Works by Francisco S. Domingues

Results: 40

Computational assessment of feature combinations for pathogenic variant prediction.

Published in:

Molecular Genetics & Genomic Medicine, 2016, v. 4, n. 4, p. 431, doi. 10.1002/mgg3.214

By:

König, Eva;
Rainer, Johannes;
Domingues, Francisco S.

Publication type:

Article

Automated clustering of ensembles of alternative models in protein structure databases.

Published in:

PEDS: Protein Engineering, Design & Selection, 2004, v. 17, n. 6, p. 537

By:

Francisco S. Domingues;
Thomas Lengauer

Publication type:

Article

Sustained performance of knowledge-based potentials in fold recognition.

Published in:

Proteins, 1999, v. 37, n. S3, p. 112, doi. 10.1002/(SICI)1097-0134(1999)37:3+<112::AID-PROT15>3.0.CO;2-R

By:

Domingues, Francisco S.;
Koppensteiner, Walter A.;
Jaritz, Markus;
Prlic, Andreas;
Weichenberger, Christian;
Wiederstein, Markus;
Floeckner, Hannes;
Lackner, Peter;
Sippl, Manfred J.

Publication type:

Article

An attempt to analyse progress in fold recognition from CASP1 to CASP3.

Published in:

Proteins, 1999, v. 37, n. S3, p. 226, doi. 10.1002/(SICI)1097-0134(1999)37:3+<226::AID-PROT29>3.0.CO;2-Z

By:

Sippl, Manfred J.;
Lackner, Peter;
Domingues, Francisco S.;
Koppensteiner, Walter A.

Publication type:

Article

Automated large scale evaluation of protein structure predictions.

Published in:

Proteins, 1999, v. 37, n. S3, p. 7, doi. 10.1002/(SICI)1097-0134(1999)37:3+<7::AID-PROT3>3.0.CO;2-V

By:

Lackner, Peter;
Koppensteiner, Walter A.;
Domingues, Francisco S.;
Sippl, Manfred J.

Publication type:

Article

Protein folds from pair interactions: A blind test in fold recognition.

Published in:

Proteins, 1997, v. 29, n. S1, p. 129, doi. 10.1002/(SICI)1097-0134(1997)1+<129::AID-PROT17>3.0.CO;2-Q

By:

Flöckner, Hannes;
Domingues, Francisco S.;
Sippl, Manfred J.

Publication type:

Article

Dintor: functional annotation of genomic and proteomic data.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2279-5

By:

Weichenberger, Christian X.;
Blankenburg, Hagen;
Palermo, Antonia;
D'Elia, Yuri;
König, Eva;
Bernstein, Erik;
Domingues, Francisco S.

Publication type:

Article

Local Function Conservation in Sequence and Structure Space.

Published in:

PLoS Computational Biology, 2008, v. 4, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000105

By:

Weinhold, Nils;
Sander, Oliver;
Domingues, Francisco S.;
Lengauer, Thomas;
Sommer, Ingolf

Publication type:

Article

Structural Descriptors of gp120 V3 Loop for the Prediction of HIV-1 Coreceptor Usage.

Published in:

PLoS Computational Biology, 2007, v. 3, n. 3, p. 0555, doi. 10.1371/journal.pcbi.0030058

By:

Sander, Oliver;
Sing, Tobias;
Sommer, Ingolf;
Low, Andrew J.;
Cheung, Peter K.;
Harrigan, P. Richard;
Lengauer, Thomas;
Domingues, Francisco S.

Publication type:

Article

Sequence variants in IL10, ARPC2 and multiple other loci contribute to ulcerative colitis susceptibility.

Published in:

Nature Genetics, 2008, v. 40, n. 11, p. 1319, doi. 10.1038/ng.221

By:

Franke, Andre;
Balschun, Tobias;
Karlsen, Tom H;
Sventoraityte, Jurgita;
Nikolaus, Susanna;
Mayr, Gabriele;
Domingues, Francisco S;
Albrecht, Mario;
Nothnagel, Michael;
Ellinghaus, David;
Sina, Christian;
Onnie, Clive M;
Weersma, Rinse K;
Stokkers, Pieter C F;
Wijmenga, Cisca;
Gazouli, Maria;
Strachan, David;
McArdle, Wendy L;
Vermeire, Séverine;
Rutgeerts, Paul

Publication type:

Article

Intracellular delivery of Parkin-RING0-based fragments corrects Parkin-induced mitochondrial dysfunction through interaction with SLP-2.

Published in:

Journal of Translational Medicine, 2024, v. 22, n. 1, p. 1, doi. 10.1186/s12967-024-04850-3

By:

Zanon, Alessandra;
Guida, Marianna;
Lavdas, Alexandros A.;
Corti, Corrado;
Castelo Rueda, Maria Paulina;
Negro, Alessandro;
Pramstaller, Peter P.;
Domingues, Francisco S.;
Hicks, Andrew A.;
Pichler, Irene

Publication type:

Article

The arrhythmogenic cardiomyopathy-specific coding and non-coding transcriptome in human cardiac stromal cells.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-4876-6

By:

Rainer, Johannes;
Meraviglia, Viviana;
Blankenburg, Hagen;
Piubelli, Chiara;
Pramstaller, Peter P.;
Paolin, Adolfo;
Cogliati, Elisa;
Pompilio, Giulio;
Sommariva, Elena;
Domingues, Francisco S.;
Rossini, Alessandra

Publication type:

Article

Calculating the Statistical Significance of Changes in Pathway Activity From Gene Expression Data.

Published in:

Statistical Applications in Genetics & Molecular Biology, 2004, v. 3, n. 1, p. 1

By:

Rahnenführer, Jörg;
Domingues, Francisco S.;
Maydt, Jochen;
Lengauer, Thomas

Publication type:

Article

ProSup: a refined tool for protein structure alignment.

Published in:

Protein Engineering, 2000, v. 13, n. 11, p. 745, doi. 10.1093/protein/13.11.745

By:

Lackner, Peter;
Koppensteiner, Walter A.;
Sippl, Manfred J.;
Domingues, Francisco S.

Publication type:

Article

Structure-derived substitution matrices for alignment of distantly related sequences.

Published in:

Protein Engineering, 2000, v. 13, n. 8, p. 545, doi. 10.1093/protein/13.8.545

By:

Prlić, Andreas;
Domingues, Francisco S.;
Sippl, Manfred J.

Publication type:

Article

Integrative visual analysis of protein sequence mutations.

Published in:

BMC Proceedings, 2014, p. 1, doi. 10.1186/1753-6561-8-S2-S2

By:

Doncheva, Nadezhda T.;
Klein, Karsten;
Morris, John H.;
Wybrow, Michael;
Domingues, Francisco S.;
Albrecht, Mario

Publication type:

Article

Towards optimal alignment of protein structure distance matrices.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. 2273, doi. 10.1093/bioinformatics/btq420

By:

Wohlers, Inken;
Domingues, Francisco S.;
Klau, Gunnar W.

Publication type:

Article

Moment invariants as shape recognition technique for comparing protein binding sites.

Published in:

Bioinformatics, 2007, v. 23, n. 23, p. 3139, doi. 10.1093/bioinformatics/btm503

By:

Ingolf Sommer;
Oliver Müller;
Francisco S. Domingues;
Oliver Sander;
Joachim Weickert;
Thomas Lengauer

Publication type:

Article

Conformational analysis of alternative protein structures.

Published in:

Bioinformatics, 2007, v. 23, n. 23, p. 3131

By:

Francisco S. Domingues;
Jörg Rahnenführer;
Thomas Lengauer

Publication type:

Article

WILMA--automated annotation of protein sequences.

Published in:

Bioinformatics, 2004, v. 20, n. 1, p. 127, doi. 10.1093/bioinformatics/btg380

By:

Andreas Prlić;
Francisco S. Domingues;
Peter Lackner;
Manfred J. Sippl

Publication type:

Article

Exome-wide association study of levodopa-induced dyskinesia in Parkinson's disease.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-99393-8

By:

König, Eva;
Nicoletti, Alessandra;
Pattaro, Cristian;
Annesi, Grazia;
Melotti, Roberto;
Gialluisi, Alessandro;
Schwienbacher, Christine;
Picard, Anne;
Blankenburg, Hagen;
Pichler, Irene;
Modugno, Nicola;
Ciullo, Marina;
Esposito, Teresa;
Domingues, Francisco S.;
Hicks, Andrew A.;
Zappia, Mario;
Pramstaller, Peter P.

Publication type:

Article

Parkin Interacts with Apoptosis-Inducing Factor and Interferes with Its Translocation to the Nucleus in Neuronal Cells.

Published in:

International Journal of Molecular Sciences, 2019, v. 20, n. 3, p. 748, doi. 10.3390/ijms20030748

By:

Guida, Marianna;
Zanon, Alessandra;
Montibeller, Luigi;
Lavdas, Alexandros A.;
Ladurner, Judith;
Pischedda, Francesca;
Rakovic, Aleksandar;
Domingues, Francisco S.;
Piccoli, Giovanni;
Klein, Christine;
Pramstaller, Peter P.;
Hicks, Andrew A.;
Pichler, Irene

Publication type:

Article

HDAC Inhibition Improves the Sarcoendoplasmic Reticulum Ca<sup>2+</sup>-ATPase Activity in Cardiac Myocytes.

Published in:

International Journal of Molecular Sciences, 2018, v. 19, n. 2, p. 419, doi. 10.3390/ijms19020419

By:

Meraviglia, Viviana;
Bocchi, Leonardo;
Sacchetto, Roberta;
Florio, Maria Cristina;
Motta, Benedetta M.;
Corti, Corrado;
Weichenberger, Christian X.;
Savi, Monia;
D’Elia, Yuri;
Rosato-Siri, Marcelo D.;
Suffredini, Silvia;
Piubelli, Chiara;
Pompilio, Giulio;
Pramstaller, Peter P.;
Domingues, Francisco S.;
Stilli, Donatella;
Rossini, Alessandra

Publication type:

Article

PAUL: protein structural alignment using integer linear programming and Lagrangian relaxation.

Published in:

BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-S13-P2

By:

Wohlers, Inken;
Petzold, Lars;
Domingues, Francisco S.;
Klau, Gunnar W.

Publication type:

Article

A network-based meta-analysis for characterizing the genetic landscape of human aging.

Published in:

Biogerontology, 2018, v. 19, n. 1, p. 81, doi. 10.1007/s10522-017-9741-5

By:

Blankenburg, Hagen;
Pramstaller, Peter P.;
Domingues, Francisco S.

Publication type:

Article

Comparative assessment of different familial aggregation methods in the context of large and unstructured pedigrees.

Published in:

Bioinformatics, 2019, v. 35, n. 1, p. 69, doi. 10.1093/bioinformatics/bty541

By:

Weichenberger, Christian X;
Rainer, Johannes;
Pattaro, Cristian;
Pramstaller, Peter P;
Domingues, Francisco S

Publication type:

Article

FamAgg: an R package to evaluate familial aggregation of traits in large pedigrees.

Published in:

Bioinformatics, 2016, v. 32, n. 10, p. 1583, doi. 10.1093/bioinformatics/btw019

By:

Rainer, Johannes;
Taliun, Daniel;
D'Elia, Yuri;
Pattaro, Cristian;
Domingues, Francisco S.;
Weichenberger, Christian X.

Publication type:

Article

Identification of HNRNPK as Regulator of Hepatitis C Virus Particle Production.

Published in:

PLoS Pathogens, 2015, v. 11, n. 1, p. 1, doi. 10.1371/journal.ppat.1004573

By:

Poenisch, Marion;
Metz, Philippe;
Blankenburg, Hagen;
Ruggieri, Alessia;
Lee, Ji-Young;
Rupp, Daniel;
Rebhan, Ilka;
Diederich, Kathrin;
Kaderali, Lars;
Domingues, Francisco S.;
Albrecht, Mario;
Lohmann, Volker;
Erfle, Holger;
Bartenschlager, Ralf

Publication type:

Article

Hospitalization, disease severity and mortality rates of patients with inflammatory rheumatic diseases as compared with the normal population in the second wave of SARS-CoV-2 infections.

Published in:

Rheumatology, 2025, v. 64, n. 1, p. 99, doi. 10.1093/rheumatology/kead637

By:

Dallagiacoma, Gloria;
Weichenberger, Christian X;
Raffeiner, Bernd;
Callegher, Sara Zandonella;
Matzneller, Peter;
Hantikainen, Essi;
Domingues, Francisco S;
Karadar, Lena;
Kuppelwieser, Iris;
Masl, Aaron;
Mian, Michael;
Maier, Armin;
Dejaco, Christian

Publication type:

Article

Profiling of Parkin-Binding Partners Using Tandem Affinity Purification.

Published in:

PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0078648

By:

Zanon, Alessandra;
Rakovic, Aleksandar;
Blankenburg, Hagen;
Doncheva, Nadezhda T.;
Schwienbacher, Christine;
Serafin, Alice;
Alexa, Adrian;
Weichenberger, Christian X.;
Albrecht, Mario;
Klein, Christine;
Hicks, Andrew A.;
Pramstaller, Peter P.;
Domingues, Francisco S.;
Pichler, Irene

Publication type:

Article

Alignment of Non-Covalent Interactions at Protein-Protein Interfaces.

Published in:

PLoS ONE, 2008, v. 3, n. 4, p. 1, doi. 10.1371/journal.pone.0001926

By:

Hongbo Zhu;
Sommer, Ingolf;
Lengauer, Thomas;
Domingues, Francisco S.

Publication type:

Article

Assessment of the CASP4 fold recognition category.

Published in:

Proteins, 2001, v. 45, n. S5, p. 55, doi. 10.1002/prot.10006

By:

Sippl, Manfred J.;
Lackner, Peter;
Domingues, Francisco S.;
Prlić, Andreas;
Malik, Rainer;
Andreeva, Antonina;
Wiederstein, Markus

Publication type:

Article

Exploring digenic inheritance in arrhythmogenic cardiomyopathy.

Published in:

BMC Medical Genetics, 2017, v. 18, p. 1, doi. 10.1186/s12881-017-0503-7

By:

König, Eva;
Volpato, Claudia Béu;
Motta, Benedetta Maria;
Blankenburg, Hagen;
Picard, Anne;
Pramstaller, Peter;
Casella, Michela;
Rauhe, Werner;
Pompilio, Giulio;
Meraviglia, Viviana;
Domingues, Francisco S.;
Sommariva, Elena;
Rossini, Alessandra

Publication type:

Article

Genome-Wide Association Study Identifies Novel Loci Associated with Circulating Phospho- and Sphingolipid Concentrations.

Published in:

PLoS Genetics, 2012, v. 8, n. 2, p. 1, doi. 10.1371/journal.pgen.1002490

By:

van Duijn, Cornelia M.;
Ugocsai, Peter;
Isaacs, Aaron;
Pramstaller, Peter P.;
Liebisch, Gerhard;
Wilson, James F.;
Johansson, Åsa;
Rudan, Igor;
Aulchenko, Yurii S.;
Kirichenko, Anatoly V.;
Janssens, A. Cecile J. W.;
Jansen, Ritsert C.;
Gnewuch, Carsten;
Domingues, Francisco S.;
Pattaro, Cristian;
Wild, Sarah H.;
Jonasson, Inger;
Polasek, Ozren;
Zorkoltseva, Irina V.;
Hofman, Albert

Publication type:

Article

SNP Prioritization Using a Bayesian Probability of Association.

Published in:

Genetic Epidemiology, 2013, v. 37, n. 2, p. 214, doi. 10.1002/gepi.21704

By:

Thompson, John R.;
Gögele, Martin;
Weichenberger, Christian X.;
Modenese, Mirko;
Attia, John;
Barrett, Jennifer H.;
Boehnke, Michael;
De Grandi, Alessandro;
Domingues, Francisco S.;
Hicks, Andrew A.;
Marroni, Fabio;
Pattaro, Cristian;
Ruggeri, Fabrizio;
Borsani, Giuseppe;
Casari, Giorgio;
Parmigiani, Giovanni;
Pastore, Andrea;
Pfeufer, Arne;
Schwienbacher, Christine;
Taliun, Daniel

Publication type:

Article

Structural localization of disease-associated sequence variations in the NACHT and LRR domains of PYPAF1 and NOD2

Published in:

FEBS Letters, 2003, v. 554, n. 3, p. 520, doi. 10.1016/S0014-5793(03)01222-5

By:

Albrecht, Mario;
Domingues, Francisco S.;
Schreiber, Stefan;
Lengauer, Thomas

Publication type:

Article

Identification of mammalian orthologs associates PYPAF5 with distinct functional roles

Published in:

FEBS Letters, 2003, v. 538, n. 1-3, p. 173, doi. 10.1016/S0014-5793(03)00161-3

By:

Albrecht, Mario;
Domingues, Francisco S.;
Schreiber, Stefan;
Lengauer, Thomas

Publication type:

Article

Metabolite and protein associations with general health in the population-based CHRIS study.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-75627-3

By:

Hantikainen, Essi;
Weichenberger, Christian X.;
Dordevic, Nikola;
Verri Hernandes, Vinicius;
Foco, Luisa;
Gögele, Martin;
Melotti, Roberto;
Pattaro, Cristian;
Ralser, Markus;
Amari, Fatma;
Farztdinov, Vadim;
Mülleder, Michael;
Pramstaller, Peter P.;
Rainer, Johannes;
Domingues, Francisco S.

Publication type:

Article

Genetic and Metabolic Determinants of Atrial Fibrillation in a General Population Sample: The CHRIS Study.

Published in:

Biomolecules (2218-273X), 2021, v. 11, n. 11, p. 1663, doi. 10.3390/biom11111663

By:

Emmert, David B.;
Vukovic, Vladimir;
Dordevic, Nikola;
Weichenberger, Christian X.;
Losi, Chiara;
D'Elia, Yuri;
Volpato, Claudia;
Hernandes, Vinicius V.;
Gögele, Martin;
Foco, Luisa;
Pontali, Giulia;
Mascalzoni, Deborah;
Domingues, Francisco S.;
Paulmichl, Rupert;
Pramstaller, Peter P.;
Pattaro, Cristian;
Rossini, Alessandra;
Rainer, Johannes;
Fuchsberger, Christian;
De Bortoli, Marzia

Publication type:

Article

Association of dietary proteins with serum creatinine and estimated glomerular filtration rate in a general population sample: the CHRIS study.

Published in:

Journal of Nephrology (JNonline), 2023, v. 36, n. 1, p. 103, doi. 10.1007/s40620-022-01409-7

By:

Vukovic, Vladimir;
Hantikainen, Essi;
Raftopoulou, Athina;
Gögele, Martin;
Rainer, Johannes;
Domingues, Francisco S.;
Pramstaller, Peter P.;
Garcia-Larsen, Vanessa;
Pattaro, Cristian

Publication type:

Article