Works by Göker, Markus

Results: 104
    1

    Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains.

    Published in:
    PLoS Biology, 2014, v. 12, n. 8, p. 1, doi. 10.1371/journal.pbio.1001920
    By:
    • Kyrpides, Nikos C.;
    • Hugenholtz, Philip;
    • Eisen, Jonathan A.;
    • Woyke, Tanja;
    • Göker, Markus;
    • Parker, Charles T.;
    • Amann, Rudolf;
    • Beck, Brian J.;
    • Chain, Patrick S. G.;
    • Chun, Jongsik;
    • Colwell, Rita R.;
    • Danchin, Antoine;
    • Dawyndt, Peter;
    • Dedeurwaerdere, Tom;
    • DeLong, Edward F.;
    • Detter, John C.;
    • De Vos, Paul;
    • Donohue, Timothy J.;
    • Dong, Xiu-Zhu;
    • Ehrlich, Dusko S.
    Publication type:
    Article
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    Complete genome sequence of Jiangella gansuensis strain YIM 002<sup>T</sup> (DSM 44835<sup>T</sup>), the type species of the genus Jiangella and source of new antibiotic compounds.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0226-6
    By:
    • Jian-Yu Jiao;
    • Carro, Lorena;
    • Lan Liu;
    • Xiao-Yang Gao;
    • Xiao-Tong Zhang;
    • Hozzein, Wael N.;
    • Lapidus, Alla;
    • Huntemann, Marcel;
    • Reddy, T. B. K.;
    • Varghese, Neha;
    • Hadjithomas, Michalis;
    • Ivanova, Natalia N.;
    • Göker, Markus;
    • Pillay, Manoj;
    • Eisen, Jonathan A.;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Wen-Jun Li
    Publication type:
    Article
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    High quality draft genome sequences of Pseudomonas fulva DSM 17717<sup>T</sup>, Pseudomonas parafulva DSM 17004<sup>T</sup> and Pseudomonas cremoricolorata DSM 17059<sup>T</sup> type strains.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0178-2
    By:
    • Peña, Arantxa;
    • Busquets, Antonio;
    • Gomila, Margarita;
    • Mulet, Magdalena;
    • Gomila, Rosa M.;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Markowitz, Victor;
    • García-Valdés, Elena;
    • Göker, Markus;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos;
    • Lalucat, Jorge
    Publication type:
    Article
    10

    High-quality draft genome sequence of Flavobacterium suncheonense GH29-5<sup>T</sup> (DSM 17707<sup>T</sup>) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5<sup>T</sup>.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0159-5
    By:
    • Tashkandy, Nisreen;
    • Sabban, Sari;
    • Fakieh, Mohammad;
    • Meier-Kolthoff, Jan P.;
    • Sixing Huang;
    • Tindall, Brian J.;
    • Rohde, Manfred;
    • Baeshen, Mohammed N.;
    • Baeshen, Nabih A.;
    • Lapidus, Alla;
    • Copeland, Alex;
    • Pillay, Manoj;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Göker, Markus;
    • Klenk, Hans-Peter
    Publication type:
    Article
    11

    Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050<sup>T</sup> (DSM 19838<sup>T</sup>) and Gramella portivictoriae UST040801-001<sup>T</sup> (DSM 23547<sup>T</sup>), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0163-9
    By:
    • Panschin, Irina;
    • Sixing Huang;
    • Meier-Kolthoff, Jan P.;
    • Tindall, Brian J.;
    • Rohde, Manfred;
    • Verbarg, Susanne;
    • Lapidus, Alla;
    • Han, James;
    • Trong, Stephan;
    • Haynes, Matthew;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Mavromatis, Konstantinos;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Göker, Markus;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.
    Publication type:
    Article
    12

    Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477<sup>T</sup>).

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0162-x
    By:
    • Kappler, Ulrike;
    • Davenport, Karen;
    • Beatson, Scott;
    • Lapidus, Alla;
    • Pan, Chongle;
    • Han, Cliff;
    • del Carmen Montero-Calasanz, Maria;
    • Land, Miriam;
    • Hauser, Loren;
    • Rohde, Manfred;
    • Göker, Markus;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.
    Publication type:
    Article
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    High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1<sup>T</sup> (DSM 17521<sup>T</sup>) isolated from muddy waters of a drainage system in Chandigarh, India.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-8
    By:
    • Mukherjee, Supratim;
    • Lapidus, Alla;
    • Shapiro, Nicole;
    • Jan-Fang Cheng;
    • Han, James;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Amy Chen;
    • Palaniappan, Krishna;
    • Spring, Stefan;
    • Göker, Markus;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Tindall, Brian J.;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Pati, Amrita
    Publication type:
    Article
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    Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252 isolated from marine sediment.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 687, doi. 10.4056/sigs.3828824
    By:
    • Breider, Sven;
    • Teshima, Hazuki;
    • Petersen, Jörn;
    • Chertkov, Olga;
    • Dalingault, Hajnalka;
    • Chen, Amy;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Lapidus, Alla;
    • Goodwin, Lynne;
    • Chain, Patrick;
    • Detter, John;
    • Rohde, Manfred;
    • Tindall, Brian;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Simon, Meinhard;
    • Göker, Markus;
    • Klenk, Hans-Peter;
    • Brinkhoff, Thorsten
    Publication type:
    Article
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    Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1076, doi. 10.4056/sigs.5138968
    By:
    • Göker, Markus;
    • Lu, Megan;
    • Fiebig, Anne;
    • Nolan, Matt;
    • Lapidus, Alla;
    • Tice, Hope;
    • Glavina Del Rio, Tijana;
    • Cheng, Jan-Fang;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Mavromatis, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Pati, Amrita;
    • Chen, Amy;
    • Palaniappan, Krishna
    Publication type:
    Article
    25

    Genome sequence of the Thermotoga thermarum type strain (LA3) from an African solfataric spring.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1105, doi. 10.4056/sigs.3016383
    By:
    • Göker, Markus;
    • Spring, Stefan;
    • Scheuner, Carmen;
    • Anderson, Iain;
    • Zeytun, Ahmet;
    • Nolan, Matt;
    • Lucas, Susan;
    • Tice, Hope;
    • Glavina Del Rio, Tijana;
    • Cheng, Jan-Fang;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Mavromatis, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Pati, Amrita
    Publication type:
    Article
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    Genome sequence of Phaeobacter inhibens type strain (T5), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens.

    Published in:
    Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 334, doi. 10.4056/sigs.4448212
    By:
    • Dogs, Marco;
    • Voget, Sonja;
    • Teshima, Hazuki;
    • Petersen, Jörn;
    • Davenport, Karen;
    • Dalingault, Hajnalka;
    • Chen, Amy;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Goodwin, Lynne;
    • Chain, Patrick;
    • Detter, John;
    • Standfest, Sonja;
    • Rohde, Manfred;
    • Gronow, Sabine;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Simon, Meinhard;
    • Klenk, Hans-Peter;
    • Göker, Markus
    Publication type:
    Article
    28

    Genome sequence of the chemoheterotrophic soil bacterium Saccharomonospora cyanea type strain (NA-134).

    Published in:
    Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 28, doi. 10.4056/sigs.4207886
    By:
    • Meier-Kolthoff, Jan;
    • Lu, Megan;
    • Huntemann, Marcel;
    • Lucas, Susan;
    • Lapidus, Alla;
    • Copeland, Alex;
    • Pitluck, Sam;
    • Goodwin, Lynne;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Pötter, Gabriele;
    • Land, Miriam;
    • Ivanova, Natalia;
    • Rohde, Manfred;
    • Göker, Markus;
    • Detter, John;
    • Woyke, Tanja;
    • Kyrpides, Nikos;
    • Klenk, Hans-Peter
    Publication type:
    Article
    29

    Complete genome sequence of the marine methyl-halide oxidizing Leisingera methylohalidivorans type strain (DSM 14336), a representative of the Roseobacter clade.

    Published in:
    Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 128, doi. 10.4056/sigs.4297965
    By:
    • Buddruhs, Nora;
    • Chertkov, Olga;
    • Petersen, Jörn;
    • Fiebig, Anne;
    • Chen, Amy;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Lapidus, Alla;
    • Goodwin, Lynne;
    • Chain, Patrick;
    • Detter, John;
    • Gronow, Sabine;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Göker, Markus;
    • Brinkhoff, Thorsten;
    • Klenk, Hans-Peter
    Publication type:
    Article
    30

    Genome sequence of Phaeobacter daeponensis type strain (DSM 23529), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis.

    Published in:
    Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 142, doi. 10.4056/sigs.4287962
    By:
    • Dogs, Marco;
    • Teshima, Hazuki;
    • Petersen, Jörn;
    • Fiebig, Anne;
    • Chertkov, Olga;
    • Dalingault, Hajnalka;
    • Chen, Amy;
    • Pati, Amrita;
    • Goodwin, Lynne;
    • Chain, Patrick;
    • Detter, John;
    • Ivanova, Natalia;
    • Lapidus, Alla;
    • Rohde, Manfred;
    • Gronow, Sabine;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Simon, Meinhard;
    • Göker, Markus;
    • Klenk, Hans-Peter
    Publication type:
    Article
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    Genome sequence of Phaeobacter caeruleus type strain (DSM 24564), a surface-associated member of the marine Roseobacter clade.

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 3, p. 403, doi. 10.4056/sigs.3927626
    By:
    • Beyersmann, Paul;
    • Chertkov, Olga;
    • Petersen, Jörn;
    • Fiebig, Anne;
    • Chen, Amy;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Lapidus, Alla;
    • Goodwin, Lynne;
    • Chain, Patrick;
    • Detter, John;
    • Rohde, Manfred;
    • Gronow, Sabine;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Simon, Meinhard;
    • Göker, Markus;
    • Klenk, Hans-Peter;
    • Brinkhoff, Thorsten
    Publication type:
    Article
    33

    Genome sequence of the phage-gene rich marine Phaeobacter arcticus type strain DSM 23566.

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 3, p. 450, doi. 10.4056/sigs.383362
    By:
    • Freese, Heike;
    • Dalingault, Hajnalka;
    • Petersen, Jörn;
    • Pradella, Silke;
    • Davenport, Karen;
    • Teshima, Hazuki;
    • Chen, Amy;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Goodwin, Lynne;
    • Chain, Patrick;
    • Detter, John;
    • Rohde, Manfred;
    • Gronow, Sabine;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Brinkhoff, Thorsten;
    • Göker, Markus;
    • Overmann, Jörg;
    • Klenk, Hans-Peter
    Publication type:
    Article
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    Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 88, doi. 10.4056/sigs.3096473
    By:
    • Abt, Birte;
    • Göker, Markus;
    • Scheuner, Carmen;
    • Han, Cliff;
    • Lu, Megan;
    • Misra, Monica;
    • Lapidus, Alla;
    • Nolan, Matt;
    • Lucas, Susan;
    • Hammon, Nancy;
    • Deshpande, Shweta;
    • Cheng, Jan-Fang;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mavromatis, Konstantinos;
    • Mikhailova, Natalia
    Publication type:
    Article
    37

    Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DL<sup>T</sup>).

    Published in:
    Standards in Genomic Sciences, 2012, v. 7, n. 2, p. 304, doi. 10.4056/sigs.3226659
    By:
    • Spring, Stefan;
    • Visser, Michael;
    • Lu, Megan;
    • Copeland, Alex;
    • Lapidus, Alla;
    • Lucas, Susan;
    • Jan-Fang Cheng;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Goodwin, Lynne A.;
    • Pitluck, Sam;
    • Ivanova, Natalia;
    • Land, Miriam;
    • Hauser, Loren;
    • Larimer, Frank;
    • Rohde, Manfred;
    • Göker, Markus;
    • Detter, John C.;
    • Kyrpides, Nikos C.;
    • Woyke, Tanja
    Publication type:
    Article
    38

    The Evolution of Ecological Diversity in Acidobacteria.

    Published in:
    Frontiers in Microbiology, 2022, v. 12, p. 1, doi. 10.3389/fmicb.2022.715637
    By:
    • Sikorski, Johannes;
    • Baumgartner, Vanessa;
    • Birkhofer, Klaus;
    • Boeddinghaus, Runa S.;
    • Bunk, Boyke;
    • Fischer, Markus;
    • Fösel, Bärbel U.;
    • Friedrich, Michael W.;
    • Göker, Markus;
    • Hölzel, Norbert;
    • Huang, Sixing;
    • Huber, Katharina J.;
    • Kandeler, Ellen;
    • Klaus, Valentin H.;
    • Kleinebecker, Till;
    • Marhan, Sven;
    • von Mering, Christian;
    • Oelmann, Yvonne;
    • Prati, Daniel;
    • Regan, Kathleen M.
    Publication type:
    Article
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    Toward a Novel Multilocus Phylogenetic Taxonomy for the Dermatophytes.

    Published in:
    Mycopathologia, 2017, v. 182, n. 1/2, p. 5, doi. 10.1007/s11046-016-0073-9
    By:
    • Hoog, G.;
    • Dukik, Karolina;
    • Monod, Michel;
    • Packeu, Ann;
    • Stubbe, Dirk;
    • Hendrickx, Marijke;
    • Kupsch, Christiane;
    • Stielow, J.;
    • Freeke, Joanna;
    • Göker, Markus;
    • Rezaei-Matehkolaei, Ali;
    • Mirhendi, Hossein;
    • Gräser, Yvonne
    Publication type:
    Article
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    Large-Scale Co-Phylogenetic Analysis on the Grid.

    Published in:
    International Journal of Grid & High Performance Computing, 2009, v. 1, n. 1, p. 39, doi. 10.4018/jghpc.2009010104
    By:
    • Stockinger, Heinz;
    • Auch, Alexander F.;
    • Göker, Markus;
    • Meier-Kolthoff, Jan;
    • Stamatakis, Alexandros
    Publication type:
    Article
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