Works by Fujita, André

Results: 52

Food Aversion, Systemic Inflammation and Intramuscular Adipose Tissue are Mortality Predictors in Advanced Lung Cancer Patients.

Published in:

JCSM Rapid Communications, 2024, v. 7, n. 2, p. 157, doi. 10.1002/rco2.106

By:

das Neves, Willian;
Borges, Ana Paula de Souza;
Carvalho, Vinicius Jardim;
Fujita, André;
de Castro, Gilberto

Publication type:

Article

Efficient Laplacian spectral density computations for networks with arbitrary degree distributions.

Published in:

Network Science, 2021, v. 9, n. 3, p. 312, doi. 10.1017/nws.2021.10

By:

Guzman, Grover E. C.;
Stadler, Peter F.;
Fujita, André

Publication type:

Article

Fluorescence-based method is more accurate than counting-based methods for plotting growth curves of adherent cells.

Published in:

BMC Research Notes, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s13104-020-4914-8

By:

Pereira, Túlio Felipe;
Levin, Gabriel;
DeOcesano-Pereira, Carlos;
Caodaglio, Amanda Schiersner;
Fujita, André;
Tonso, Aldo;
Sogayar, Mari Cleide

Publication type:

Article

Gene expression and promoter methylation of angiogenic and lymphangiogenic factors as prognostic markers in melanoma.

Published in:

Molecular Oncology, 2019, v. 13, n. 6, p. 1433, doi. 10.1002/1878-0261.12501

By:

Monteiro, Ana Carolina;
Muenzner, Julienne K.;
Andrade, Fernando;
Rius, Flávia Eichemberger;
Ostalecki, Christian;
Geppert, Carol I.;
Agaimy, Abbas;
Hartmann, Arndt;
Fujita, André;
Schneider‐Stock, Regine;
Jasiulionis, Miriam Galvonas

Publication type:

Article

Potential Confounders in the Analysis of Brazilian Adolescent's Health: A Combination of Machine Learning and Graph Theory.

Published in:

International Journal of Environmental Research & Public Health, 2020, v. 17, n. 1, p. 90, doi. 10.3390/ijerph17010090

By:

Ambriola Oku, Amanda Yumi;
Zimeo Morais, Guilherme Augusto;
Arantes Bueno, Ana Paula;
Fujita, André;
Sato, João Ricardo

Publication type:

Article

Lead contamination in human milk affects infants' language trajectory: results from a prospective cohort study.

Published in:

Frontiers in Public Health, 2024, p. 1, doi. 10.3389/fpubh.2024.1450570

By:

Naspolini, Nathalia Ferrazzo;
Vanzele, Pedro A. R.;
Tótolo, Pedro;
Schüroff, Paulo Alfonso;
Fatori, Daniel;
Neto, Santos Alves Vicentini;
Barata-Silva, Cristiane;
Santos, Lisia Maria Gobbo dos;
Fujita, André;
Passos-Bueno, Maria Rita;
Beltrão-Braga, Patricia C. B.;
Campos, Alline C.;
Carvalho, André C. P. L. F.;
Polanczyk, Guilherme V.;
Moreira, Josino Costa;
Taddei, Carla R.

Publication type:

Article

Noninvasive prenatal paternity determination using microhaplotypes: a pilot study.

Published in:

BMC Medical Genomics, 2020, v. 13, n. 1, p. N.PAG, doi. 10.1186/s12920-020-00806-w

By:

Wang, Jaqueline Yu Ting;
Whittle, Martin R.;
Puga, Renato David;
Yambartsev, Anatoly;
Fujita, André;
Nakaya, Helder I.

Publication type:

Article

Abnormal Cortico-Cerebellar Functional Connectivity in Autism Spectrum Disorder.

Published in:

Frontiers in Systems Neuroscience, 2019, p. N.PAG, doi. 10.3389/fnsys.2018.00074

By:

Ramos, Taiane Coelho;
Balardin, Joana Bisol;
Sato, João Ricardo;
Fujita, André

Publication type:

Article

Virulence genes of Rickettsia rickettsii are differentially modulated by either temperature upshift or blood-feeding in tick midgut and salivary glands.

Published in:

Parasites & Vectors, 2016, v. 9, p. 1, doi. 10.1186/s13071-016-1581-7

By:

Galletti, Maria Fernanda B. M.;
Fujita, André;
Rosa, Rafael D.;
Martins, Larissa A.;
Soares, Herbert S.;
Labruna, Marcelo B.;
Daffre, Sirlei;
Fogaça, Andréa C.

Publication type:

Article

A comparative study of statistical methods used to identify dependencies between gene expression signals.

Published in:

Briefings in Bioinformatics, 2014, v. 15, n. 6, p. 906, doi. 10.1093/bib/bbt051

By:

de Siqueira Santos, Suzana;
Takahashi, Daniel Yasumasa;
Nakata, Asuka;
Fujita, André

Publication type:

Article

Intraparticle Connectivity in Sugarcane Bagasse Unveiled by Pore Network Modeling.

Published in:

BioEnergy Research, 2019, v. 12, n. 3, p. 546, doi. 10.1007/s12155-019-09993-6

By:

Yancy-Caballero, Daison;
Ling, Liu Y.;
Fujita, André;
Ferreira, João E.;
Driemeier, Carlos

Publication type:

Article

A hemolytic-uremic syndrome-associated strain O113:H21 Shiga toxin-producing Escherichia coli specifically expresses a transcriptional module containing dicA and is related to gene network dysregulation in Caco-2 cells.

Published in:

PLoS ONE, 2017, v. 12, n. 12, p. 1, doi. 10.1371/journal.pone.0189613

By:

Bando, Silvia Yumi;
Iamashita, Priscila;
Guth, Beatriz E.;
dos Santos, Luis F.;
Fujita, André;
Abe, Cecilia M.;
Ferreira, Leandro R.;
Moreira-Filho, Carlos Alberto

Publication type:

Article

Evaluation of pattern recognition and feature extraction methods in ADHD prediction.

Published in:

Frontiers in Systems Neuroscience, 2012, v. 6, p. 1, doi. 10.3389/fnsys.2012.00068

By:

Sato, João Ricardo;
Hoexter, Marcelo Queiroz;
Fujita, André;
Rohde, Luis Augusto

Publication type:

Article

XiP: a computational environment to create, extend and share workflows.

Published in:

Bioinformatics, 2013, v. 29, n. 1, p. 137, doi. 10.1093/bioinformatics/bts630

By:

Nagasaki, Masao;
Fujita, André;
Sekiya, Yayoi;
Saito, Ayumu;
Ikeda, Emi;
Li, Chen;
Miyano, Satoru

Publication type:

Article

Systems biology model repository for macrophage pathway simulation.

Published in:

Bioinformatics, 2011, v. 27, n. 11, p. 1591, doi. 10.1093/bioinformatics/btr173

By:

Nagasaki, Masao;
Saito, Ayumu;
Fujita, André;
Tremmel, Georg;
Ueno, Kazuko;
Ikeda, Emi;
Jeong, Euna;
Miyano, Satoru

Publication type:

Article

Model-free unsupervised gene set screening based on information enrichment in expression profiles.

Published in:

Bioinformatics, 2010, v. 26, n. 24, p. 3090, doi. 10.1093/bioinformatics/btq592

By:

Niida, Atushi;
Imoto, Seiya;
Yamaguchi, Rui;
Nagasaki, Masao;
Fujita, André;
Shimamura, Teppei;
Miyano, Satoru

Publication type:

Article

A fast and robust statistical test based on likelihood ratio with Bartlett correction to identify Granger causality between gene sets.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. 2349, doi. 10.1093/bioinformatics/btq427

By:

Fujita, André;
Kojima, Kaname;
Patriota, Alexandre G.;
Sato, João R.;
Severino, Patricia;
Miyano, Satoru

Publication type:

Article

CHD7 promotes glioblastoma cell motility and invasiveness through transcriptional modulation of an invasion signature.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-39564-w

By:

Machado, Raquel A. C.;
Schneider, Hannah;
DeOcesano-Pereira, Carlos;
Lichtenstein, Flavio;
Andrade, Fernando;
Fujita, André;
Trombetta-Lima, Marina;
Weller, Michael;
Bowman-Colin, Christian;
Sogayar, Mari Cleide

Publication type:

Article

DWT–CEM: an algorithm for scale-temporal clustering in fMRI.

Published in:

Biological Cybernetics, 2007, v. 97, n. 1, p. 33, doi. 10.1007/s00422-007-0154-4

By:

Sato, João Ricardo;
Fujita, André;
Amaro Jr., Edson;
Miranda, Janaina;
Morettin, Pedro;
Brammer, Michal John

Publication type:

Article

An fMRI normative database for connectivity networks using one-class support vector machines.

Published in:

Human Brain Mapping, 2009, v. 30, n. 4, p. 1068, doi. 10.1002/hbm.20569

By:

Sato, João Ricardo;
da Graça Morais Martin, Maria;
Fujita, André;
Mourão-Miranda, Janaina;
Brammer, Michael John;
Amaro, Edson

Publication type:

Article

A Statistical Method to Distinguish Functional Brain Networks.

Published in:

Frontiers in Neuroscience, 2017, v. 11, p. 1, doi. 10.3389/fnins.2017.00066

By:

Fujita, André;
Vidal, Maciel C.;
Takahashi, Daniel Y.

Publication type:

Article

ANOCVA in R: A Software to Compare Clusters between Groups and Its Application to the Study of Autism Spectrum Disorder.

Published in:

Frontiers in Neuroscience, 2017, v. 11, p. 1, doi. 10.3389/fnins.2017.00016

By:

Vidal, Maciel C.;
Sato, João R.;
Balardin, Joana B.;
Takahashi, Daniel Y.;
Fujita, André

Publication type:

Article

Functional clustering of time series gene expression data by Granger causality.

Published in:

BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-137

By:

Fujita, André;
Severino, Patricia;
Kojima, Kaname;
Sato, João Ricardo;
Patriota, Alexandre Galvão;
Miyano, Satoru

Publication type:

Article

Recursive regularization for inferring gene networks from time-course gene expression profiles.

Published in:

BMC Systems Biology, 2009, v. 3, p. 1, doi. 10.1186/1752-0509-3-41

By:

Shimamura, Teppei;
Imoto, Seiya;
Yamaguchi, Rui;
Fujita, André;
Nagasaki, Masao;
Miyano, Satoru

Publication type:

Article

A non-parametric statistical test to compare clusters with applications in functional magnetic resonance imaging data.

Published in:

Statistics in Medicine, 2014, v. 33, n. 28, p. 4949, doi. 10.1002/sim.6292

By:

Fujita, André;
Takahashi, Daniel Y.;
Patriota, Alexandre G.;
Sato, João R.

Publication type:

Article

Identifying regulational alterations in gene regulatory networks by state space representation of vector autoregressive models and variational annealing.

Published in:

BMC Genomics, 2012, v. 13, n. Suppl 1, p. 1, doi. 10.1186/1471-2164-13-S1-S6

By:

Kojima, Kaname;
Imoto, Seiya;
Yamaguchi, Rui;
Fujita, André;
Yamauchi, Mai;
Gotoh, Noriko;
Miyano, Satoru

Publication type:

Article

Predicting survival in metastatic non‐small cell lung cancer patients with poor ECOG‐PS: A single‐arm prospective study.

Published in:

Cancer Medicine, 2023, v. 12, n. 4, p. 5099, doi. 10.1002/cam4.5254

By:

Cunha, Mateus Trinconi;
de Souza Borges, Ana Paula;
Carvalho Jardim, Vinicius;
Fujita, André;
de Castro, Gilberto

Publication type:

Article

Genome-wide promoter methylation profiling in a cellular model of melanoma progression reveals markers of malignancy and metastasis that predict melanoma survival.

Published in:

Clinical Epigenetics, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13148-022-01291-x

By:

Rius, Flávia E.;
Papaiz, Debora D.;
Azevedo, Hatylas F. Z.;
Ayub, Ana Luísa P.;
Pessoa, Diogo O.;
Oliveira, Tiago F.;
Loureiro, Ana Paula M.;
Andrade, Fernando;
Fujita, André;
Reis, Eduardo M.;
Mason, Christopher E.;
Jasiulionis, Miriam G.

Publication type:

Article

High CD90 (THY-1) expression positively correlates with cell transformation and worse prognosis in basal-like breast cancer tumors.

Published in:

PLoS ONE, 2018, v. 13, n. 6, p. 1, doi. 10.1371/journal.pone.0199254

By:

Lobba, Aline Ramos Maia;
Carreira, Ana Claudia Oliveira;
Cerqueira, Otto Luiz Dutra;
Fujita, André;
DeOcesano-Pereira, Carlos;
Osorio, Cynthia Aparecida Bueno;
Soares, Fernando Augusto;
Rameshwar, Pranela;
Sogayar, Mari Cleide

Publication type:

Article

Granger Causality among Graphs and Application to Functional Brain Connectivity in Autism Spectrum Disorder.

Published in:

Entropy, 2021, v. 23, n. 9, p. 1204, doi. 10.3390/e23091204

By:

Ribeiro, Adèle Helena;
Vidal, Maciel Calebe;
Sato, João Ricardo;
Fujita, André

Publication type:

Article

GEDI: a user-friendly toolbox for analysis of large-scale geneexpression data.

Published in:

BMC Bioinformatics, 2007, v. 8, p. 457, doi. 10.1186/1471-2105-8-457

By:

Fujita, André;
Sato, João R.;
Ferreira, Carlos E.;
Sogayar, Mari C.

Publication type:

Article

IDENTIFICATION OF GRANGER CAUSALITY BETWEEN GENE SETS.

Published in:

Journal of Bioinformatics & Computational Biology, 2010, v. 8, n. 4, p. 679, doi. 10.1142/S0219720010004860

By:

FUJITA, ANDRÉ;
SATO, JOÃO RICARDO;
KOJIMA, KANAME;
GOMES, LUCIANA RODRIGUES;
NAGASAKI, MASAO;
SOGAYAR, MARI CLEIDE;
MIYANO, SATORU

Publication type:

Article

COMPARING PEARSON, SPEARMAN AND HOEFFDING'S D MEASURE FOR GENE EXPRESSION ASSOCIATION ANALYSIS.

Published in:

Journal of Bioinformatics & Computational Biology, 2009, v. 7, n. 4, p. 663, doi. 10.1142/S0219720009004230

By:

FUJITA, ANDRÉ;
SATO, JOÃO RICARDO;
DEMASI, MARCOS ANGELO ALMEIDA;
SOGAYAR, MARI CLEIDE;
FERREIRA, CARLOS EDUARDO;
MIYANO, SATORU

Publication type:

Article

MODELING NONLINEAR GENE REGULATORY NETWORKS FROM TIME SERIES GENE EXPRESSION DATA.

Published in:

Journal of Bioinformatics & Computational Biology, 2008, v. 6, n. 5, p. 961, doi. 10.1142/S0219720008003746

By:

FUJITA, ANDRÉ;
SATO, JOÃO RICARDO;
GARAY-MALPARTIDA, HUMBERTO MIGUEL;
SOGAYAR, MARI CLEIDE;
FERREIRA, CARLOS EDUARDO;
MIYANO, SATORU

Publication type:

Article

A fast algorithm to approximate the spectral density of locally tree-like networks with assortativity.

Published in:

Journal of Complex Networks, 2023, v. 11, n. 2, p. 1, doi. 10.1093/comnet/cnad005

By:

Guzman, Grover E C;
Fujita, André

Publication type:

Article

Efficient eigenvalue counts for tree-like networks.

Published in:

Journal of Complex Networks, 2022, v. 10, n. 5, p. 1, doi. 10.1093/comnet/cnac040

By:

Guzman, Grover E C;
Stadler, Peter F;
Fujita, André

Publication type:

Article

fast parameter estimator for large complex networks.

Published in:

Journal of Complex Networks, 2022, v. 10, n. 3, p. 1, doi. 10.1093/comnet/cnac022

By:

Guzman, Grover E C;
Takahashi, Daniel Yasumasa;
Fujita, André

Publication type:

Article

Spectral density of random graphs: convergence properties and application in model fitting.

Published in:

Journal of Complex Networks, 2021, v. 9, n. 6, p. 1, doi. 10.1093/comnet/cnab041

By:

Santos, Suzana de Siqueira;
Fujita, André;
Matias, Catherine

Publication type:

Article

The Transcriptome of the Salivary Glands of Amblyomma aureolatum Reveals the Antimicrobial Peptide Microplusin as an Important Factor for the Tick Protection Against Rickettsia rickettsii Infection.

Published in:

Frontiers in Physiology, 2019, p. N.PAG, doi. 10.3389/fphys.2019.00529

By:

Martins, Larissa A.;
Malossi, Camila D.;
Galletti, Maria F. B. de M.;
Ribeiro, José M.;
Fujita, André;
Esteves, Eliane;
Costa, Francisco B.;
Labruna, Marcelo B.;
Daffre, Sirlei;
Fogaça, Andréa C.

Publication type:

Article

CoGA: An R Package to Identify Differentially Co-Expressed Gene Sets by Analyzing the Graph Spectra.

Published in:

PLoS ONE, 2015, v. 10, n. 8, p. 1, doi. 10.1371/journal.pone.0135831

By:

Santos, Suzana de Siqueira;
Galatro, Thais Fernanda de Almeida;
Watanabe, Rodrigo Akira;
Oba-Shinjo, Sueli Mieko;
Nagahashi Marie, Suely Kazue;
Fujita, André

Publication type:

Article

Transcriptional Network Analysis Reveals that AT1 and AT2 Angiotensin II Receptors Are Both Involved in the Regulation of Genes Essential for Glioma Progression.

Published in:

PLoS ONE, 2014, v. 9, n. 11, p. 1, doi. 10.1371/journal.pone.0110934

By:

Azevedo, Hátylas;
Fujita, André;
Bando, Silvia Yumi;
Iamashita, Priscila;
Moreira-Filho, Carlos Alberto

Publication type:

Article

Evans Blue as a Simple Method to Discriminate Mosquitoes’ Feeding Choice on Small Laboratory Animals.

Published in:

PLoS ONE, 2014, v. 9, n. 10, p. 1, doi. 10.1371/journal.pone.0110551

By:

Maciel, Ceres;
Fujita, André;
Gueroni, Daniele I.;
Ramos, Anderson D.;
Capurro, Margareth L.;
Sá-Nunes, Anderson

Publication type:

Article

Natural Blood Feeding and Temperature Shift Modulate the Global Transcriptional Profile of <i>Rickettsia rickettsii</i> Infecting Its Tick Vector.

Published in:

PLoS ONE, 2013, v. 8, n. 10, p. 1, doi. 10.1371/journal.pone.0077388

By:

Galletti, Maria Fernanda B. M.;
Fujita, André;
Nishiyama Jr, Milton Y.;
Malossi, Camila D.;
Pinter, Adriano;
Soares, João F.;
Daffre, Sirlei;
Labruna, Marcelo B.;
Fogaça, Andréa C.

Publication type:

Article

Discriminating Different Classes of Biological Networks by Analyzing the Graphs Spectra Distribution.

Published in:

PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0049949

By:

Takahashi, Daniel Yasumasa;
Sato, João Ricardo;
Ferreira, Carlos Eduardo;
Fujita, André

Publication type:

Article

The intracellular bacterium Rickettsia rickettsii exerts an inhibitory effect on the apoptosis of tick cells.

Published in:

Parasites & Vectors, 2020, v. 13, n. 1, p. N.PAG, doi. 10.1186/s13071-020-04477-5

By:

Martins, Larissa Almeida;
Palmisano, Giuseppe;
Cortez, Mauro;
Kawahara, Rebeca;
de Freitas Balanco, José Mario;
Fujita, André;
Alonso, Beatriz Iglesias;
Barros-Battesti, Darci Moraes;
Braz, Gloria Regina Cardoso;
Tirloni, Lucas;
Esteves, Eliane;
Daffre, Sirlei;
Fogaça, Andréa Cristina

Publication type:

Article

RECK is not an independent prognostic marker for breast cancer.

Published in:

2015

By:

Gomes, Luciana R.;
Fujita, André;
Mott, Joni D.;
Soares, Fernando A.;
Labriola, Leticia;
Sogayar, Mari C.

Publication type:

journal article

Association Between Short-Term Systolic Blood Pressure Variability and Carotid Intima-Media Thickness in ELSA-Brasil Baseline.

Published in:

American Journal of Hypertension, 2017, v. 30, n. 10, p. 954, doi. 10.1093/ajh/hpx076

By:

Ribeiro, Adèle H.;
Lotufo, Paulo A.;
Fujita, André;
Goulart, Alessandra C.;
Chor, Dora;
Mill, José G.;
Bensenor, Isabela M.;
Santos, Itamar S.

Publication type:

Article

Dynamic Gene Network Analysis of Caco-2 Cell Response to Shiga Toxin-Producing Escherichia coli-Associated Hemolytic–Uremic Syndrome.

Published in:

Microorganisms, 2019, v. 7, n. 7, p. 195, doi. 10.3390/microorganisms7070195

By:

Bando, Silvia Y.;
Iamashita, Priscila;
Silva, Filipi N.;
Costa, Luciano da F.;
Abe, Cecilia M.;
Bertonha, Fernanda B.;
Guth, Beatriz E. C.;
Fujita, André;
Moreira-Filho, Carlos A.

Publication type:

Article

Deletion and low expression of NFKBIA are associated with poor prognosis in lower-grade glioma patients.

Published in:

Scientific Reports, 2016, p. 24160, doi. 10.1038/srep24160

By:

Kinker, Gabriela Sarti;
Thomas, Andrew Maltez;
Carvalho, Vinicius Jardim;
Lima, Felipe Prata;
Fujita, André

Publication type:

Article

Autism Spectrum and gastrointestinal health: Screening on the influence of environmental factors on gastrointestinal problems.

Published in:

Autism Research: Official Journal of the International Society for Autism Research, 2024, v. 17, n. 12, p. 2535, doi. 10.1002/aur.3263

By:

Brito, Anita;
Tocantins, Fernando Ribeiro;
Brentani, Helena;
Fujita, André;
Taddei, Carla Romano;
Beltrão‐Braga, Patricia Cristina Baleeiro

Publication type:

Article