Works by Franchini, Paolo

Results: 50

Genetic structure in lagoons: the effects of habitat discontinuity and low dispersal ability on populations of Atherina boyeri.

Published in:

Marine Biology, 2012, v. 159, n. 2, p. 399, doi. 10.1007/s00227-011-1817-1

By:

Milana, Valentina;
Franchini, Paolo;
Sola, Luciana;
Angiulli, Elisa;
Rossi, Anna

Publication type:

Article

Are sympatrically speciating Midas cichlid fish special? Patterns of morphological and genetic variation in the closely related species Archocentrus centrarchus.

Published in:

Ecology & Evolution (20457758), 2016, v. 6, n. 12, p. 4102, doi. 10.1002/ece3.2184

By:

Fruciano, Carmelo;
Franchini, Paolo;
Raffini, Francesca;
Fan, Shaohua;
Meyer, Axel

Publication type:

Article

Chromosomal rearrangements, phenotypic variation and modularity: a case study from a contact zone between house mouse Robertsonian races in Central Italy.

Published in:

Ecology & Evolution (20457758), 2016, v. 6, n. 5, p. 1353, doi. 10.1002/ece3.1912

By:

Franchini, Paolo;
Colangelo, Paolo;
Meyer, Axel;
Fruciano, Carmelo

Publication type:

Article

Transcriptomics of two evolutionary novelties: how to make a sperm-transfer organ out of an anal fin and a sexually selected 'sword' out of a caudal fin.

Published in:

Ecology & Evolution (20457758), 2015, v. 5, n. 4, p. 848, doi. 10.1002/ece3.1390

By:

Kang, Ji Hyoun;
Manousaki, Tereza;
Franchini, Paolo;
Kneitz, Susanne;
Schartl, Manfred;
Meyer, Axel

Publication type:

Article

Transcriptome characterization of the South African abalone Haliotis midae using sequencing-by-synthesis.

Published in:

BMC Research Notes, 2011, v. 4, n. 1, p. 59, doi. 10.1186/1756-0500-4-59

By:

Franchini, Paolo;
van der Merwe, Mathilde;
Roodt-Wilding, Rouvay

Publication type:

Article

Limited introgression from non‐native commercial strains and signatures of adaptation in the key pollinator Bombus terrestris.

Published in:

Molecular Ecology, 2023, v. 32, n. 21, p. 5709, doi. 10.1111/mec.17151

By:

Franchini, Paolo;
Fruciano, Carmelo;
Wood, Thomas J.;
Shastry, Vivaswat;
Goulson, Dave;
Hughes, William O. H.;
Jones, Julia C.

Publication type:

Article

Rapid adaptive radiation in a hillstream cyprinid fish in the East African White Nile River basin.

Published in:

Molecular Ecology, 2021, v. 30, n. 21, p. 5530, doi. 10.1111/mec.16130

By:

Levin, Boris;
Simonov, Evgeniy;
Franchini, Paolo;
Mugue, Nikolai;
Golubtsov, Alexander;
Meyer, Axel

Publication type:

Article

The comparative genomic landscape of adaptive radiation in crater lake cichlid fishes.

Published in:

Molecular Ecology, 2021, v. 30, n. 4, p. 955, doi. 10.1111/mec.15774

By:

Xiong, Peiwen;
Hulsey, C. Darrin;
Fruciano, Carmelo;
Wong, Wai Y.;
Nater, Alexander;
Kautt, Andreas F.;
Simakov, Oleg;
Pippel, Martin;
Kuraku, Shigehiro;
Meyer, Axel;
Franchini, Paolo

Publication type:

Article

Genome-Wide Demographic Analyses of Balaenid Whales Revealed Complex History of Gene Flow Associated with Past Climate Oscillation Open Access.

Published in:

Genome Biology & Evolution, 2025, v. 17, n. 5, p. 1, doi. 10.1093/gbe/evaf081

By:

Lo, Bai-Wei;
Real, Francisca Martinez;
Magg, Andreas;
Wise, John Pierce;
Mundlos, Stefan;
Franchini, Paolo

Publication type:

Article

Divergent Allometric Trajectories in Gene Expression and Coexpression Produce Species Differences in Sympatrically Speciating Midas Cichlid Fish.

Published in:

Genome Biology & Evolution, 2019, v. 11, n. 6, p. 1644, doi. 10.1093/gbe/evz108

By:

Fruciano, Carmelo;
Meyer, Axel;
Franchini, Paolo

Publication type:

Article

Lateralized Feeding Behavior is Associated with Asymmetrical Neuroanatomy and Lateralized Gene Expressions in the Brain in Scale-Eating Cichlid Fish.

Published in:

Genome Biology & Evolution, 2017, v. 9, n. 11, p. 3122, doi. 10.1093/gbe/evx218

By:

Schneider, Ralf F.;
Franchini, Paolo;
Meyer, Axel;
Hyuk Je Lee;
Manousaki, Tereza;
Ji Hyoun Kang;
Lein, Etienne

Publication type:

Article

The Role of microRNAs in the Repeated Parallel Diversification of Lineages of Midas Cichlid Fish from Nicaragua.

Published in:

Genome Biology & Evolution, 2016, v. 8, n. 5, p. 1543, doi. 10.1093/gbe/evw097

By:

Franchini, Paolo;
Peiwen Xiong;
Fruciano, Carmelo;
Meyer, Axel

Publication type:

Article

Comparative genomics provides insights into molecular adaptation to hypermetamorphosis and cantharidin metabolism in blister beetles (Coleoptera: Meloidae).

Published in:

Integrative Zoology, 2024, v. 19, n. 5, p. 975, doi. 10.1111/1749-4877.12819

By:

RICCIERI, Alessandra;
SPAGONI, Lucrezia;
LI, Ming;
FRANCHINI, Paolo;
ROSSI, Marianna N.;
FRATINI, Emiliano;
CERVELLI, Manuela;
BOLOGNA, Marco A.;
MANCINI, Emiliano

Publication type:

Article

Genomics and the origin of species.

Published in:

Nature Reviews Genetics, 2014, v. 15, n. 3, p. 176, doi. 10.1038/nrg3644

By:

Seehausen, Ole;
Butlin, Roger K.;
Keller, Irene;
Wagner, Catherine E.;
Boughman, Janette W.;
Hohenlohe, Paul A.;
Peichel, Catherine L.;
Saetre, Glenn-Peter;
Bank, Claudia;
Brännström, Åke;
Brelsford, Alan;
Clarkson, Chris S.;
Eroukhmanoff, Fabrice;
Feder, Jeffrey L.;
Fischer, Martin C.;
Foote, Andrew D.;
Franchini, Paolo;
Jiggins, Chris D.;
Jones, Felicity C.;
Lindholm, Anna K.

Publication type:

Article

Comparative Genomics of the Waterfowl Innate Immune System.

Published in:

Molecular Biology & Evolution, 2022, v. 39, n. 8, p. 1, doi. 10.1093/molbev/msac160

By:

Jax, Elinor;
Franchini, Paolo;
Sekar, Vaishnovi;
Ottenburghs, Jente;
Parera, Daniel Monné;
Kellenberger, Roman T;
Magor, Katharine E;
Müller, Inge;
Wikelski, Martin;
Kraus, Robert H S

Publication type:

Article

Reconstructing the Evolutionary History of Chromosomal Races on Islands: A Genome-Wide Analysis of Natural House Mouse Populations.

Published in:

Molecular Biology & Evolution, 2020, v. 37, n. 10, p. 2825, doi. 10.1093/molbev/msaa118

By:

Franchini, Paolo;
Kautt, Andreas F;
Nater, Alexander;
Antonini, Gloria;
Castiglia, Riccardo;
Meyer, Axel;
Solano, Emanuela

Publication type:

Article

MicroRNA Gene Regulation in Extremely Young and Parallel Adaptive Radiations of Crater Lake Cichlid Fish.

Published in:

Molecular Biology & Evolution, 2019, v. 36, n. 11, p. 2498, doi. 10.1093/molbev/msz168

By:

Franchini, Paolo;
Xiong, Peiwen;
Fruciano, Carmelo;
Schneider, Ralf F;
Woltering, Joost M;
Hulsey, Christopher Darrin;
Meyer, Axel

Publication type:

Article

Genome-wide diversity, population structure and signatures of inbreeding in the African buffalo in Mozambique.

Published in:

BMC Ecology & Evolution, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12862-024-02209-2

By:

Colangelo, Paolo;
Di Civita, Marika;
Bento, Carlos M.;
Franchini, Paolo;
Meyer, Axel;
Orel, Nadiya;
das Neves, Luis C. B. G.;
Mulandane, Fernando C.;
Almeida, Joao S.;
Senczuk, Gabriele;
Pilla, Fabio;
Sabatelli, Simone

Publication type:

Article

Conservation and novelty in the microRNA genomic landscape of hyperdiverse cichlid fishes.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-50124-0

By:

Xiong, Peiwen;
Schneider, Ralf F.;
Hulsey, C. Darrin;
Meyer, Axel;
Franchini, Paolo

Publication type:

Article

The venomous cocktail of the vampire snail Colubraria reticulata (Mollusca, Gastropoda).

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1648-4

By:

Modica, Maria Vittoria;
Lombardo, Fabrizio;
Franchini, Paolo;
Oliverio, Marco

Publication type:

Article

The venomous cocktail of the vampire snail Colubraria reticulata (Mollusca, Gastropoda)

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 441, doi. 10.1186/s12864-015-1648-4

By:

Modica, Maria Vittoria;
Lombardo, Fabrizio;
Franchini, Paolo;
Oliverio, Marco

Publication type:

Article

Transcriptomics of morphological color change in polychromatic Midas cichlids.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-171

By:

Henning, Frederico;
Jones, Julia C.;
Franchini, Paolo;
Meyer, Axel

Publication type:

Article

Multiple origins of the western European house mouse in the Aeolian Archipelago: clues from mtDNA and chromosomes.

Published in:

Biological Invasions, 2013, v. 15, n. 4, p. 729, doi. 10.1007/s10530-012-0322-x

By:

Solano, Emanuela;
Franchini, Paolo;
Colangelo, Paolo;
Capanna, Ernesto;
Castiglia, Riccardo

Publication type:

Article

Genetic linkage of distinct adaptive traits in sympatrically speciating crater lake cichlid fish.

Published in:

Nature Communications, 2016, v. 7, n. 9, p. 12736, doi. 10.1038/ncomms12736

By:

Fruciano, Carmelo;
Franchini, Paolo;
Kovacova, Viera;
Elmer, Kathryn R.;
Henning, Frederico;
Meyer, Axel

Publication type:

Article

Parallel evolution of Nicaraguan crater lake cichlid fishes via non-parallel routes.

Published in:

Nature Communications, 2014, v. 5, n. 10, p. 5168, doi. 10.1038/ncomms6168

By:

Elmer, Kathryn R.;
Fan, Shaohua;
Kusche, Henrik;
Luise Spreitzer, Maria;
Kautt, Andreas F.;
Franchini, Paolo;
Meyer, Axel

Publication type:

Article

Evolutionary divergence of 3' UTRs in cichlid fishes.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-4821-8

By:

Xiong, Peiwen;
Hulsey, C. Darrin;
Meyer, Axel;
Franchini, Paolo

Publication type:

Article

Diving into divergence: Differentiation in swimming performances, physiology and gene expression between locally‐adapted sympatric cichlid fishes.

Published in:

Molecular Ecology, 2020, v. 29, n. 7, p. 1219, doi. 10.1111/mec.15304

By:

Raffini, Francesca;
Schneider, Ralf F.;
Franchini, Paolo;
Kautt, Andreas F.;
Meyer, Axel

Publication type:

Article

Animal tracking meets migration genomics: transcriptomic analysis of a partially migratory bird species.

Published in:

Molecular Ecology, 2017, v. 26, n. 12, p. 3204, doi. 10.1111/mec.14108

By:

Franchini, Paolo;
Irisarri, Iker;
Fudickar, Adam;
Schmidt, Andreas;
Meyer, Axel;
Wikelski, Martin;
Partecke, Jesko

Publication type:

Article

quaddRAD: a new high-multiplexing and PCR duplicate removal ddRAD protocol produces novel evolutionary insights in a nonradiating cichlid lineage.

Published in:

Molecular Ecology, 2017, v. 26, n. 10, p. 2783, doi. 10.1111/mec.14077

By:

Franchini, Paolo;
Monné Parera, Daniel;
Kautt, Andreas F.;
Meyer, Axel

Publication type:

Article

Towards understanding the genetic basis of mouth asymmetry in the scale-eating cichlid Perissodus microlepis.

Published in:

Molecular Ecology, 2017, v. 26, n. 1, p. 77, doi. 10.1111/mec.13699

By:

Raffini, Francesca;
Fruciano, Carmelo;
Franchini, Paolo;
Meyer, Axel

Publication type:

Article

Genetic mapping of horizontal stripes in Lake Victoria cichlid fishes: benefits and pitfalls of using RAD markers for dense linkage mapping.

Published in:

Molecular Ecology, 2014, v. 23, n. 21, p. 5224, doi. 10.1111/mec.12860

By:

Henning, Frederico;
Lee, Hyuk Je;
Franchini, Paolo;
Meyer, Axel

Publication type:

Article

Genomic architecture of ecologically divergent body shape in a pair of sympatric crater lake cichlid fishes.

Published in:

Molecular Ecology, 2014, v. 23, n. 7, p. 1828, doi. 10.1111/mec.12590

By:

Franchini, Paolo;
Fruciano, Carmelo;
Spreitzer, Maria L.;
Jones, Julia C.;
Elmer, Kathryn R.;
Henning, Frederico;
Meyer, Axel

Publication type:

Article

Shaping development through mechanical strain: the transcriptional basis of diet-induced phenotypic plasticity in a cichlid fish.

Published in:

Molecular Ecology, 2013, v. 22, n. 17, p. 4516, doi. 10.1111/mec.12417

By:

Gunter, Helen M.;
Fan, Shaohua;
Xiong, Fan;
Franchini, Paolo;
Fruciano, Carmelo;
Meyer, Axel

Publication type:

Article

The evolutionary history of Xiphophorus fish and their sexually selected sword: a genome-wide approach using restriction site-associated DNA sequencing.

Published in:

Molecular Ecology, 2013, v. 22, n. 11, p. 2986, doi. 10.1111/mec.12269

By:

Jones, Julia C.;
Fan, Shaohua;
Franchini, Paolo;
Schartl, Manfred;
Meyer, Axel

Publication type:

Article

Parsing parallel evolution: ecological divergence and differential gene expression in the adaptive radiations of thick-lipped Midas cichlid fishes from Nicaragua.

Published in:

Molecular Ecology, 2013, v. 22, n. 3, p. 650, doi. 10.1111/mec.12034

By:

Manousaki, Tereza;
Hull, Pincelli M.;
Kusche, Henrik;
Machado‐Schiaffino, Gonzalo;
Franchini, Paolo;
Harrod, Chris;
Elmer, Kathryn R.;
Meyer, Axel

Publication type:

Article

Phylogenomics uncovers early hybridization and adaptive loci shaping the radiation of Lake Tanganyika cichlid fishes.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-05479-9

By:

Irisarri, Iker;
Singh, Pooja;
Koblmüller, Stephan;
Torres-Dowdall, Julián;
Henning, Frederico;
Franchini, Paolo;
Fischer, Christoph;
Lemmon, Alan R.;
Lemmon, Emily Moriarty;
Thallinger, Gerhard G.;
Sturmbauer, Christian;
Meyer, Axel

Publication type:

Article

Does divergence from normal patterns of integration increase as chromosomal fusions increase in number? A test on a house mouse hybrid zone.

Published in:

Current Zoology, 2020, v. 66, n. 5, p. 527, doi. 10.1093/cz/zoaa035

By:

Fruciano, Carmelo;
Colangelo, Paolo;
Castiglia, Riccardo;
Franchini, Paolo

Publication type:

Article

Low levels of population genetic structure in the gilthead sea bream, Sparus aurata, along the coast of Italy.

Published in:

ICES Journal of Marine Science / Journal du Conseil, 2012, v. 69, n. 1, p. 41, doi. 10.1093/icesjms/fsr175

By:

Franchini, Paolo;
Sola, Luciana;
Crosetti, Donatella;
Milana, Valentina;
Rossi, Anna Rita

Publication type:

Article

Intraspecific epigenomics divergence in brown bears (Ursus arctos): insights from genome-wide DNA methylation patterns.

Published in:

Frontiers in Ecology & Evolution, 2025, p. 1, doi. 10.3389/fevo.2024.1504225

By:

Colangelo, Paolo;
Bonapace, Ian Marc;
Gramolini, Laura;
Solano, Emanuela;
Desiato, Elisa;
Franchini, Paolo;
Gentile, Leonardo;
Guadagnini, Roberto;
Kleven, Oddmund;
Kindberg, Jonas;
Kopatz, Alexander;
Ciucci, Paolo

Publication type:

Article

Meristic co‐evolution and genomic co‐localization of lateral line scales and vertebrae in Central American cichlid fishes.

Published in:

Ecology & Evolution (20457758), 2024, v. 14, n. 9, p. 1, doi. 10.1002/ece3.70266

By:

Ehemann, Nicolas;
Franchini, Paolo;
Meyer, Axel;
Hulsey, C. Darrin

Publication type:

Article

Anaerobic Degradation of the Plant Sugar Sulfoquinovose Concomitant With H<sub>2</sub>S Production: Escherichia coli K-12 and Desulfovibrio sp. Strain DF1 as Co-culture Model.

Published in:

Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.02792

By:

Burrichter, Anna;
Denger, Karin;
Franchini, Paolo;
Huhn, Thomas;
Müller, Nicolai;
Spiteller, Dieter;
Schleheck, David

Publication type:

Article

The Gut Microbial Community of Midas Cichlid Fish in Repeatedly Evolved Limnetic-Benthic Species Pairs.

Published in:

PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0095027

By:

Franchini, Paolo;
Fruciano, Carmelo;
Frickey, Tancred;
Jones, Julia C.;
Meyer, Axel

Publication type:

Article

Resampling-Based Approaches to Study Variation in Morphological Modularity.

Published in:

PLoS ONE, 2013, v. 8, n. 7, p. 1, doi. 10.1371/journal.pone.0069376

By:

Fruciano, Carmelo;
Franchini, Paolo;
Meyer, Axel

Publication type:

Article

Genomics of Adaptation to Multiple Concurrent Stresses: Insights from Comparative Transcriptomics of a Cichlid Fish from One of Earth's Most Extreme Environments, the Hypersaline Soda Lake Magadi in Kenya, East Africa.

Published in:

Journal of Molecular Evolution, 2015, v. 81, n. 3/4, p. 90, doi. 10.1007/s00239-015-9696-6

By:

Kavembe, Geraldine;
Franchini, Paolo;
Irisarri, Iker;
Machado-Schiaffino, Gonzalo;
Meyer, Axel

Publication type:

Article

Capturing the rapidly evolving study of adaptation.

Published in:

Journal of Evolutionary Biology, 2021, v. 34, n. 6, p. 856, doi. 10.1111/jeb.13871

By:

Fruciano, Carmelo;
Franchini, Paolo;
Jones, Julia C

Publication type:

Article

REDUCED GENE FLOW AT PERICENTROMERIC LOCI IN A HYBRID ZONE INVOLVING CHROMOSOMAL RACES OF THE HOUSE MOUSE MUS MUSCULUS DOMESTICUS.

Published in:

Evolution, 2010, v. 64, n. 7, p. 2020, doi. 10.1111/j.1558-5646.2010.00964.x

By:

Franchini, Paolo;
Colangelo, Paolo;
Solano, Emanuela;
Capanna, Ernesto;
Verheyen, Erik;
Castiglia, Riccardo

Publication type:

Article

Differential Growth-Related Gene Expression in Abalone ( Haliotis midae).

Published in:

Marine Biotechnology, 2011, v. 13, n. 6, p. 1125, doi. 10.1007/s10126-011-9376-5

By:

Merwe, Mathilde;
Franchini, Paolo;
Roodt-Wilding, Rouvay

Publication type:

Article

Comparative ontogenetic and transcriptomic analyses shed light on color pattern divergence in cichlid fishes.

Published in:

Evolution & Development, 2022, v. 24, n. 5, p. 158, doi. 10.1111/ede.12416

By:

Kratochwil, Claudius F.;
Liang, Yipeng;
Gerwin, Jan;
Franchini, Paolo;
Meyer, Axel

Publication type:

Article

Long-term experimental hybridisation results in the evolution of a new sex chromosome in swordtail fish.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07648-2

By:

Franchini, Paolo;
Jones, Julia C.;
Xiong, Peiwen;
Kneitz, Susanne;
Gompert, Zachariah;
Warren, Wesley C.;
Walter, Ronald B.;
Meyer, Axel;
Schartl, Manfred

Publication type:

Article

Bacterial microcompartments for isethionate desulfonation in the taurine-degrading human-gut bacterium Bilophila wadsworthia.

Published in:

BMC Microbiology, 2021, v. 21, n. 1, p. 1, doi. 10.1186/s12866-021-02386-w

By:

Burrichter, Anna G.;
Dörr, Stefanie;
Bergmann, Paavo;
Haiß, Sebastian;
Keller, Anja;
Fournier, Corentin;
Franchini, Paolo;
Isono, Erika;
Schleheck, David

Publication type:

Article