Works matching AU Göker, Markus

Results: 104
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    CopyCat : cophylogenetic analysis tool.

    Published in:
    Bioinformatics, 2007, v. 23, n. 7, p. 898, doi. 10.1093/bioinformatics/btm027
    By:
    • Jan P. Meier-Kolthoff;
    • Alexander F. Auch;
    • Daniel H. Huson;
    • Markus Göker
    Publication type:
    Article
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    The Evolution of Ecological Diversity in Acidobacteria.

    Published in:
    Frontiers in Microbiology, 2022, v. 12, p. 1, doi. 10.3389/fmicb.2022.715637
    By:
    • Sikorski, Johannes;
    • Baumgartner, Vanessa;
    • Birkhofer, Klaus;
    • Boeddinghaus, Runa S.;
    • Bunk, Boyke;
    • Fischer, Markus;
    • Fösel, Bärbel U.;
    • Friedrich, Michael W.;
    • Göker, Markus;
    • Hölzel, Norbert;
    • Huang, Sixing;
    • Huber, Katharina J.;
    • Kandeler, Ellen;
    • Klaus, Valentin H.;
    • Kleinebecker, Till;
    • Marhan, Sven;
    • von Mering, Christian;
    • Oelmann, Yvonne;
    • Prati, Daniel;
    • Regan, Kathleen M.
    Publication type:
    Article
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    Codivergence of Mycoviruses with Their Hosts.

    Published in:
    PLoS ONE, 2011, v. 6, n. 7, p. 1, doi. 10.1371/journal.pone.0022252
    By:
    • Göker, Markus;
    • Scheuner, Carmen;
    • Klenk, Hans-Peter;
    • Stielow, J. Benjamin;
    • Menzel, Wulf
    Publication type:
    Article
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    High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482<sup>T</sup>, isolated from raw cow milk.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0242-6
    By:
    • Laviad-Shitrit, Sivan;
    • Göker, Markus;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Stamatis, Dimitrios;
    • Reddy, T. B. K.;
    • Daum, Chris;
    • Shapiro, Nicole;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Halpern, Malka
    Publication type:
    Article
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    Complete genome sequence of Jiangella gansuensis strain YIM 002<sup>T</sup> (DSM 44835<sup>T</sup>), the type species of the genus Jiangella and source of new antibiotic compounds.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0226-6
    By:
    • Jian-Yu Jiao;
    • Carro, Lorena;
    • Lan Liu;
    • Xiao-Yang Gao;
    • Xiao-Tong Zhang;
    • Hozzein, Wael N.;
    • Lapidus, Alla;
    • Huntemann, Marcel;
    • Reddy, T. B. K.;
    • Varghese, Neha;
    • Hadjithomas, Michalis;
    • Ivanova, Natalia N.;
    • Göker, Markus;
    • Pillay, Manoj;
    • Eisen, Jonathan A.;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Wen-Jun Li
    Publication type:
    Article
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    Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050<sup>T</sup> (DSM 19838<sup>T</sup>) and Gramella portivictoriae UST040801-001<sup>T</sup> (DSM 23547<sup>T</sup>), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0163-9
    By:
    • Panschin, Irina;
    • Sixing Huang;
    • Meier-Kolthoff, Jan P.;
    • Tindall, Brian J.;
    • Rohde, Manfred;
    • Verbarg, Susanne;
    • Lapidus, Alla;
    • Han, James;
    • Trong, Stephan;
    • Haynes, Matthew;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Mavromatis, Konstantinos;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Göker, Markus;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.
    Publication type:
    Article
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    High quality draft genome sequences of Pseudomonas fulva DSM 17717<sup>T</sup>, Pseudomonas parafulva DSM 17004<sup>T</sup> and Pseudomonas cremoricolorata DSM 17059<sup>T</sup> type strains.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0178-2
    By:
    • Peña, Arantxa;
    • Busquets, Antonio;
    • Gomila, Margarita;
    • Mulet, Magdalena;
    • Gomila, Rosa M.;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Markowitz, Victor;
    • García-Valdés, Elena;
    • Göker, Markus;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos;
    • Lalucat, Jorge
    Publication type:
    Article
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    High-quality draft genome sequence of Flavobacterium suncheonense GH29-5<sup>T</sup> (DSM 17707<sup>T</sup>) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5<sup>T</sup>.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0159-5
    By:
    • Tashkandy, Nisreen;
    • Sabban, Sari;
    • Fakieh, Mohammad;
    • Meier-Kolthoff, Jan P.;
    • Sixing Huang;
    • Tindall, Brian J.;
    • Rohde, Manfred;
    • Baeshen, Mohammed N.;
    • Baeshen, Nabih A.;
    • Lapidus, Alla;
    • Copeland, Alex;
    • Pillay, Manoj;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Göker, Markus;
    • Klenk, Hans-Peter
    Publication type:
    Article
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    Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477<sup>T</sup>).

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0162-x
    By:
    • Kappler, Ulrike;
    • Davenport, Karen;
    • Beatson, Scott;
    • Lapidus, Alla;
    • Pan, Chongle;
    • Han, Cliff;
    • del Carmen Montero-Calasanz, Maria;
    • Land, Miriam;
    • Hauser, Loren;
    • Rohde, Manfred;
    • Göker, Markus;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.
    Publication type:
    Article
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    High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1<sup>T</sup> (DSM 17521<sup>T</sup>) isolated from muddy waters of a drainage system in Chandigarh, India.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-8
    By:
    • Mukherjee, Supratim;
    • Lapidus, Alla;
    • Shapiro, Nicole;
    • Jan-Fang Cheng;
    • Han, James;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Amy Chen;
    • Palaniappan, Krishna;
    • Spring, Stefan;
    • Göker, Markus;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Tindall, Brian J.;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Pati, Amrita
    Publication type:
    Article
    29

    Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252 isolated from marine sediment.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 687, doi. 10.4056/sigs.3828824
    By:
    • Breider, Sven;
    • Teshima, Hazuki;
    • Petersen, Jörn;
    • Chertkov, Olga;
    • Dalingault, Hajnalka;
    • Chen, Amy;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Lapidus, Alla;
    • Goodwin, Lynne;
    • Chain, Patrick;
    • Detter, John;
    • Rohde, Manfred;
    • Tindall, Brian;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Simon, Meinhard;
    • Göker, Markus;
    • Klenk, Hans-Peter;
    • Brinkhoff, Thorsten
    Publication type:
    Article
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    Genome sequence of the mud-dwelling archaeon Methanoplanus limicola type strain (DSM 2279), reclassification of Methanoplanus petrolearius as Methanolacinia petrolearia and emended descriptions of the genera Methanoplanus and Methanolacinia.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1076, doi. 10.4056/sigs.5138968
    By:
    • Göker, Markus;
    • Lu, Megan;
    • Fiebig, Anne;
    • Nolan, Matt;
    • Lapidus, Alla;
    • Tice, Hope;
    • Glavina Del Rio, Tijana;
    • Cheng, Jan-Fang;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Mavromatis, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Pati, Amrita;
    • Chen, Amy;
    • Palaniappan, Krishna
    Publication type:
    Article
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    Genome sequence of the Thermotoga thermarum type strain (LA3) from an African solfataric spring.

    Published in:
    Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1105, doi. 10.4056/sigs.3016383
    By:
    • Göker, Markus;
    • Spring, Stefan;
    • Scheuner, Carmen;
    • Anderson, Iain;
    • Zeytun, Ahmet;
    • Nolan, Matt;
    • Lucas, Susan;
    • Tice, Hope;
    • Glavina Del Rio, Tijana;
    • Cheng, Jan-Fang;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Mavromatis, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Pati, Amrita
    Publication type:
    Article
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    Genome sequence of Phaeobacter inhibens type strain (T5), a secondary metabolite producing representative of the marine Roseobacter clade, and emendation of the species description of Phaeobacter inhibens.

    Published in:
    Standards in Genomic Sciences, 2013, v. 9, n. 2, p. 334, doi. 10.4056/sigs.4448212
    By:
    • Dogs, Marco;
    • Voget, Sonja;
    • Teshima, Hazuki;
    • Petersen, Jörn;
    • Davenport, Karen;
    • Dalingault, Hajnalka;
    • Chen, Amy;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Goodwin, Lynne;
    • Chain, Patrick;
    • Detter, John;
    • Standfest, Sonja;
    • Rohde, Manfred;
    • Gronow, Sabine;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Simon, Meinhard;
    • Klenk, Hans-Peter;
    • Göker, Markus
    Publication type:
    Article
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    Genome sequence of Phaeobacter daeponensis type strain (DSM 23529), a facultatively anaerobic bacterium isolated from marine sediment, and emendation of Phaeobacter daeponensis.

    Published in:
    Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 142, doi. 10.4056/sigs.4287962
    By:
    • Dogs, Marco;
    • Teshima, Hazuki;
    • Petersen, Jörn;
    • Fiebig, Anne;
    • Chertkov, Olga;
    • Dalingault, Hajnalka;
    • Chen, Amy;
    • Pati, Amrita;
    • Goodwin, Lynne;
    • Chain, Patrick;
    • Detter, John;
    • Ivanova, Natalia;
    • Lapidus, Alla;
    • Rohde, Manfred;
    • Gronow, Sabine;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Simon, Meinhard;
    • Göker, Markus;
    • Klenk, Hans-Peter
    Publication type:
    Article
    40

    Genome sequence of the chemoheterotrophic soil bacterium Saccharomonospora cyanea type strain (NA-134).

    Published in:
    Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 28, doi. 10.4056/sigs.4207886
    By:
    • Meier-Kolthoff, Jan;
    • Lu, Megan;
    • Huntemann, Marcel;
    • Lucas, Susan;
    • Lapidus, Alla;
    • Copeland, Alex;
    • Pitluck, Sam;
    • Goodwin, Lynne;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Pötter, Gabriele;
    • Land, Miriam;
    • Ivanova, Natalia;
    • Rohde, Manfred;
    • Göker, Markus;
    • Detter, John;
    • Woyke, Tanja;
    • Kyrpides, Nikos;
    • Klenk, Hans-Peter
    Publication type:
    Article
    41

    Genome sequence of Phaeobacter caeruleus type strain (DSM 24564), a surface-associated member of the marine Roseobacter clade.

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 3, p. 403, doi. 10.4056/sigs.3927626
    By:
    • Beyersmann, Paul;
    • Chertkov, Olga;
    • Petersen, Jörn;
    • Fiebig, Anne;
    • Chen, Amy;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Lapidus, Alla;
    • Goodwin, Lynne;
    • Chain, Patrick;
    • Detter, John;
    • Rohde, Manfred;
    • Gronow, Sabine;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Simon, Meinhard;
    • Göker, Markus;
    • Klenk, Hans-Peter;
    • Brinkhoff, Thorsten
    Publication type:
    Article
    42

    Complete genome sequence of the marine methyl-halide oxidizing Leisingera methylohalidivorans type strain (DSM 14336), a representative of the Roseobacter clade.

    Published in:
    Standards in Genomic Sciences, 2013, v. 9, n. 1, p. 128, doi. 10.4056/sigs.4297965
    By:
    • Buddruhs, Nora;
    • Chertkov, Olga;
    • Petersen, Jörn;
    • Fiebig, Anne;
    • Chen, Amy;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Lapidus, Alla;
    • Goodwin, Lynne;
    • Chain, Patrick;
    • Detter, John;
    • Gronow, Sabine;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Göker, Markus;
    • Brinkhoff, Thorsten;
    • Klenk, Hans-Peter
    Publication type:
    Article
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    Genome sequence of the phage-gene rich marine Phaeobacter arcticus type strain DSM 23566.

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 3, p. 450, doi. 10.4056/sigs.383362
    By:
    • Freese, Heike;
    • Dalingault, Hajnalka;
    • Petersen, Jörn;
    • Pradella, Silke;
    • Davenport, Karen;
    • Teshima, Hazuki;
    • Chen, Amy;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Goodwin, Lynne;
    • Chain, Patrick;
    • Detter, John;
    • Rohde, Manfred;
    • Gronow, Sabine;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Brinkhoff, Thorsten;
    • Göker, Markus;
    • Overmann, Jörg;
    • Klenk, Hans-Peter
    Publication type:
    Article
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    Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov., Treponema stenostrepta comb. nov., and Treponema zuelzerae comb. nov., and emendation of the genus Treponema

    Published in:
    Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 88, doi. 10.4056/sigs.3096473
    By:
    • Abt, Birte;
    • Göker, Markus;
    • Scheuner, Carmen;
    • Han, Cliff;
    • Lu, Megan;
    • Misra, Monica;
    • Lapidus, Alla;
    • Nolan, Matt;
    • Lucas, Susan;
    • Hammon, Nancy;
    • Deshpande, Shweta;
    • Cheng, Jan-Fang;
    • Tapia, Roxanne;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Liolios, Konstantinos;
    • Pagani, Ioanna;
    • Ivanova, Natalia;
    • Mavromatis, Konstantinos;
    • Mikhailova, Natalia
    Publication type:
    Article
    47

    Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DL<sup>T</sup>).

    Published in:
    Standards in Genomic Sciences, 2012, v. 7, n. 2, p. 304, doi. 10.4056/sigs.3226659
    By:
    • Spring, Stefan;
    • Visser, Michael;
    • Lu, Megan;
    • Copeland, Alex;
    • Lapidus, Alla;
    • Lucas, Susan;
    • Jan-Fang Cheng;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Goodwin, Lynne A.;
    • Pitluck, Sam;
    • Ivanova, Natalia;
    • Land, Miriam;
    • Hauser, Loren;
    • Larimer, Frank;
    • Rohde, Manfred;
    • Göker, Markus;
    • Detter, John C.;
    • Kyrpides, Nikos C.;
    • Woyke, Tanja
    Publication type:
    Article
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    Pathways and substrate-specific regulation of amino acid degradation in Phaeobacter inhibens DSM 17395 (archetype of the marine Roseobacter clade).

    Published in:
    Environmental Microbiology, 2014, v. 16, n. 1, p. 218, doi. 10.1111/1462-2920.12276
    By:
    • Drüppel, Katharina;
    • Hensler, Michael;
    • Trautwein, Kathleen;
    • Koßmehl, Sebastian;
    • Wöhlbrand, Lars;
    • Schmidt ‐ Hohagen, Kerstin;
    • Ulbrich, Marcus;
    • Bergen, Nils;
    • Meier ‐ Kolthoff, Jan P.;
    • Göker, Markus;
    • Klenk, Hans ‐ Peter;
    • Schomburg, Dietmar;
    • Rabus, Ralf
    Publication type:
    Article
    50

    Ongoing diversification of the global fish pathogen Piscirickettsia salmonis through genetic isolation and transposition bursts.

    Published in:
    ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2023, v. 17, n. 12, p. 2247, doi. 10.1038/s41396-023-01531-9
    By:
    • Schober, Isabel;
    • Bunk, Boyke;
    • Carril, Gabriela;
    • Freese, Heike M.;
    • Ojeda, Nicolás;
    • Riedel, Thomas;
    • Meier-Kolthoff, Jan P.;
    • Göker, Markus;
    • Spröer, Cathrin;
    • Flores-Herrera, Patricio A.;
    • Nourdin-Galindo, Guillermo;
    • Gómez, Fernando;
    • Cárdenas, Constanza;
    • Vásquez-Ponce, Felipe;
    • Labra, Alvaro;
    • Figueroa, Jaime;
    • Olivares-Pacheco, Jorge;
    • Nübel, Ulrich;
    • Sikorski, Johannes;
    • Marshall, Sergio H.
    Publication type:
    Article