Works by Fordyce, Polly

Results: 23

Mutations to transcription factor MAX allosterically increase DNA selectivity by altering folding and binding pathways.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-024-55672-2

By:

Hastings, Renee;
Aditham, Arjun K.;
DelRosso, Nicole;
Suzuki, Peter H.;
Fordyce, Polly M.

Publication type:

Article

Phosphatase specificity principles uncovered by MRBLE:Dephos and global substrate identification.

Published in:

Molecular Systems Biology, 2023, v. 19, n. 12, p. 1, doi. 10.15252/msb.202311782

By:

Hein, Jamin B;
Nguyen, Hieu T;
Garvanska, Dimitriya H;
Nasa, Isha;
Kruse, Thomas;
Feng, Yinnian;
Lopez Mendez, Blanca;
Davey, Norman;
Kettenbach, Arminja N;
Fordyce, Polly M;
Nilsson, Jakob

Publication type:

Article

Diversification of DNA binding specificities enabled SREBP transcription regulators to expand the repertoire of cellular functions that they govern in fungi.

Published in:

PLoS Genetics, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.pgen.1007884

By:

del Olmo Toledo, Valentina;
Puccinelli, Robert;
Fordyce, Polly M.;
Pérez, J. Christian

Publication type:

Article

Double emulsions as a high-throughput enrichment and isolation platform for slower-growing microbes.

Published in:

ISME Communications, 2023, v. 3, n. 1, p. 1, doi. 10.1038/s43705-023-00241-9

By:

McCully, Alexandra L;
Loop Yao, McKenna;
Brower, Kara K;
Fordyce, Polly M;
Spormann, Alfred M

Publication type:

Article

Microfluidic affinity and ChIP-seq analyses converge on a conserved FOXP2-binding motif in chimp and human, which enables the detection of evolutionarily novel targets.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 12, p. 5991, doi. 10.1093/nar/gkt259

By:

Nelson, Christopher S.;
Fuller, Chris K.;
Fordyce, Polly M.;
Greninger, Alexander L.;
Li, Hao;
DeRisi, Joseph L.

Publication type:

Article

Combined optical trapping and single-molecule fluorescence.

Published in:

Journal of Biology, 2003, v. 2, n. 1, p. 6, doi. 10.1186/1475-4924-2-6

By:

Lang, Matthew J.;
Fordyce, Polly M.;
Block, Steven M.

Publication type:

Article

Eg5 steps it up!

Published in:

Cell Division, 2006, v. 1, p. 31, doi. 10.1186/1747-1028-1-31

By:

Valentine, Megan T.;
Fordyce, Polly M.;
Block, Steven M.

Publication type:

Article

DeCoDe: degenerate codon design for complete protein-coding DNA libraries.

Published in:

Bioinformatics, 2020, v. 36, n. 11, p. 3357, doi. 10.1093/bioinformatics/btaa162

By:

Shimko, Tyler C;
Fordyce, Polly M;
Orenstein, Yaron

Publication type:

Article

Discovering epistatic feature interactions from neural network models of regulatory DNA sequences.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. i629, doi. 10.1093/bioinformatics/bty575

By:

Greenside, Peyton;
Shimko, Tyler;
Fordyce, Polly;
Kundaje, Anshul

Publication type:

Article

FACS‐Sortable Triple Emulsion Picoreactors for Screening Reactions in Biphasic Environments.

Published in:

Advanced Materials Interfaces, 2025, v. 12, n. 3, p. 1, doi. 10.1002/admi.202400403

By:

Thompson, Samuel;
Zhang, Yanrong;
Yang, Zijian;
Nichols, Lisa;
Fordyce, Polly M.

Publication type:

Article

Hydraulic expulsion of tumbu fly larvae.

Published in:

2014

By:

Dybbro, Eric;
Fordyce, Polly;
Ponte, Maya;
Arron, Sarah T

Publication type:

journal article

Hydraulic Expulsion of Tumbu Fly Larvae.

Published in:

JAMA Dermatology, 2014, v. 150, n. 7, p. 791, doi. 10.1001/jamadermatol.2013.9571

By:

Dybbro, Eric;
Fordyce, Polly;
Ponte, Maya;
Arron, Sarah T.

Publication type:

Article

Live imaging of Aiptasia larvae, a model system for coral and anemone bleaching, using a simple microfluidic device.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-45167-2

By:

Van Treuren, Will;
Brower, Kara K.;
Labanieh, Louai;
Hunt, Daniel;
Lensch, Sarah;
Cruz, Bianca;
Cartwright, Heather N.;
Tran, Cawa;
Fordyce, Polly M.

Publication type:

Article

MRBLES 2.0: High-throughput generation of chemically functionalized spectrally and magnetically encoded hydrogel beads using a simple single-layer microfluidic device.

Published in:

Microsystems & Nanoengineering, 2020, v. 6, n. 1, p. 1, doi. 10.1038/s41378-020-00220-3

By:

Feng, Yinnian;
White, Adam K.;
Hein, Jamin B.;
Appel, Eric A.;
Fordyce, Polly M.

Publication type:

Article

Structure of the transcriptional network controlling white-opaque switching in C andida albicans.

Published in:

Molecular Microbiology, 2013, v. 90, n. 1, p. 22, doi. 10.1111/mmi.12329

By:

Hernday, Aaron D.;
Lohse, Matthew B.;
Fordyce, Polly M.;
Nobile, Clarissa J.;
DeRisi, Joseph L.;
Johnson, Alexander D.

Publication type:

Article

An open-source software analysis package for Microspheres with Ratiometric Barcode Lanthanide Encoding (MRBLEs).

Published in:

PLoS ONE, 2019, v. 14, n. 3, p. 1, doi. 10.1371/journal.pone.0203725

By:

Harink, Björn;
Nguyen, Huy;
Thorn, Kurt;
Fordyce, Polly

Publication type:

Article

On the dependent recognition of some long zinc finger proteins.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 11, p. 5364, doi. 10.1093/nar/gkad207

By:

Zuo, Zheng;
Billings, Timothy;
Walker, Michael;
Petkov, Petko M;
Fordyce, Polly M;
Stormo, Gary D

Publication type:

Article

High-throughput chromatin accessibility profiling at single-cell resolution.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-05887-x

By:

Mezger, Anja;
Klemm, Sandy;
Mann, Ishminder;
Brower, Kara;
Mir, Alain;
Bostick, Magnolia;
Farmer, Andrew;
Fordyce, Polly;
Linnarsson, Sten;
Greenleaf, William

Publication type:

Article

Simultaneous, coincident optical trapping and single-molecule fluorescence.

Published in:

Nature Methods, 2004, v. 1, n. 2, p. 133, doi. 10.1038/nmeth714

By:

Lang, Matthew J.;
Fordyce, Polly M.;
Engh, Anita M.;
Neuman, Keir C;
Block, Steven M.

Publication type:

Article

Individual dimers of the mitotic kinesin motor Eg5 step processively and support substantial loads in vitro.

Published in:

Nature Cell Biology, 2006, v. 8, n. 5, p. 470, doi. 10.1038/ncb1394

By:

Valentine, Megan T.;
Fordyce, Polly M.;
Krzysiak, Troy C.;
Gilbert, Susan P.;
Block, Steven M.

Publication type:

Article

Programmable Microfluidic Synthesis of Over One Thousand Uniquely Identifiable Spectral Codes.

Published in:

Advanced Optical Materials, 2017, v. 5, n. 3, p. n/a, doi. 10.1002/adom.201600548

By:

Nguyen, Huy Q.;
Baxter, Brian C.;
Brower, Kara;
Diaz-Botia, Camilo A.;
DeRisi, Joseph L.;
Fordyce, Polly M.;
Thorn, Kurt S.

Publication type:

Article

Satb1 integrates DNA binding site geometry and torsional stress to differentially target nucleosome-dense regions.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-11118-8

By:

Ghosh, Rajarshi P.;
Shi, Quanming;
Yang, Linfeng;
Reddick, Michael P.;
Nikitina, Tatiana;
Zhurkin, Victor B.;
Fordyce, Polly;
Stasevich, Timothy J.;
Chang, Howard Y.;
Greenleaf, William J.;
Liphardt, Jan T.

Publication type:

Article

De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis.

Published in:

Nature Biotechnology, 2010, v. 28, n. 9, p. 970, doi. 10.1038/nbt.1675

By:

Fordyce, Polly M.;
Gerber, Doron;
Tran, Danh;
Zheng, Jiashun;
Li, Hao;
DeRisi, Joseph L.;
Quake, Stephen R.

Publication type:

Article