Found: 25
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Structure-based learning to predict and model protein--DNA interactions and transcription-factor co-operativity in cis-regulatory elements.
- Published in:
- NAR Genomics & Bioinformatics, 2024, v. 6, n. 2, p. 1, doi. 10.1093/nargab/lqae068
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- Article
Erratum.
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- Nucleic Acids Research, 2018, v. 46, n. D1, p. D1284, doi. 10.1093/nar/gkx1188
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- Article
JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework.
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- Nucleic Acids Research, 2018, v. 46, n. D1, p. D260, doi. 10.1093/nar/gkx1126
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- Article
Evaluating the impact of single nucleotide variants on transcription factor binding.
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- Nucleic Acids Research, 2016, v. 44, n. 21, p. 10106, doi. 10.1093/nar/gkw691
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- Article
JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles.
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- Nucleic Acids Research, 2016, v. 44, n. 1, p. D110, doi. 10.1093/nar/gkv1176
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- Article
SBILib: a handle for protein modeling and engineering.
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- Bioinformatics, 2023, v. 39, n. 10, p. 1, doi. 10.1093/bioinformatics/btad613
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- Article
Transcriptional reprogramming by mutated IRF4 in lymphoma.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-41954-8
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- Article
Biologically relevant transfer learning improves transcription factor binding prediction.
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- Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02499-5
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- Article
Networks of ProteinProtein Interactions: From Uncertainty to Molecular Details.
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- Molecular Informatics, 2012, v. 31, n. 5, p. 342, doi. 10.1002/minf.201200005
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- Article
Backup in gene regulatory networks explains differences between binding and knockout results.
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- Molecular Systems Biology, 2009, v. 5, n. 1, p. 276, doi. 10.1038/msb.2009.33
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- Article
A multimorphic mutation in IRF4 causes human autosomal dominant combined immunodeficiency.
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- Science Immunology, 2023, v. 8, n. 79, p. 1, doi. 10.1126/sciimmunol.ade7953
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- Article
Erratum: Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis.
- Published in:
- Nature Communications, 2016, v. 7, n. 10, p. 13205, doi. 10.1038/ncomms13205
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- Article
Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis.
- Published in:
- Nature Communications, 2016, v. 7, n. 8, p. 12460, doi. 10.1038/ncomms12460
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- Publication type:
- Article
ExplaiNN: interpretable and transparent neural networks for genomics.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02985-y
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- Publication type:
- Article
InteractoMIX: a suite of computational tools to exploit interactomes in biological and clinical research.
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- Biochemical Society Transactions, 2016, v. 44, n. 3, p. 917, doi. 10.1042/BST20150001
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- Article
JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles.
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- Nucleic Acids Research, 2024, v. 52, n. D1, p. D174, doi. 10.1093/nar/gkad1059
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- Publication type:
- Article
OnTarget: in silico design of MiniPromoters for targeted delivery of expression.
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- Nucleic Acids Research, 2023, v. 51, n. W1, p. W379, doi. 10.1093/nar/gkad375
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- Publication type:
- Article
JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles.
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- Nucleic Acids Research, 2022, v. 50, n. D1, p. D165, doi. 10.1093/nar/gkab1113
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- Publication type:
- Article
JASPAR 2020: update of the open-access database of transcription factor binding profiles.
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- Nucleic Acids Research, 2020, v. 48, n. D1, p. D87, doi. 10.1093/nar/gkz1001
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- Publication type:
- Article
GeneBreaker: Variant simulation to improve the diagnosis of Mendelian rare genetic diseases.
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- Human Mutation, 2021, v. 42, n. 4, p. 346, doi. 10.1002/humu.24163
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- Article
Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study.
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- Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-01996-3
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- Article
Cross-species examination of X-chromosome inactivation highlights domains of escape from silencing.
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- Epigenetics & Chromatin, 2021, v. 14, n. 1, p. 1, doi. 10.1186/s13072-021-00386-8
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- Article
Gene expression models based on transcription factor binding events confer insight into functional cis-regulatory variants.
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- Bioinformatics, 2019, v. 35, n. 15, p. 2610, doi. 10.1093/bioinformatics/bty992
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- Article
ModLink: improving fold recognition by using protein-protein interactions.
- Published in:
- Bioinformatics, 2009, v. 25, n. 12, p. 1506, doi. 10.1093/bioinformatics/btp238
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- Article
SPServer: split-statistical potentials for the analysis of protein structures and protein–protein interactions.
- Published in:
- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-020-03770-5
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- Article