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Characteristics of myeloproliferative neoplasms in patients exposed to ionizing radiation following the Chernobyl nuclear accident.
- Published in:
- American Journal of Hematology, 2019, v. 94, n. 1, p. 62, doi. 10.1002/ajh.25307
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- Article
TAMO: a flexible, object-oriented framework for analyzing transcriptional regulation using DNA-sequence motifs.
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- Bioinformatics, 2005, v. 21, n. 14, p. 3164, doi. 10.1093/bioinformatics/bti481
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- Article
Integrative analysis reveals a conserved role for the amyloid precursor protein in proteostasis during aging.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-42822-1
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- Article
Adaptive bias correction for improved subseasonal forecasting.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38874-y
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- Article
Foxp3 occupancy and regulation of key target genes during T-cell stimulation.
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- Nature, 2007, v. 445, n. 7130, p. 931, doi. 10.1038/nature05478
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- Article
Transcriptional regulatory code of a eukaryotic genome.
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- Nature, 2004, v. 431, n. 7004, p. 99, doi. 10.1038/nature02800
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- Article
Identifying therapeutic targets by combining transcriptional data with ordinal clinical measurements.
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- Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-00353-6
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- Article
Bridging high-throughput genetic and transcriptional data reveals cellular responses to alpha-synuclein toxicity.
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- Nature Genetics, 2009, v. 41, n. 3, p. 316, doi. 10.1038/ng.337
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- Article
Tissue-specific transcriptional regulation has diverged significantly between human and mouse.
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- Nature Genetics, 2007, v. 39, n. 6, p. 730, doi. 10.1038/ng2047
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- Article
Rare variant analyses validate known ALS genes in a multi-ethnic population and identifies ANTXR2 as a candidate in PLS.
- Published in:
- BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-10538-1
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- Article
SOX2 Co-Occupies Distal Enhancer Elements with Distinct POU Factors in ESCs and NPCs to Specify Cell State.
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- PLoS Genetics, 2013, v. 9, n. 2, p. 1, doi. 10.1371/journal.pgen.1003288
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- Article
Network-Based Interpretation of Diverse High-Throughput Datasets through the Omics Integrator Software Package.
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- PLoS Computational Biology, 2016, v. 12, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004879
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- Article
Pathway-based network modeling finds hidden genes in shRNA screen for regulators of acute lymphoblastic leukemia.
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- Integrative Biology, 2016, v. 8, n. 7, p. 761, doi. 10.1039/c6ib00040a
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- Article
SAMNet: a network-based approach to integrate multi-dimensional high throughput datasets.
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- Integrative Biology, 2012, v. 4, n. 11, p. 1415, doi. 10.1039/c2ib20072d
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- Article
Integrating Proteomic, Transcriptional, and Interactome Data Reveals Hidden Components of Signaling and Regulatory Networks.
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- Science Signaling, 2009, v. 2, n. 81, p. 1, doi. 10.1126/scisignal.2000350
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- Article
Erratum: High-resolution computational models of genome binding events.
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- 2006
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- Correction notice
High-resolution computational models of genome binding events.
- Published in:
- Nature Biotechnology, 2006, v. 24, n. 8, p. 963, doi. 10.1038/nbt1233
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- Article
Computational discovery of gene modules and regulatory networks.
- Published in:
- Nature Biotechnology, 2003, v. 21, n. 11, p. 1337
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- Article
Single cell metabolism: current and future trends.
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- Metabolomics, 2022, v. 18, n. 10, p. 1, doi. 10.1007/s11306-022-01934-3
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- Article
Linking Proteomic and Transcriptional Data through the Interactome and Epigenome Reveals a Map of Oncogene-induced Signaling.
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- PLoS Computational Biology, 2013, v. 9, n. 2, p. 1, doi. 10.1371/journal.pcbi.1002887
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- Publication type:
- Article
A Quantitative Model of Transcriptional Regulation Reveals the Influence of Binding Location on Expression.
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- PLoS Computational Biology, 2010, v. 6, n. 4, p. 1, doi. 10.1371/journal.pcbi.1000773
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- Article
Practical Strategies for Discovering Regulatory DNA Sequence Motifs.
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- PLoS Computational Biology, 2006, v. 2, n. 4, p. e36, doi. 10.1371/journal.pcbi.0020036
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- Article
Self-supervised learning of cell type specificity from immunohistochemical images.
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- Bioinformatics, 2022, v. 38, p. i395, doi. 10.1093/bioinformatics/btac263
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- Publication type:
- Article
Comparative proteomic analysis highlights metabolic dysfunction in α-synucleinopathy.
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- NPJ Parkinson's Disease, 2020, v. 6, n. 1, p. 1, doi. 10.1038/s41531-020-00143-w
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- Article
The cycad genotoxin methylazoxymethanol, linked to Guam ALS/PDC, induces transcriptional mutagenesis.
- Published in:
- Acta Neuropathologica Communications, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40478-024-01725-y
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- Publication type:
- Article
APOE4 is Associated with Differential Regional Vulnerability to Bioenergetic Deficits in Aged APOE Mice.
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- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-61142-8
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- Article
Genome-Wide Profiling of H3K56 Acetylation and Transcription Factor Binding Sites in Human Adipocytes.
- Published in:
- PLoS ONE, 2011, v. 6, n. 6, p. 1, doi. 10.1371/journal.pone.0019778
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- Article
Bmi1 Promotes Erythroid Development Through Regulating Ribosome Biogenesis.
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- Stem Cells, 2015, v. 33, n. 3, p. 925, doi. 10.1002/stem.1896
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- Publication type:
- Article
Network Modeling Identifies Patient-specific Pathways in Glioblastoma.
- Published in:
- Scientific Reports, 2016, p. 28668, doi. 10.1038/srep28668
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- Publication type:
- Article
Cell freezing protocol suitable for ATAC-Seq on motor neurons derived from human induced pluripotent stem cells.
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- Scientific Reports, 2016, p. 25474, doi. 10.1038/srep25474
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- Publication type:
- Article
NeuroLINCS Proteomics: Defining human-derived iPSC proteomes and protein signatures of pluripotency.
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- Scientific Data, 2023, v. 10, n. 1, p. 1, doi. 10.1038/s41597-022-01687-7
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- Article
SteinerNet: a web server for integrating ‘omic’ data to discover hidden components of response pathways.
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- Nucleic Acids Research, 2012, v. 40, p. W505, doi. 10.1093/nar/gks445
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- Article
ResponseNet: revealing signaling and regulatory networks linking genetic and transcriptomic screening data.
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- Nucleic Acids Research, 2011, v. 39, n. suppl_2, p. W424, doi. 10.1093/nar/gkr359
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- Publication type:
- Article
Large-Scale Discovery of ERK2 Substrates Identifies ERK-Mediated Transcriptional Regulation by ETV3.
- Published in:
- Science Signaling, 2011, v. 4, n. 196, p. 1, doi. 10.1126/scisignal.2002010
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- Article
Network modeling of kinase inhibitor polypharmacology reveals pathways targeted in chemical screens.
- Published in:
- PLoS ONE, 2017, v. 12, n. 10, p. 1, doi. 10.1371/journal.pone.0185650
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- Article
SAMNetWeb: identifying condition-specific networks linking signaling and transcription.
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- Bioinformatics, 2015, v. 31, n. 7, p. 1124, doi. 10.1093/bioinformatics/btu748
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- Article
A hypothesis-based approach for identifying the binding specificity of regulatory proteins from chromatin immunoprecipitation data.
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- Bioinformatics, 2006, v. 22, n. 4, p. 423, doi. 10.1093/bioinformatics/bti815
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- Article
WebMOTIFS: automated discovery, filtering and scoring of DNA sequence motifs using multiple programs and Bayesian approaches.
- Published in:
- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W217, doi. 10.1093/nar/gkm376
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- Publication type:
- Article
Intratumoral drug-releasing microdevices allow in situ high-throughput pharmaco phenotyping in patients with gliomas.
- Published in:
- Science Translational Medicine, 2023, v. 15, n. 712, p. 1, doi. 10.1126/scitranslmed.adi0069
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- Article
Transcriptomic changes in oligodendrocytes and precursor cells associate with clinical outcomes of Parkinson's disease.
- Published in:
- Molecular Brain, 2024, v. 17, n. 1, p. 1, doi. 10.1186/s13041-024-01128-z
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- Publication type:
- Article
Immortalized striatal precursor neurons from Huntington’s disease patient-derived iPS cells as a platform for target identification and screening for experimental therapeutics.
- Published in:
- Human Molecular Genetics, 2021, v. 30, n. 24, p. 2469, doi. 10.1093/hmg/ddab200
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- Article
Treatment with JQ1, a BET bromodomain inhibitor, is selectively detrimental to R6/2 Huntington's disease mice.
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- Human Molecular Genetics, 2020, v. 29, n. 2, p. 202, doi. 10.1093/hmg/ddz264
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- Article
Identification of gene fusions associated with amyotrophic lateral sclerosis.
- Published in:
- Muscle & Nerve, 2024, v. 69, n. 4, p. 477, doi. 10.1002/mus.28043
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- Article
Identifying amyotrophic lateral sclerosis through interactions with an internet search engine.
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- Muscle & Nerve, 2024, v. 69, n. 1, p. 40, doi. 10.1002/mus.27991
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- Publication type:
- Article
Comparison of X-ray and NMR structures for the Antennapedia homeodomain?DNA complex.
- Published in:
- Nature Structural Biology, 1998, v. 5, n. 8, p. 692, doi. 10.1038/1382
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- Article
PCSF: An R-package for network-based interpretation of high-throughput data.
- Published in:
- PLoS Computational Biology, 2017, v. 13, n. 7, p. 1, doi. 10.1371/journal.pcbi.1005694
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- Article
Core transcriptional regulatory circuitry in human hepatocytes.
- Published in:
- Molecular Systems Biology, 2006, v. 2, n. 1, p. E1, doi. 10.1038/msb4100059
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- Article