Works by Fraenkel, Ernest

Results: 51

SAMNetWeb: identifying condition-specific networks linking signaling and transcription.

Published in:

Bioinformatics, 2015, v. 31, n. 7, p. 1124, doi. 10.1093/bioinformatics/btu748

By:

Gosline, Sara J. C.;
Oh, Coyin;
Fraenkel, Ernest

Publication type:

Article

A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data.

Published in:

Bioinformatics, 2006, v. 22, n. 4, p. 423, doi. 10.1093/bioinformatics/bti815

By:

Kenzie D. MacIsaac;
D. Benjamin Gordon;
Lena Nekludova;
Duncan T. Odom;
Joerg Schreiber;
David K. Gifford;
Richard A. Young;
Ernest Fraenkel

Publication type:

Article

Pathway-based network modeling finds hidden genes in shRNA screen for regulators of acute lymphoblastic leukemia.

Published in:

Integrative Biology, 2016, v. 8, n. 7, p. 761, doi. 10.1039/c6ib00040a

By:

Wilson, Jennifer L.;
Dalin, Simona;
Gosline, Sara;
Hemann, Michael;
Fraenkel, Ernest;
Lauffenburger, Douglas A.

Publication type:

Article

SAMNet: a network-based approach to integrate multi-dimensional high throughput datasets.

Published in:

Integrative Biology, 2012, v. 4, n. 11, p. 1415, doi. 10.1039/c2ib20072d

By:

Gosline, Sara J. C.;
Spencer, Sarah J.;
Ursu, Oana;
Fraenkel, Ernest

Publication type:

Article

Bridging high-throughput genetic and transcriptional data reveals cellular responses to alpha-synuclein toxicity.

Published in:

Nature Genetics, 2009, v. 41, n. 3, p. 316, doi. 10.1038/ng.337

By:

Yeger-Lotem, Esti;
Riva, Laura;
Su, Linhui Julie;
Gitler, Aaron D.;
Cashikar, Anil G.;
King, Oliver D.;
Auluck, Pavan K.;
Geddie, Melissa L.;
Valastyan, Julie S.;
Karger, David R.;
Lindquist, Susan;
Fraenkel, Ernest

Publication type:

Article

Tissue-specific transcriptional regulation has diverged significantly between human and mouse.

Published in:

Nature Genetics, 2007, v. 39, n. 6, p. 730, doi. 10.1038/ng2047

By:

Odom, Duncan T.;
Dowell, Robin D.;
Jacobsen, Elizabeth S.;
Gordon, William;
Danford, Timothy W.;
MacIsaac, Kenzie D.;
Rolfe, P. Alexander;
Conboy, Caitlin M.;
Gifford, David K.;
Fraenkel, Ernest

Publication type:

Article

TAMO: a flexible, object-oriented framework for analyzing transcriptional regulation using DNA-sequence motifs.

Published in:

Bioinformatics, 2005, v. 21, n. 14, p. 3164, doi. 10.1093/bioinformatics/bti481

By:

D. Benjamin Gordon;
Lena Nekludova;
Scott McCallum;
Ernest Fraenkel

Publication type:

Article

Genome-Wide Profiling of H3K56 Acetylation and Transcription Factor Binding Sites in Human Adipocytes.

Published in:

PLoS ONE, 2011, v. 6, n. 6, p. 1, doi. 10.1371/journal.pone.0019778

By:

Kinyui Alice Lo;
Bauchmann, Mary K.;
Baumann, Amy P.;
Donahue, Christopher J.;
Thiede, Mark A.;
Hayes, Lisa S.;
des Etages, Shelley Ann G.;
Fraenkel, Ernest

Publication type:

Article

The Small Molecule Genistein Increases Hepcidin Expression by Activating Stat3 and Bone Morphogenic Protein Signaling.

Published in:

FASEB Journal, 2013, v. 27, p. 223.6, doi. 10.1096/fasebj.27.1_supplement.223.6

By:

Fraenkel, Paula G.;
Zhen, Aileen W.;
Nguyen, Nancy H.;
Gibert, Yann;
Motola, Shmulik;
Buckett, Peter;
Wessling‐Resnick, Marianne;
Fraenkel, Ernest

Publication type:

Article

Core transcriptional regulatory circuitry in human hepatocytes.

Published in:

Molecular Systems Biology, 2006, v. 2, n. 1, p. E1, doi. 10.1038/msb4100059

By:

Odom, Duncan T;
Dowell, Robin D;
Jacobsen, Elizabeth S;
Nekludova, Lena;
Rolfe, P Alexander;
Danford, Timothy W;
Gifford, David K;
Fraenkel, Ernest;
Bell, Graeme I;
Young, Richard A

Publication type:

Article

Immortalized striatal precursor neurons from Huntington’s disease patient-derived iPS cells as a platform for target identification and screening for experimental therapeutics.

Published in:

Human Molecular Genetics, 2021, v. 30, n. 24, p. 2469, doi. 10.1093/hmg/ddab200

By:

Akimov, Sergey S.;
Mali Jiang;
Kedaigle, Amanda J.;
Arbez, Nicolas;
Marque, Leonard O.;
Eddings, Chelsy R.;
Ranum, Paul T.;
Whelan, Emma;
Tang, Anthony;
Wang, Ronald;
DeVine, Lauren R.;
Talbot Jr., Conover C.;
Cole, Robert N.;
Ratovitski, Tamara;
Davidson, Beverly L.;
Fraenkel, Ernest;
Ross, Christopher A.

Publication type:

Article

Treatment with JQ1, a BET bromodomain inhibitor, is selectively detrimental to R6/2 Huntington's disease mice.

Published in:

Human Molecular Genetics, 2020, v. 29, n. 2, p. 202, doi. 10.1093/hmg/ddz264

By:

Kedaigle, Amanda J;
Reidling, Jack C;
Lim, Ryan G;
Adam, Miriam;
Wu, Jie;
Wassie, Brook;
Stocksdale, Jennifer T;
Casale, Malcolm S;
Fraenkel, Ernest;
Thompson, Leslie M

Publication type:

Article

Adaptive bias correction for improved subseasonal forecasting.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38874-y

By:

Mouatadid, Soukayna;
Orenstein, Paulo;
Flaspohler, Genevieve;
Cohen, Judah;
Oprescu, Miruna;
Fraenkel, Ernest;
Mackey, Lester

Publication type:

Article

Intratumoral drug-releasing microdevices allow in situ high-throughput pharmaco phenotyping in patients with gliomas.

Published in:

Science Translational Medicine, 2023, v. 15, n. 712, p. 1, doi. 10.1126/scitranslmed.adi0069

By:

Peruzzi, Pierpaolo;
Dominas, Christine;
Fell, Geoffrey;
Bernstock, Joshua D.;
Blitz, Sarah;
Mazzetti, Debora;
Zdioruk, Mykola;
Dawood, Hassan Y.;
Triggs, Daniel V.;
Ahn, Sebastian W.;
Bhagavatula, Sharath K.;
Davidson, Shawn M.;
Tatarova, Zuzana;
Pannell, Michael;
Truman, Kyla;
Ball, Anna;
Gold, Maxwell P.;
Pister, Veronika;
Fraenkel, Ernest;
Chiocca, E. Antonio

Publication type:

Article

Large-Scale Discovery of ERK2 Substrates Identifies ERK-Mediated Transcriptional Regulation by ETV3.

Published in:

Science Signaling, 2011, v. 4, n. 196, p. 1, doi. 10.1126/scisignal.2002010

By:

Carlson, Scott M.;
Chouinard, Candace R.;
Labadorf, Adam;
Lam, Carol J.;
Schmelzle, Katrin;
Fraenkel, Ernest;
White, Forest M.

Publication type:

Article

Integrating Proteomic, Transcriptional, and Interactome Data Reveals Hidden Components of Signaling and Regulatory Networks.

Published in:

Science Signaling, 2009, v. 2, n. 81, p. 1, doi. 10.1126/scisignal.2000350

By:

Shao-shan Carol Huang;
Fraenkel, Ernest

Publication type:

Article

Practical Strategies for Discovering Regulatory DNA Sequence Motifs.

Published in:

PLoS Computational Biology, 2006, v. 2, n. 4, p. e36, doi. 10.1371/journal.pcbi.0020036

By:

MacIsaac, Kenzie D.;
Fraenkel, Ernest

Publication type:

Article

Network Modeling Identifies Patient-specific Pathways in Glioblastoma.

Published in:

Scientific Reports, 2016, p. 28668, doi. 10.1038/srep28668

By:

Tuncbag, Nurcan;
Milani, Pamela;
Pokorny, Jenny L.;
Johnson, Hannah;
Sio, Terence T.;
Dalin, Simona;
Iyekegbe, Dennis O.;
White, Forest M.;
Sarkaria, Jann N.;
Fraenkel, Ernest

Publication type:

Article

Cell freezing protocol suitable for ATAC-Seq on motor neurons derived from human induced pluripotent stem cells.

Published in:

Scientific Reports, 2016, p. 25474, doi. 10.1038/srep25474

By:

Milani, Pamela;
Escalante-Chong, Renan;
Shelley, Brandon C.;
Patel-Murray, Natasha L.;
Xin, Xiaofeng;
Adam, Miriam;
Mandefro, Berhan;
Sareen, Dhruv;
Svendsen, Clive N.;
Fraenkel, Ernest

Publication type:

Article

Network modeling of kinase inhibitor polypharmacology reveals pathways targeted in chemical screens.

Published in:

PLoS ONE, 2017, v. 12, n. 10, p. 1, doi. 10.1371/journal.pone.0185650

By:

Ursu, Oana;
Gosline, Sara J. C.;
Beeharry, Neil;
Fink, Lauren;
Bhattacharjee, Vikram;
Huang, Shao-shan Carol;
Zhou, Yan;
Yen, Tim;
Fraenkel, Ernest

Publication type:

Article

Erratum: High-resolution computational models of genome binding events.

Published in:

2006

By:

Qi, Yuan;
Rolfe, Alex;
MacIsaac, Kenzie D;
Gerber, Georg K;
Pokholok, Dmitry;
Zeitlinger, Julia;
Danford, Timothy;
Dowell, Robin D;
Fraenkel, Ernest;
Jaakkola, Tommi S;
Young, Richard A;
Gifford, David K

Publication type:

Correction Notice

High-resolution computational models of genome binding events.

Published in:

Nature Biotechnology, 2006, v. 24, n. 8, p. 963, doi. 10.1038/nbt1233

By:

Yuan Qi;
Rolfe, Alex;
MacIsaac, Kenzie D.;
Gerber, Georg K.;
Pokholok, Dmitry;
Zeitlinger, Julia;
Danford, Timothy;
Dowell, Robin D.;
Fraenkel, Ernest;
Jaakkola, Tommi S.;
Young, Richard A.;
Gifford, David K.

Publication type:

Article

Computational discovery of gene modules and regulatory networks.

Published in:

Nature Biotechnology, 2003, v. 21, n. 11, p. 1337

By:

Gerber, Georg K.;
Lee, Tong Ihn;
Rinaldi, Nicola J.;
Yoo, Jane Y.;
Robert, François;
Gordon, D. Benjamin;
Fraenkel, Ernest;
Jaakkola, Tommi S.;
Young, Richard A.;
Gifford, David K.

Publication type:

Article

Single cell metabolism: current and future trends.

Published in:

Metabolomics, 2022, v. 18, n. 10, p. 1, doi. 10.1007/s11306-022-01934-3

By:

Ali, Ahmed;
Davidson, Shawn;
Fraenkel, Ernest;
Gilmore, Ian;
Hankemeier, Thomas;
Kirwan, Jennifer A.;
Lane, Andrew N.;
Lanekoff, Ingela;
Larion, Mioara;
McCall, Laura-Isobel;
Murphy, Michael;
Sweedler, Jonathan V.;
Zhu, Caigang

Publication type:

Article

Unbiased, Genome-Wide In Vivo Mapping of Transcriptional Regulatory Elements Reveals Sex Differences in Chromatin Structure Associated with Sex-Specific Liver Gene Expression.

Published in:

2012

By:

Ling, Guoyu;
Sugathan, Aarathi;
Mazor, Tali;
Fraenkel, Ernest;
Waxman, David J.

Publication type:

Correction Notice

Unbiased, Genome-Wide In Vivo Mapping of Transcriptional Regulatory Elements Reveals Sex Differences in Chromatin Structure Associated with Sex-Specific Liver Gene Expression.

Published in:

Molecular & Cellular Biology, 2010, v. 30, n. 23, p. 5531, doi. 10.1128/MCB.00601-10

By:

Guoyu Ling;
Sugathan, Aarathi;
Mazor, Tali;
Fraenkel, Ernest;
Waxman, David J.

Publication type:

Article

Comparative proteomic analysis highlights metabolic dysfunction in α-synucleinopathy.

Published in:

NPJ Parkinson's Disease, 2020, v. 6, n. 1, p. 1, doi. 10.1038/s41531-020-00143-w

By:

Sarkar, Souvarish;
Murphy, Michael A.;
Dammer, Eric B.;
Olsen, Abby L.;
Rangaraju, Srikant;
Fraenkel, Ernest;
Feany, Mel B.

Publication type:

Article

Comparison of X-ray and NMR structures for the Antennapedia homeodomain?DNA complex.

Published in:

Nature Structural Biology, 1998, v. 5, n. 8, p. 692, doi. 10.1038/1382

By:

Fraenkel, Ernest;
Pabo, Carl O.

Publication type:

Article

Network-Based Interpretation of Diverse High-Throughput Datasets through the Omics Integrator Software Package.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004879

By:

Tuncbag, Nurcan;
Gosline, Sara J. C.;
Kedaigle, Amanda;
Soltis, Anthony R.;
Gitter, Anthony;
Fraenkel, Ernest

Publication type:

Article

Linking Proteomic and Transcriptional Data through the Interactome and Epigenome Reveals a Map of Oncogene-induced Signaling.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 2, p. 1, doi. 10.1371/journal.pcbi.1002887

By:

Huang, Shao-shan Carol;
Clarke, David C.;
Gosline, Sara J. C.;
Labadorf, Adam;
Chouinard, Candace R.;
Gordon, William;
Lauffenburger, Douglas A.;
Fraenkel, Ernest

Publication type:

Article

A Quantitative Model of Transcriptional Regulation Reveals the Influence of Binding Location on Expression.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000773

By:

MacIsaac, Kenzie D.;
Lo, Kinyui A.;
Gordon, William;
Motola, Shmulik;
Mazor, Tali;
Fraenkel, Ernest

Publication type:

Article

An integrative systems-biology approach defines mechanisms of Alzheimer's disease neurodegeneration.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-59654-w

By:

Leventhal, Matthew J.;
Zanella, Camila A.;
Kang, Byunguk;
Peng, Jiajie;
Gritsch, David;
Liao, Zhixiang;
Bukhari, Hassan;
Wang, Tao;
Pao, Ping-Chieh;
Danquah, Serwah;
Benetatos, Joseph;
Nehme, Ralda;
Farhi, Samouil;
Tsai, Li-Huei;
Dong, Xianjun;
Scherzer, Clemens R.;
Feany, Mel B.;
Fraenkel, Ernest

Publication type:

Article

Transcriptomic changes in oligodendrocytes and precursor cells associate with clinical outcomes of Parkinson's disease.

Published in:

Molecular Brain, 2024, v. 17, n. 1, p. 1, doi. 10.1186/s13041-024-01128-z

By:

Dehestani, Mohammad;
Kozareva, Velina;
Blauwendraat, Cornelis;
Fraenkel, Ernest;
Gasser, Thomas;
Bansal, Vikas

Publication type:

Article

Identification of gene fusions associated with amyotrophic lateral sclerosis.

Published in:

Muscle & Nerve, 2024, v. 69, n. 4, p. 477, doi. 10.1002/mus.28043

By:

Raghav, Yogindra;
Dilliott, Allison A.;
Petrozziello, Tiziana;
Kim, Spencer E.;
Berry, James D.;
Cudkowicz, Merit E.;
Vakili, Khashayar;
Fraenkel, Ernest;
Farhan, Sali M. K.;
Sadri‐Vakili, Ghazaleh

Publication type:

Article

Identifying amyotrophic lateral sclerosis through interactions with an internet search engine.

Published in:

Muscle & Nerve, 2024, v. 69, n. 1, p. 40, doi. 10.1002/mus.27991

By:

Yom‐Tov, Elad;
Navar, Indu;
Fraenkel, Ernest;
Berry, James D.

Publication type:

Article

Rare variant analyses validate known ALS genes in a multi-ethnic population and identifies ANTXR2 as a candidate in PLS.

Published in:

BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-10538-1

By:

Pottinger, Tess D.;
Motelow, Joshua E.;
Povysil, Gundula;
Moreno, Cristiane A. Martins;
Ren, Zhong;
Phatnani, Hemali;
Harms, Matthew B.;
Kwan, Justin;
Sareen, Dhruv;
Wang, Han-I.;
Broach, James R.;
Simmons, Zachary;
Arcila-Londono, Ximena;
Parrott, Steve;
Lee, Edward B.;
Deerlin, Vivianna M. Van;
Fraenkel, Ernest;
Ostrow, Lyle W.;
Baas, Frank;
Zaitlen, Noah

Publication type:

Article

Identifying therapeutic targets by combining transcriptional data with ordinal clinical measurements.

Published in:

Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-00353-6

By:

Pirhaji, Leila;
Milani, Pamela;
Dalin, Simona;
Wassie, Brook T.;
Dunn, Denise E.;
Fenster, Robert J.;
Avila-Pacheco, Julian;
Greengard, Paul;
Clish, Clary B.;
Heiman, Myriam;
Lo, Donald C.;
Fraenkel, Ernest

Publication type:

Article

Foxp3 occupancy and regulation of key target genes during T-cell stimulation.

Published in:

Nature, 2007, v. 445, n. 7130, p. 931, doi. 10.1038/nature05478

By:

Marson, Alexander;
Kretschmer, Karsten;
Frampton, Garrett M.;
Jacobsen, Elizabeth S.;
Polansky, Julia K.;
MacIsaac, Kenzie D.;
Levine, Stuart S.;
Fraenkel, Ernest;
von Boehmer, Harald;
Young, Richard A.

Publication type:

Article

Transcriptional regulatory code of a eukaryotic genome.

Published in:

Nature, 2004, v. 431, n. 7004, p. 99, doi. 10.1038/nature02800

By:

Harbison, Christopher T.;
Gordon, D. Benjamin;
Lee, Tong Ihn;
Rinaldi, Nicola J.;
Macisaac, Kenzie D.;
Danford, Timothy W.;
Hannett, Nancy M.;
Tagne, Jean-Bosco;
Reynolds, David B.;
Yoo, Jane;
Jennings, Ezra G.;
Zeitlinger, Julia;
Pokholok, Dmirty K.;
Kellis, Manolis;
Rolfe, P. Alex;
Takusagawa, Ken T.;
Lander, Eric S.;
Gifford, David K.;
Fraenkel, Ernest;
Young, Richard A.

Publication type:

Article

APOE4 is Associated with Differential Regional Vulnerability to Bioenergetic Deficits in Aged APOE Mice.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-61142-8

By:

Area-Gomez, Estela;
Larrea, Delfina;
Pera, Marta;
Agrawal, Rishi R.;
Guilfoyle, David N.;
Pirhaji, Leila;
Shannon, Kathleen;
Arain, Hirra A.;
Ashok, Archana;
Chen, Qiuying;
Dillman, Allissa A.;
Figueroa, Helen Y.;
Cookson, Mark R.;
Gross, Steven S.;
Fraenkel, Ernest;
Duff, Karen E.;
Nuriel, Tal

Publication type:

Article

Self-supervised learning of cell type specificity from immunohistochemical images.

Published in:

Bioinformatics, 2022, v. 38, p. i395, doi. 10.1093/bioinformatics/btac263

By:

Murphy, Michael;
Jegelka, Stefanie;
Fraenkel, Ernest

Publication type:

Article

The cycad genotoxin methylazoxymethanol, linked to Guam ALS/PDC, induces transcriptional mutagenesis.

Published in:

Acta Neuropathologica Communications, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40478-024-01725-y

By:

Verheijen, Bert M.;
Chung, Claire;
Thompson, Ben;
Kim, Hyunjin;
Nakahara, Asa;
Anink, Jasper J.;
Mills, James D.;
NYGC ALS Consortium;
Phatnani, Hemali;
Kwan, Justin;
Sareen, Dhruv;
Broach, James R.;
Simmons, Zachary;
Arcila-Londono, Ximena;
Lee, Edward B.;
Van Deerlin, Vivianna M.;
Shneider, Neil A.;
Fraenkel, Ernest;
Ostrow, Lyle W.;
Baas, Frank

Publication type:

Article

Integrative analysis reveals a conserved role for the amyloid precursor protein in proteostasis during aging.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-42822-1

By:

Nithianandam, Vanitha;
Bukhari, Hassan;
Leventhal, Matthew J.;
Battaglia, Rachel A.;
Dong, Xianjun;
Fraenkel, Ernest;
Feany, Mel B.

Publication type:

Article

Bmi1 Promotes Erythroid Development Through Regulating Ribosome Biogenesis.

Published in:

Stem Cells, 2015, v. 33, n. 3, p. 925, doi. 10.1002/stem.1896

By:

Gao, Rui;
Kobayashi, Michihiro;
Yu, Hao;
Vemula, Sasidhar;
Yoder, Mervin C.;
Kapur, Reuben;
Liu, Yan;
Chen, Sisi;
Young, Sara K.;
Wek, Ronald C.;
Zhang, Yingchi;
Wan, Yang;
Zhu, Xiaofan;
Soltis, Anthony;
Fraenkel, Ernest;
Yu, Ming;
Cantor, Alan;
Antipin, Yevgeniy;
Xu, Yang;
Ellis, Steven R.

Publication type:

Article

Characteristics of myeloproliferative neoplasms in patients exposed to ionizing radiation following the Chernobyl nuclear accident.

Published in:

American Journal of Hematology, 2019, v. 94, n. 1, p. 62, doi. 10.1002/ajh.25307

By:

Poluben, Larysa;
Puligandla, Maneka;
Neuberg, Donna;
Bryke, Christine R.;
Hsu, Yahsuan;
Shumeiko, Oleksandr;
Yuan, Xin;
Voznesensky, Olga;
Pihan, German;
Adam, Miriam;
Fraenkel, Ernest;
Rasnic, Roni;
Linial, Michal;
Klymenko, Sergiy;
Balk, Steven P.;
Fraenkel, Paula G.

Publication type:

Article

NeuroLINCS Proteomics: Defining human-derived iPSC proteomes and protein signatures of pluripotency.

Published in:

Scientific Data, 2023, v. 10, n. 1, p. 1, doi. 10.1038/s41597-022-01687-7

By:

Matlock, Andrea D.;
Vaibhav, Vineet;
Holewinski, Ronald;
Venkatraman, Vidya;
Dardov, Victoria;
Manalo, Danica-Mae;
Shelley, Brandon;
Ornelas, Loren;
Banuelos, Maria;
Mandefro, Berhan;
Escalante-Chong, Renan;
Li, Jonathan;
Finkbeiner, Steve;
Fraenkel, Ernest;
Rothstein, Jeffrey;
Thompson, Leslie;
Sareen, Dhruv;
Svendsen, Clive N.;
NIH NeuroLINCS Consortium;
Van Eyk, Jennifer E.

Publication type:

Article

SteinerNet: a web server for integrating ‘omic’ data to discover hidden components of response pathways.

Published in:

Nucleic Acids Research, 2012, v. 40, p. W505, doi. 10.1093/nar/gks445

By:

Tuncbag, Nurcan;
McCallum, Scott;
Shao-shan Carol Huang;
Fraenkel, Ernest

Publication type:

Article

ResponseNet: revealing signaling and regulatory networks linking genetic and transcriptomic screening data.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_2, p. W424, doi. 10.1093/nar/gkr359

By:

Lan, Alex;
Smoly, Ilan Y.;
Rapaport, Guy;
Lindquist, Susan;
Fraenkel, Ernest;
Yeger-Lotem, Esti

Publication type:

Article

WebMOTIFS: automated discovery, filtering and scoring of DNA sequence motifs using multiple programs and Bayesian approaches.

Published in:

Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W217, doi. 10.1093/nar/gkm376

By:

Romer, Katherine A.;
Kayombya, Guy-Richard;
Fraenkel, Ernest

Publication type:

Article

SOX2 Co-Occupies Distal Enhancer Elements with Distinct POU Factors in ESCs and NPCs to Specify Cell State.

Published in:

PLoS Genetics, 2013, v. 9, n. 2, p. 1, doi. 10.1371/journal.pgen.1003288

By:

Lodato, Michael A.;
Ng, Christopher W.;
Wamstad, Joseph A.;
Cheng, Albert W.;
Thai, Kevin K.;
Fraenkel, Ernest;
Jaenisch, Rudolf;
Boyer, Laurie A.

Publication type:

Article