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Wikidata as a knowledge graph for the life sciences.
Published in:
eLife, 2020, p. 1, doi. 10.7554/eLife.52614
By:
- WAAGMEESTER, ANDRA;
- STUPP, GREGORY;
- BURGSTALLER-MUEHLBACHER, SEBASTIAN;
- GOOD, BENJAMIN M.;
- GRIFFITH, MALACHI;
- GRIFFITH, OBI L.;
- HANSPERS, KRISTINA;
- HERMJAKOB, HENNING;
- HUDSON, TOBY S.;
- HYBISKE, KEVIN;
- KEATING, SARAH M.;
- MANSKE, MAGNUS;
- MAYERS, MICHAEL;
- MIETCHEN, DANIEL;
- MITRAKA, ELVIRA;
- PICO, ALEXANDER R.;
- PUTMAN, TIMOTHY;
- RIUTTA, ANDERS;
- QUERALT-ROSINACH, NURIA;
- SCHRIML, LYNN M.
Publication type:
Article
The Gene Wiki in 2011: community intelligence applied to human gene annotation.
Published in:
Nucleic Acids Research, 2012, p. D1255, doi. 10.1093/nar/gkr925
By:
- Good, Benjamin M.;
- Clarke, Erik L.;
- de Alfaro, Luca;
- Su, Andrew I.
Publication type:
Article
Reactome and the Gene Ontology: digital convergence of data resources.
Published in:
Bioinformatics, 2021, v. 37, n. 19, p. 3343, doi. 10.1093/bioinformatics/btab325
By:
- Good, Benjamin M;
- Auken, Kimberly Van;
- Hill, David P;
- Mi, Huaiyu;
- Carbon, Seth;
- Balhoff, James P;
- Albou, Laurent-Philippe;
- Thomas, Paul D;
- Mungall, Christopher J;
- Blake, Judith A;
- D'Eustachio, Peter
Publication type:
Article
The Life Sciences Semantic Web is Full of Creeps!
Published in:
Briefings in Bioinformatics, 2006, v. 7, n. 3, p. 275, doi. 10.1093/bib/bbl025
By:
- Good, Benjamin M.;
- Wilkinson, Mark D.
Publication type:
Article
A task-based approach for Gene Ontology evaluation.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. Suppl 1, p. 1, doi. 10.1186/2041-1480-4-S1-S4
By:
- Clarke, Erik L.;
- Loguercio, Salvatore;
- Good, Benjamin M.;
- Su, Andrew I.
Publication type:
Article
Linking genes to diseases with a SNPedia-Gene Wiki mashup.
Published in:
Journal of Biomedical Semantics, 2012, v. 3, n. Suppl 1, p. 1, doi. 10.1186/2041-1480-3-S1-S6
By:
- Good, Benjamin M.;
- Clarke, Erik L.;
- Loguercio, Salvatore;
- Su, Andrew I.
Publication type:
Article
Dizeez: An Online Game for Human Gene-Disease Annotation.
Published in:
PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0071171
By:
- Loguercio, Salvatore;
- Good, Benjamin M.;
- Su, Andrew I.
Publication type:
Article
Structured reviews for data and knowledge-driven research.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa015
By:
- Queralt-Rosinach, Núria;
- Stupp, Gregory S;
- Li, Tong Shu;
- Mayers, Michael;
- Hoatlin, Maureen E;
- Might, Matthew;
- Good, Benjamin M;
- Su, Andrew I
Publication type:
Article
ChlamBase: a curated model organism database for the Chlamydia research community.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz091
By:
- Putman, Tim;
- Hybiske, Kevin;
- Jow, Derek;
- Afrasiabi, Cyrus;
- Lelong, Sebastien;
- Cano, Marco Alvarado;
- Stupp, Gregory S;
- Waagmeester, Andra;
- Good, Benjamin M;
- Wu, Chunlei;
- Su, Andrew I
Publication type:
Article
ChlamBase: a curated model organism database for the Chlamydia research community.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz041
By:
- Putman, Tim;
- Hybiske, Kevin;
- Jow, Derek;
- Afrasiabi, Cyrus;
- Lelong, Sebastien;
- Cano, Marco Alvarado;
- Stupp, Gregory S;
- Waagmeester, Andra;
- Good, Benjamin M;
- Wu, Chunlei;
- Su, Andrew I
Publication type:
Article
WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax025
By:
- Putman, Tim E.;
- Lelong, Sebastien;
- Burgstaller-Muehlbacher, Sebastian;
- Waagmeester, Andra;
- Diesh, Colin;
- Dunn, Nathan;
- Munoz-Torres, Monica;
- Stupp, Gregory S.;
- Chunlei Wu;
- Su, Andrew I.;
- Good, Benjamin M.
Publication type:
Article
Centralizing content and distributing labor: a community model for curating the very long tail of microbial genomes.
Published in:
Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw028
By:
- Putman, Tim E.;
- Burgstaller-Muehlbacher, Sebastian;
- Waagmeester, Andra;
- Chunlei Wu;
- Su, Andrew I.;
- Good, Benjamin M.
Publication type:
Article
A crowdsourcing workflow for extracting chemical-induced disease relations from free text.
Published in:
Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw051
By:
- Tong Shu Li;
- Bravo, Àlex;
- Furlong, Laura I.;
- Good, Benjamin M.;
- Su, Andrew I.
Publication type:
Article
Wikidata as a semantic framework for the Gene Wiki initiative.
Published in:
Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw015
By:
- Burgstaller-Muehlbacher, Sebastian;
- Waagmeester, Andra;
- Mitraka, Elvira;
- Turner, Julia;
- Putman, Tim;
- Leong, Justin;
- Naik, Chinmay;
- Pavlidis, Paul;
- Schriml, Lynn;
- Good, Benjamin M.;
- Su, Andrew I.
Publication type:
Article
Combining machine learning, crowdsourcing and expert knowledge to detect chemical-induced diseases in text.
Published in:
Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw094
By:
- Bravo, Alex;
- Tong Shu Li;
- Su, Andrew I.;
- Good, Benjamin M.;
- Furlong, Laura I.
Publication type:
Article
Building a biomedical semantic network in Wikipedia with Semantic Wiki Links.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bar060
By:
- Good, Benjamin M.;
- Clarke, Erik L.;
- Loguercio, Salvatore;
- Su, Andrew I.
Publication type:
Article
Knowledge Beacons: Web services for data harvesting of distributed biomedical knowledge.
Published in:
PLoS ONE, 2021, v. 16, n. 3, p. 1, doi. 10.1371/journal.pone.0231916
By:
- Hannestad, Lance M.;
- Dančík, Vlado;
- Godden, Meera;
- Suen, Imelda W.;
- Huellas-Bruskiewicz, Kenneth C.;
- Good, Benjamin M.;
- Mungall, Christopher J.;
- Bruskiewich, Richard M.
Publication type:
Article
iHOPerator: user-scripting a personalized bioinformatics Web, starting with the iHOP website.
Published in:
BMC Bioinformatics, 2006, v. 7, p. 534, doi. 10.1186/1471-2105-7-534
By:
- Good, Benjamin M;
- Kawas, Edward A;
- Yu-Lin Kuo, Byron;
- Wilkinson, Mark D
Publication type:
Article
Genetic attributes of cerebrospinal fluid-derived HIV-1 env.
Published in:
Brain: A Journal of Neurology, 2006, v. 129, n. 7, p. 1872, doi. 10.1093/brain/awl136
By:
- Satish K. Pillai;
- Sergei L. Kosakovsky Pond;
- Yang Liu;
- Benjamin M. Good;
- Matthew C. Strain;
- Ronald J. Ellis;
- Scott Letendre;
- Davey M. Smith;
- Huldrych F. Günthard;
- Igor Grant;
- Thomas D. Marcotte;
- J. Allen McCutchan;
- Douglas D. Richman;
- Joseph K. Wong
Publication type:
Article
Ten Simple Rules for Cultivating Open Science and Collaborative R&D.
Published in:
2013
By:
- Masum, Hassan;
- Rao, Aarthi;
- Good, Benjamin M.;
- Todd, Matthew H.;
- Edwards, Aled M.;
- Chan, Leslie;
- Bunin, Barry A.;
- Su, Andrew I.;
- Thomas, Zakir;
- Bourne, Philip E.
Publication type:
Editorial
Crowdsourcing in biomedicine: challenges and opportunities.
Published in:
Briefings in Bioinformatics, 2016, v. 17, n. 1, p. 23, doi. 10.1093/bib/bbv021
By:
- Khare, Ritu;
- Good, Benjamin M.;
- Leaman, Robert;
- Su, Andrew I.;
- Zhiyong Lu
Publication type:
Article
Organizing knowledge to enable personalization of medicine in cancer.
Published in:
Genome Biology, 2014, v. 15, n. 7, p. 438, doi. 10.1186/s13059-014-0438-7
By:
- Good, Benjamin M.;
- Ainscough, Benjamin J.;
- McMichael, Josh F.;
- Su, Andrew I.;
- Griffith, Obi L.
Publication type:
Article
Games with a scientific purpose.
Published in:
Genome Biology, 2011, v. 12, n. 12, p. 135, doi. 10.1186/gb-2011-12-12-135
By:
- Good, Benjamin M.;
- Su, Andrew I.
Publication type:
Article
The Implicitome: A Resource for Rationalizing Gene-Disease Associations.
Published in:
PLoS ONE, 2016, v. 11, n. 2, p. 1, doi. 10.1371/journal.pone.0149621
By:
- Hettne, Kristina M.;
- Thompson, Mark;
- van Haagen, Herman H. H. B. M.;
- van der Horst, Eelke;
- Kaliyaperumal, Rajaram;
- Mina, Eleni;
- Tatum, Zuotian;
- Laros, Jeroen F. J.;
- van Mulligen, Erik M.;
- Schuemie, Martijn;
- Aten, Emmelien;
- Li, Tong Shu;
- Bruskiewich, Richard;
- Good, Benjamin M.;
- Su, Andrew I.;
- Kors, Jan A.;
- den Dunnen, Johan;
- van Ommen, Gert-Jan B.;
- Roos, Marco;
- ‘t Hoen, Peter A.C.
Publication type:
Article
Applying citizen science to gene, drug and disease relationship extraction from biomedical abstracts.
Published in:
Bioinformatics, 2020, v. 36, n. 4, p. 1226, doi. 10.1093/bioinformatics/btz678
By:
- Tsueng, Ginger;
- Nanis, Max;
- Fouquier, Jennifer T;
- Mayers, Michael;
- Good, Benjamin M;
- Su, Andrew I
Publication type:
Article
Branch: an interactive, web-based tool for testing hypotheses and developing predictive models.
Published in:
Bioinformatics, 2016, v. 32, n. 13, p. 2072, doi. 10.1093/bioinformatics/btw117
By:
- Gangavarapu, Karthik;
- Babji, Vyshakh;
- Meißner, Tobias;
- Su, Andrew I.;
- Good, Benjamin M.
Publication type:
Article
Crowdsourcing for bioinformatics.
Published in:
Bioinformatics, 2013, v. 29, n. 16, p. 1925, doi. 10.1093/bioinformatics/btt333
By:
- Good, Benjamin M.;
- Su, Andrew I.
Publication type:
Article

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