Works matching AU Forrest, Alistair

Results: 83

Human genetics and genomics meetings going virtual: practical lessons learned from two international meetings in early 2020.

Published in:

Human Genomics, 2020, v. 14, n. 1, p. 1, doi. 10.1186/s40246-020-00275-3

By:

Forrest, Alistair R. R.;
Repetto, Gabriela M.;
Reichardt, Juergen K. V.

Publication type:

Article

Discovery of Transcription Factors Novel to Mouse Cerebellar Granule Cell Development Through Laser-Capture Microdissection.

Published in:

Cerebellum, 2018, v. 17, n. 3, p. 308, doi. 10.1007/s12311-017-0912-3

By:

Zhang, Peter G. Y.;
Yeung, Joanna;
Gupta, Ishita;
Ramirez, Miguel;
Ha, Thomas;
Swanson, Douglas J.;
Nagao-Sato, Sayaka;
Itoh, Masayoshi;
Kawaji, Hideya;
Lassmann, Timo;
Daub, Carsten O.;
Arner, Erik;
de Hoon, Michiel;
the FANTOM consortium;
Carninci, Piero;
Forrest, Alistair R. R.;
Hayashizaki, Yoshihide;
Goldowitz, Dan

Publication type:

Article

CCL2 enhances pluripotency of human induced pluripotent stem cells by activating hypoxia related genes.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep05228

By:

Yuki Hasegawa;
Tang, Dave;
Naoko Takahashi;
Yoshihide Hayashizaki;
Forrest, Alistair R. R.;
Harukazu Suzuki

Publication type:

Article

The commitment of the human cell atlas to humanity.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-54306-x

By:

Amit, Ido;
Ardlie, Kristin;
Arzuaga, Fabiana;
Awandare, Gordon;
Bader, Gary;
Bernier, Alexander;
Carninci, Piero;
Donnelly, Stacey;
Eils, Roland;
Forrest, Alistair R. R.;
Greely, Henry T.;
Guigo, Roderic;
Hacohen, Nir;
Haniffa, Muzlifah;
Kirby, Emily Sarah;
Knoppers, Bartha Maria;
Kriegstein, Arnold;
Lein, Ed S.;
Linnarsson, Sten;
Majumder, Partha P.

Publication type:

Article

Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows.

Published in:

Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02048-6

By:

Denisenko, Elena;
Guo, Belinda B.;
Jones, Matthew;
Hou, Rui;
de Kock, Leanne;
Lassmann, Timo;
Poppe, Daniel;
Clément, Olivier;
Simmons, Rebecca K.;
Lister, Ryan;
Forrest, Alistair R. R.

Publication type:

Article

Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D856, doi. 10.1093/nar/gkq1112

By:

Kawaji, Hideya;
Severin, Jessica;
Lizio, Marina;
Forrest, Alistair R. R.;
van Nimwegen, Erik;
Rehli, Michael;
Schroder, Kate;
Irvine, Katharine;
Suzuki, Harukazu;
Carninci, Piero;
Hayashizaki, Yoshihide;
Daub, Carsten O.

Publication type:

Article

Building promoter aware transcriptional regulatory networks using siRNA perturbation and deepCAGE.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 22, p. 8141, doi. 10.1093/nar/gkq729

By:

Vitezic, Morana;
Lassmann, Timo;
Forrest, Alistair R. R.;
Suzuki, Masanori;
Tomaru, Yasuhiro;
Kawai, Jun;
Carninci, Piero;
Suzuki, Harukazu;
Hayashizaki, Yoshihide;
Daub, Carsten O.

Publication type:

Article

Improved CRISPR/Cas9 gene editing in primary human myoblasts using low confluency cultures on Matrigel.

Published in:

Skeletal Muscle, 2021, v. 11, n. 1, p. 1, doi. 10.1186/s13395-021-00278-1

By:

Goullée, Hayley;
Taylor, Rhonda L.;
Forrest, Alistair R. R.;
Laing, Nigel G.;
Ravenscroft, Gianina;
Clayton, Joshua S.

Publication type:

Article

Specific Mesothelial Signature Marks the Heterogeneity of Mesenchymal Stem Cells From High-Grade Serous Ovarian Cancer.

Published in:

Stem Cells, 2014, v. 32, n. 11, p. 2998, doi. 10.1002/stem.1791

By:

Verardo, Roberto;
Piazza, Silvano;
Klaric, Enio;
Ciani, Yari;
Bussadori, Giulio;
Marzinotto, Stefania;
Mariuzzi, Laura;
Cesselli, Daniela;
Beltrami, Antonio P.;
Mano, Miguel;
Itoh, Masayoshi;
Kawaji, Hideya;
Lassmann, Timo;
Carninci, Piero;
Hayashizaki, Yoshihide;
Forrest, Alistair R. R.;
Beltrami, Carlo A.;
Schneider, Claudio

Publication type:

Article

Corrigendum: Tiny RNAs associated with transcription start sites in animals.

Published in:

2009

By:

Taft, Ryan J;
Glazov, Evgeny A;
Cloonan, Nicole;
Simons, Cas;
Stephen, Stuart;
Faulkner, Geoffrey J;
Lassmann, Timo;
Forrest, Alistair R R;
Grimmond, Sean M;
Schroder, Kate;
Irvine, Katharine;
Arakawa, Takahiro;
Nakamura, Mari;
Kubosaki, Atsutaka;
Hayashida, Kengo;
Kawazu, Chika;
Murata, Mitsuyoshi;
Nishiyori, Hiromi;
Fukuda, Shiro;
Kawai, Jun

Publication type:

Correction Notice

The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.

Published in:

Nature Genetics, 2009, v. 41, n. 5, p. 553, doi. 10.1038/ng.375

By:

Suzuki, Harukazu;
Forrest, Alistair R R;
van Nimwegen, Erik;
Daub, Carsten O;
Balwierz, Piotr J;
Irvine, Katharine M;
Lassmann, Timo;
Ravasi, Timothy;
Hasegawa, Yuki;
de Hoon, Michiel J L;
Katayama, Shintaro;
Schroder, Kate;
Carninci, Piero;
Tomaru, Yasuhiro;
Kanamori-Katayama, Mutsumi;
Kubosaki, Atsutaka;
Akalin, Altuna;
Ando, Yoshinari;
Arner, Erik;
Asada, Maki

Publication type:

Article

The regulated retrotransposon transcriptome of mammalian cells.

Published in:

Nature Genetics, 2009, v. 41, n. 5, p. 563, doi. 10.1038/ng.368

By:

Faulkner, Geoffrey J.;
Kimura, Yasumasa;
Daub, Carsten O.;
Shivangi Wani;
Plessy, Charles;
Irvine, Katharine M.;
Schroder, Kate;
Cloonan, Nicole;
Steptoe, Anita L.;
Lassmann, Timo;
Waki, Kazunori;
Hornig, Nadine;
Arakawa, Takahiro;
Takahashi, Hazuki;
Kawai, Jun;
Forrest, Alistair R. R.;
Suzuki, Harukazu;
Hayashizaki, Yoshihide;
Hume, David A.;
Orlando, Valerio

Publication type:

Article

Tiny RNAs associated with transcription start sites in animals.

Published in:

Nature Genetics, 2009, v. 41, n. 5, p. 572, doi. 10.1038/ng.312

By:

Taft, Ryan J.;
Glazov, Evgeny A.;
Cloonan, Nicole;
Simons, Cas;
Stephen, Stuart;
Faulkner, Geoffrey J.;
Lassmann, Timo;
Forrest, Alistair R. R.;
Grimmond, Sean M.;
Schroder, Kate;
Irvine, Katharine;
Arakawa, Takahiro;
Nakamura, Mari;
Kubosaki, Atsutaka;
Hayashida, Kengo;
Kawazu, Chika;
Murata, Mitsuyoshi;
Nishiyori, Hiromi;
Fukuda, Shiro;
Kawai, Jun

Publication type:

Article

Corrigendum: Genome-wide analysis of mammalian promoter architecture and evolution.

Published in:

2007

By:

Carninci, Piero;
Sandelin, Albin;
Lenhard, Boris;
Katayama, Shintaro;
Shimokawa, Kazuro;
Ponjavic, Jasmina;
Semple, Colin A. M.;
Taylor, Martin S.;
Engström G, Pär G.;
Frith, Martin C.;
Forrest, Alistair R. R.;
Alkema, Wynand B.;
Tan, Sin Lam;
Plessy, Charles;
Kodzius, Rimantas;
Ravasi, Timothy;
Kasukawa, Takeya;
Fukuda, Shiro;
Kanamori-Katayama, Mutsumi;
Kitazume, Yayoi

Publication type:

Correction Notice

Genome-wide analysis of mammalian promoter architecture and evolution.

Published in:

Nature Genetics, 2006, v. 38, n. 6, p. 626, doi. 10.1038/ng1789

By:

Carninci, Piero;
Sandelin, Albin;
Lenhard, Boris;
Katayama, Shintaro;
Shimokawa, Kazuro;
Ponjavic, Jasmina;
Semple, Colin A. M.;
Taylor, Martin S.;
Engström, Pär G.;
Frith, Martin C.;
Forrest, Alistair R. R.;
Alkema, Wynand B.;
Sin Lam Tan;
Plessy, Charles;
Kodzius, Rimantas;
Ravasi, Timothy;
Kasukawa, Takeya;
Fukuda, Shiro;
Kanamori-Katayama, Mutsumi;
Kitazume, Yayoi

Publication type:

Article

Identification of novel cerebellar developmental transcriptional regulators with motif activity analysis.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-6063-9

By:

Ha, Thomas J.;
Zhang, Peter G. Y.;
Robert, Remi;
Yeung, Joanna;
Swanson, Douglas J.;
Mathelier, Anthony;
Wasserman, Wyeth W.;
Im, Sujin;
Itoh, Masayoshi;
Kawaji, Hideya;
Lassmann, Timo;
Daub, Carsten O.;
Arner, Erik;
Carninci, Piero;
Hayashizaki, Yoshihide;
Forrest, Alistair R. R.;
Goldowitz, Daniel

Publication type:

Article

The Abundance of Short Proteins<br /> in the Mammalian Proteome.

Published in:

PLoS Genetics, 2006, v. 2, n. 4, p. e52, doi. 10.1371/journal.pgen.0020052

By:

Frith, Martin C.;
Forrest, Alistair R.;
Nourbakhsh, Ehsan;
Pang, Ken C.;
Kai, Chikatoshi;
Kawai, Jun;
Carninci, Piero;
Hayashizaki, Yoshihide;
Bailey, Timothy L.;
Grimmond, Sean M.

Publication type:

Article

Pseudo-Messenger RNA: Phantoms<br /> of the Transcriptome.

Published in:

PLoS Genetics, 2006, v. 2, n. 4, p. e23, doi. 10.1371/journal.pgen.0020023

By:

Frith, Martin C.;
Wilming, Laurens G.;
Forrest, Alistair;
Kawaji, Hideya;
Sin Lam Tan;
Wahlestedt, Claes;
Bajic, Vladimir B.;
Kai, Chikatoshi;
Kawai, Jun;
Carninci, Piero;
Hayashizaki, Yoshihide;
Bailey, Timothy L.;
Huminiecki, Lukasz

Publication type:

Article

Transcript Annotation in FANTOM3:<br /> Mouse Gene Catalog Based on Physical<br /> cDNAs.

Published in:

PLoS Genetics, 2006, v. 2, n. 4, p. e62, doi. 10.1371/journal.pgen.0020062

By:

Maeda, Norihiro;
Kasukawa, Takeya;
Oyama, Rieko;
Gough, Julian;
Frith, Martin;
Engström, Pär G.;
Lenhard, Boris;
Aturaliya, Rajith N.;
Batalov, Serge;
Beisel, Kirk W.;
Bult, Carol J.;
Fletcher, Colin F.;
Forrest, Alistair R. R.;
Furuno, Masaaki;
Hill, David;
Itoh, Masayoshi;
Kanamori-Katayama, Mutsumi;
Katayama, Shintaro;
Katoh, Masaru;
Kawashima, Tsugumi

Publication type:

Article

Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance.

Published in:

Nature Genetics, 2014, v. 46, n. 6, p. 558, doi. 10.1038/ng.2965

By:

Fort, Alexandre;
Hashimoto, Kosuke;
Yamada, Daisuke;
Salimullah, Md;
Keya, Chaman A;
Saxena, Alka;
Bonetti, Alessandro;
Voineagu, Irina;
Bertin, Nicolas;
Kratz, Anton;
Noro, Yukihiko;
Wong, Chee-Hong;
de Hoon, Michiel;
Andersson, Robin;
Sandelin, Albin;
Suzuki, Harukazu;
Wei, Chia-Lin;
Koseki, Haruhiko;
Hasegawa, Yuki;
Forrest, Alistair R R

Publication type:

Article

Correction: MaxHiC: A robust background correction model to identify biologically relevant chromatin interactions in Hi-C and capture Hi-C experiments.

Published in:

2022

By:

Alinejad-Rokny, Hamid;
Ghavami Modegh, Rassa;
Rabiee, Hamid R.;
Ramezani Sarbandi, Ehsan;
Rezaie, Narges;
Tam, Kin Tung;
Forrest, Alistair R. R.

Publication type:

Correction Notice

MaxHiC: A robust background correction model to identify biologically relevant chromatin interactions in Hi-C and capture Hi-C experiments.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 6, p. 1, doi. 10.1371/journal.pcbi.1010241

By:

Alinejad-Rokny, Hamid;
Ghavami Modegh, Rassa;
Rabiee, Hamid R.;
Ramezani Sarbandi, Ehsan;
Rezaie, Narges;
Tam, Kin Tung;
Forrest, Alistair R. R.

Publication type:

Article

Intra- and intertumoral heterogeneity of liver metastases in a patient with uveal melanoma revealed by single-cell RNA sequencing.

Published in:

Cold Spring Harbor Molecular Case Studies, 2021, v. 7, n. 5, p. 1, doi. 10.1101/mcs.a006111

By:

Weitao Lin;
Beasley, Aaron B.;
Ardakani, Nima Mesbah;
Calapre, Leslie;
Jones, Matthew;
Wood, Benjamin A.;
Warburton, Lydia;
Forrest, Alistair R. R.;
Gray, Elin S.

Publication type:

Article

Subcellular Localization of Mammalian Type II Membrane Proteins.

Published in:

Traffic, 2006, v. 7, n. 5, p. 613, doi. 10.1111/j.1600-0854.2006.00407.x

By:

Aturaliya, Rajith N.;
Fink, J. Lynn;
Davis, Melissa J.;
Teasdale, Melvena S.;
Hanson, Kelly A.;
Miranda, Kevin C.;
Forrest, Alistair R. R.;
Grimmond, Sean M.;
Suzuki, Harukazu;
Kanamori, Mutsumi;
Kai, Chikatoshi;
Kawai, Jun;
Carninci, Piero;
Hayashizaki, Yoshihide;
Teasdale, Rohan D.

Publication type:

Article

Immune checkpoint therapy responders display early clonal expansion of tumor infiltrating lymphocytes.

Published in:

OncoImmunology, 2024, v. 13, n. 1, p. 1, doi. 10.1080/2162402X.2024.2345859

By:

Kidman, Joel;
Zemek, Rachael M.;
Sidhom, John-William;
Correa, Debora;
Principe, Nicola;
Sheikh, Fezaan;
Fear, Vanessa S.;
Forbes, Catherine A.;
Chopra, Abha;
Boon, Louis;
Zaitouny, Ayham;
de Jong, Emma;
Holt, Robert A.;
Jones, Matt;
Millward, Michael J.;
Lassmann, Timo;
Forrest, Alistair R.R.;
Nowak, Anna K.;
Watson, Mark;
Lake, Richard A.

Publication type:

Article

Temporally restricted activation of IFNβ signaling underlies response to immune checkpoint therapy in mice.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-32567-8

By:

Zemek, Rachael M.;
Chin, Wee Loong;
Fear, Vanessa S.;
Wylie, Ben;
Casey, Thomas H.;
Forbes, Cath;
Tilsed, Caitlin M.;
Boon, Louis;
Guo, Belinda B.;
Bosco, Anthony;
Forrest, Alistair R. R.;
Millward, Michael J.;
Nowak, Anna K.;
Lake, Richard A.;
Lassmann, Timo;
Joost Lesterhuis, W.

Publication type:

Article

Reinforcing the association between distal 1q CNVs and structural brain disorder: A case of a complex 1q43-q44 CNV and a review of the literature.

Published in:

American Journal of Medical Genetics. Part B: Neuropsychiatric Genetics, 2016, v. 171B, n. 3, p. 458, doi. 10.1002/ajmg.b.32427

By:

Hemming, Isabel A.;
Forrest, Alistair R. R.;
Shipman, Peter;
Woodward, Karen J.;
Walsh, Peter;
Ravine, David G.;
Heng, Julian Ik‐Tsen

Publication type:

Article

The Evolution of Human Cells in Terms of Protein Innovation.

Published in:

Molecular Biology & Evolution, 2014, v. 31, n. 6, p. 1364, doi. 10.1093/molbev/mst139

By:

Sardar, Adam J.;
Oates, Matt E.;
Fang, Hai;
Forrest, Alistair R.R.;
Kawaji, Hideya;
Gough, Julian;
Rackham, Owen J.L.

Publication type:

Article

scMatch: a single-cell gene expression profile annotation tool using reference datasets.

Published in:

Bioinformatics, 2019, v. 35, n. 22, p. 4688, doi. 10.1093/bioinformatics/btz292

By:

Hou, Rui;
Denisenko, Elena;
Forrest, Alistair R R

Publication type:

Article

CAGEd-oPOSSUM: motif enrichment analysis from CAGE-derived TSSs.

Published in:

Bioinformatics, 2016, v. 32, n. 18, p. 2858, doi. 10.1093/bioinformatics/btw337

By:

Arenillas, David J.;
Wasserman, Wyeth W.;
Mathelier, Anthony;
Forrest, Alistair R. R.;
Kawaji, Hideya;
Lassmann, Timo

Publication type:

Article

CAGExploreR: an R package for the analysis and visualization of promoter dynamics across multiple experiments.

Published in:

Bioinformatics, 2014, v. 30, n. 8, p. 1183

By:

Dimont, Emmanuel;
Hofmann, Oliver;
Ho Sui, Shannan J.;
Forrest, Alistair R. R.;
Kawaji, Hideya;
Hide, Winston

Publication type:

Article

Time-course RNAseq data of murine AB1 mesothelioma and Renca renal cancer following immune checkpoint therapy.

Published in:

Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-03294-0

By:

Chin, Wee Loong;
Zemek, Rachael M.;
Tilsed, Caitlin M.;
Forrest, Alistair R. R.;
Fear, Vanessa S.;
Forbes, Catherine;
Boon, Louis;
Bosco, Anthony;
Guo, Belinda B.;
Millward, Michael J.;
Nowak, Anna K.;
Lake, Richard A.;
Lesterhuis, W. Joost;
Lassmann, Timo

Publication type:

Article

CAGE-defined promoter regions of the genes implicated in Rett Syndrome.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 3494, doi. 10.1186/1471-2164-15-1177

By:

Vitezic, Morana;
Bertin, Nicolas;
Andersson, Robin;
Lipovich, Leonard;
Kawaji, Hideya;
Lassmann, Timo;
Sandelin, Albin;
Heutink, Peter;
Goldowitz, Dan;
Ha, Thomas;
Peter Zhang;
Patrizi, Annarita;
Fagiolini, Michela;
Forrest, Alistair R. R.;
Carninci, Piero;
Saxena, Alka

Publication type:

Article

Mesencephalic dopaminergic neurons express a repertoire of olfactory receptors and respond to odorant-like molecules.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 729, doi. 10.1186/1471-2164-15-729

By:

Grison, Alice;
Zucchelli, Silvia;
Urzì, Alice;
Zamparo, Ilaria;
Lazarevic, Dejan;
Pascarella, Giovanni;
Roncaglia, Paola;
Giorgetti, Alejandro;
Garcia-Esparcia, Paula;
Vlachouli, Christina;
Simone, Roberto;
Persichetti, Francesca;
Forrest, Alistair R. R.;
Yoshihide Hayashizaki;
Carloni, Paolo;
Ferrer, Isidro;
Lodovichi, Claudia;
Plessy, Charles;
Carninci, Piero;
Gustincich, Stefano

Publication type:

Article

Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-120

By:

Rye, Morten;
Kjetil Sandve, Geir;
Daub, Carsten O.;
Kawaji, Hideya;
Carninci, Piero;
Forrest, Alistair R. R.;
Drabløs, Finn

Publication type:

Article

Effects of cytosine methylation on transcription factor binding sites.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-119

By:

Medvedeva, Yulia A.;
Khamis, Abdullah M.;
Kulakovskiy, Ivan V.;
Wail Ba-Alawi;
Bhuyan, Md Shariful I.;
Kawaji, Hideya;
Lassmann, Timo;
Harbers, Matthias;
Forrest, Alistair R. R.;
Bajic, Vladimir B.

Publication type:

Article

RECLU: a pipeline to discover reproducible transcriptional start sites and their alternative regulation using capped analysis of gene expression (CAGE).

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-269

By:

Ohmiya, Hiroko;
Vitezic, Morana;
Frith, Martin C.;
Itoh, Masayoshi;
Carninci, Piero;
Forrest, Alistair R. R.;
Hayashizaki, Yoshihide;
Lassmann, Timo

Publication type:

Article

Corrigendum: A draft network of ligand-receptor-mediated multicellular signalling in human.

Published in:

Nature Communications, 2016, v. 7, n. 2, p. 10706, doi. 10.1038/ncomms10706

By:

Ramilowski, Jordan A.;
Goldberg, Tatyana;
Harshbarger, Jayson;
Kloppmann, Edda;
Lizio, Marina;
Satagopam, Venkata P.;
Itoh, Masayoshi;
Kawaji, Hideya;
Carninci, Piero;
Rost, Burkhard;
Forrest, Alistair R. R.

Publication type:

Article

A draft network of ligand-receptor-mediated multicellular signalling in human.

Published in:

Nature Communications, 2015, v. 6, n. 7, p. 7866, doi. 10.1038/ncomms8866

By:

Ramilowski, Jordan A.;
Goldberg, Tatyana;
Harshbarger, Jayson;
Kloppman, Edda;
Lizio, Marina;
Satagopam, Venkata P.;
Itoh, Masayoshi;
Kawaji, Hideya;
Carninci, Piero;
Rost, Burkhard;
Forrest, Alistair R. R.

Publication type:

Article

The statistical geometry of transcriptome divergence in cell-type evolution and cancer.

Published in:

Nature Communications, 2015, v. 6, n. 1, p. 6066, doi. 10.1038/ncomms7066

By:

Liang, Cong;
Forrest, Alistair R.R.;
Wagner, Günter P.

Publication type:

Article

Correction to: Relatively frequent switching of transcription start sites during cerebellar development.

Published in:

2018

By:

Zhang, Peter;
Dimont, Emmanuel;
Ha, Thomas;
Swanson, Douglas J.;
Itoh, Masayoshi;
Kawaji, Hideya;
Lassmann, Timo;
Daub, Carsten O.;
Arner, Erik;
Carninci, Piero;
Hayashizaki, Yoshihide;
Forrest, Alistair R. R.;
Hide, Winston;
Goldowitz, Dan

Publication type:

Correction Notice

PhosphoregDB: The tissue and sub-cellular distribution of mammalian protein kinases and phosphatases.

Published in:

BMC Bioinformatics, 2006, v. 7, p. 82, doi. 10.1186/1471-2105-7-82

By:

Forrest, Alistair RR;
Taylor, Darrin F;
Fink, J Lynn;
Gongora, M Milena;
Flegg, Cameron;
Teasdale, Rohan D;
Suzuki, Harukazu;
Kanamori, Mutsumi;
Kai, Chikatoshi;
Hayashizaki, Yoshihide;
Grimmond, Sean M

Publication type:

Article

Transcriptional Dynamics Reveal Critical Roles for Non-coding RNAs in the Immediate-Early Response.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004217

By:

Aitken, Stuart;
Magi, Shigeyuki;
Alhendi, Ahmad M. N.;
Itoh, Masayoshi;
Kawaji, Hideya;
Lassmann, Timo;
Daub, Carsten O.;
Arner, Erik;
Carninci, Piero;
Forrest, Alistair R. R.;
Hayashizaki, Yoshihide;
null, null;
Khachigian, Levon M.;
Okada-Hatakeyama, Mariko;
Semple, Colin A.

Publication type:

Article

Missing Plasma, Faulty Gel, or Something Else?

Published in:

Clinical Chemistry, 2020, v. 66, n. 4, p. 625, doi. 10.1093/clinchem/hvaa015

By:

Tsui, Albert K. Y.;
Füzéry, Anna K.;
Szkotak, Artur;
Forrest, Alistair

Publication type:

Article

Systematic analysis of transcription start sites in avian development.

Published in:

PLoS Biology, 2017, v. 15, n. 9, p. 1, doi. 10.1371/journal.pbio.2002887

By:

Lizio, Marina;
Deviatiiarov, Ruslan;
Nagai, Hiroki;
Galan, Laura;
Arner, Erik;
Itoh, Masayoshi;
Lassmann, Timo;
Kasukawa, Takeya;
Hasegawa, Akira;
Ros, Marian A.;
Hayashizaki, Yoshihide;
Carninci, Piero;
Forrest, Alistair R. R.;
Kawaji, Hideya;
Gusev, Oleg;
Sheng, Guojun

Publication type:

Article

Annotating non-coding transcription using functional genomics strategies.

Published in:

Briefings in Functional Genomics & Proteomics, 2009, v. 8, n. 6, p. 437, doi. 10.1093/bfgp/elp041

By:

Forrest, Alistair R. R.;
Abdelhamid, Rehab F.;
Carninci, Piero

Publication type:

Article

Molecular Insights Into Regulatory T-Cell Adaptation to Self, Environment, and Host Tissues: Plasticity or Loss of Function in Autoimmune Disease.

Published in:

Frontiers in Immunology, 2020, v. 11, p. N.PAG, doi. 10.3389/fimmu.2020.01269

By:

Brown, Cheryl Y.;
Sadlon, Timothy;
Hope, Christopher M.;
Wong, Ying Y.;
Wong, Soon;
Liu, Ning;
Withers, Holly;
Brown, Katherine;
Bandara, Veronika;
Gundsambuu, Batjargal;
Pederson, Stephen;
Breen, James;
Robertson, Sarah Anne;
Forrest, Alistair;
Beyer, Marc;
Barry, Simon Charles

Publication type:

Article

Mapping Mammalian Cell-type-specific Transcriptional Regulatory Networks Using KD-CAGE and ChIP-seq Data in the TC-YIK Cell Line.

Published in:

Frontiers in Genetics, 2015, v. 6, p. 1, doi. 10.3389/fgene.2015.00331

By:

Lizio, Marina;
Yuri Ishizu;
Masayoshi Itoh;
Timo Lassmann;
Akira Hasegawa;
Atsutaka Kubosaki;
Severin, Jessica;
Hideya Kawaji;
Yukio Nakamura;
Harukazu Suzuki;
Yoshihide Hayashizaki;
Carninci, Piero;
Forrest, Alistair R. R.;
Boden, Mikael

Publication type:

Article

Novel genes regulated by Sonic Hedgehog in pluripotent mesenchymal cells.

Published in:

Oncogene, 2002, v. 21, n. 53, p. 8196, doi. 10.1038/sj.onc.1205975

By:

Ingram, Wendy J;
Wicking, Carol A;
Grimmond, Sean M;
Forrest, Alistair R;
Wainwright, Brandon J

Publication type:

Article

Cdc25B activity is regulated by 14-3-3.

Published in:

Oncogene, 2001, v. 20, n. 32, p. 4393, doi. 10.1038/sj.onc.1204574

By:

Forrest, Alistair;
Gabrielli, Brian

Publication type:

Article