:

Article

Grand challenges in bioinformatics education and training.

Published in:

Nature Biotechnology, 2023, v. 41, n. 8, p. 1171, doi. 10.1038/s41587-023-01891-9

By:

Işık, Esra Büşra;
Brazas, Michelle D.;
Schwartz, Russell;
Gaeta, Bruno;
Palagi, Patricia M.;
van Gelder, Celia W. G.;
Suravajhala, Prashanth;
Singh, Harpreet;
Morgan, Sarah L.;
Zahroh, Hilyatuz;
Ling, Maurice;
Satagopam, Venkata P.;
McGrath, Annette;
Nakai, Kenta;
Tan, Tin Wee;
Gao, Ge;
Mulder, Nicola;
Schönbach, Christian;
Zheng, Yun;
De Las Rivas, Javier

Publication type:

Article

Ten simple rules for forming a scientific professional society.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005226

By:

Gaëta, Bruno A.;
De Las Rivas, Javier;
Horton, Paul;
Meysman, Pieter;
Mulder, Nicola;
Romano, Paolo;
Welch, Lonnie

Publication type:

Article