Works by Fonseca, Vagner

Results: 59

    • A new lineage nomenclature to aid genomic surveillance of dengue virus.

      Published in:
      PLoS Biology, 2024, v. 22, n. 9, p. 1, doi. 10.1371/journal.pbio.3002834
      By:
      • Hill, Verity;
      • Cleemput, Sara;
      • Pereira, James Siqueira;
      • Gifford, Robert J.;
      • Fonseca, Vagner;
      • Tegally, Houriiyah;
      • Brito, Anderson F.;
      • Ribeiro, Gabriela;
      • de Souza, Vinicius Carius;
      • Brcko, Isabela Carvalho;
      • Ribeiro, Igor Santana;
      • De Lima, Iago Trezena Tavares;
      • Slavov, Svetoslav Nanev;
      • Sampaio, Sandra Coccuzzo;
      • Elias, Maria Carolina;
      • Tran, Vi Thuy;
      • Kien, Duong Thi Hue;
      • Huynh, Tuyen;
      • Yacoub, Sophie;
      • Dieng, Idrissa
      Publication type:
      Article

    • The Importance of Entomo-Virological Investigation of Yellow Fever Virus to Strengthen Surveillance in Brazil.

      Published in:
      Tropical Medicine & Infectious Disease, 2023, v. 8, n. 6, p. 329, doi. 10.3390/tropicalmed8060329
      By:
      • Cruz, Ana Cecília Ribeiro;
      • Hernández, Leonardo Henrique Almeida;
      • Aragão, Carine Fortes;
      • da Paz, Thito Yan Bezerra;
      • da Silva, Sandro Patroca;
      • da Silva, Fábio Silva;
      • de Aquino, Ana Alice;
      • Cereja, Glennda Juscely Galvão Pereira;
      • Nascimento, Bruna Lais Sena do;
      • Rosa Junior, José Wilson;
      • Elias, Carmeci Natalina;
      • Nogueira, Cristiano Gomes;
      • Ramos, Daniel Garkauskas;
      • Fonseca, Vagner;
      • Giovanetti, Marta;
      • Alcantara, Luiz Carlos Junior;
      • Nunes, Bruno Tardelli Diniz;
      • Vasconcelos, Pedro F. da Costa;
      • Martins, Livia Carício;
      • Nunes-Neto, Joaquim Pinto
      Publication type:
      Article

    • A Study of the Incidence of Coccygeal and Lumbar Sacralisation and its Clinical Significance.

      Published in:
      2021
      By:
      • Pereira Sarmento, Jefferson;
      • Rolim Lima, Diego Furtado;
      • Franca Correia, Ana Priscila;
      • da Fonseca Conca Filho, Vagner;
      • Rodrigues Pereira, Israel;
      • de Lima Leite, Cecília;
      • Alves Brito, Samara;
      • Dantas de Lucena, Jalles
      Publication type:
      Abstract

    • Persistence of chikungunya ECSA genotype and local outbreak in an upper medium class neighborhood in Northeast Brazil.

      Published in:
      PLoS ONE, 2020, v. 15, n. 1, p. 1, doi. 10.1371/journal.pone.0226098
      By:
      • Goes de Jesus, Jaqueline;
      • da Luz Wallau, Gabriel;
      • Lima Maia, Maricelia;
      • Xavier, Joilson;
      • Oliveira Lima, Maria Aparecida;
      • Fonseca, Vagner;
      • Salgado de Abreu, Alvaro;
      • Fraga de Oliveira Tosta, Stephane;
      • Ramos do Amaral, Helineide;
      • Andrade Barbosa Lima, Italo;
      • Viana Silva, Paloma;
      • Carlos dos Santos, Daiana;
      • Sousa de Oliveira, Aline;
      • Campos de Souza, Siane;
      • Barreto Falcão, Melissa;
      • Cerqueira, Erenilde;
      • Ceschini Machado, Laís;
      • Sobral, Mariana Carolina;
      • Teodoro Rezende, Tatiana Maria;
      • Ribeiro Pereira, Mylena
      Publication type:
      Article

    • Circulation of chikungunya virus East/Central/South African lineage in Rio de Janeiro, Brazil.

      Published in:
      PLoS ONE, 2019, v. 14, n. 6, p. 1, doi. 10.1371/journal.pone.0217871
      By:
      • Xavier, Joilson;
      • Giovanetti, Marta;
      • Fonseca, Vagner;
      • Thézé, Julien;
      • Gräf, Tiago;
      • Fabri, Allison;
      • Goes de Jesus, Jaqueline;
      • Lima de Mendonça, Marcos Cesar;
      • Damasceno dos Santos Rodrigues, Cintia;
      • Mares-Guia, Maria Angélica;
      • Cardoso dos Santos, Carolina;
      • Fraga de Oliveira Tosta, Stephane;
      • Candido, Darlan;
      • Ribeiro Nogueira, Rita Maria;
      • Luiz de Abreu, André;
      • Kleber Oliveira, Wanderson;
      • Campelo de Albuquerque, Carlos F.;
      • Chieppe, Alexandre;
      • de Oliveira, Tulio;
      • Brasil, Patrícia
      Publication type:
      Article

    • Genomic characterization of SARS-CoV-2 from an indigenous reserve in Mato Grosso do Sul, Brazil.

      Published in:
      Frontiers in Public Health, 2024, p. 1, doi. 10.3389/fpubh.2023.1195779
      By:
      • Albuquerque de Oliveira, Laís;
      • Mauricio de Rezende, Izabela;
      • João Navarini, Vinicius;
      • Beutinger Marchioro, Silvana;
      • Leite Torres, Alex José;
      • Croda, Julio;
      • Garcia Croda, Mariana;
      • Maymone Gonçalves, Crhistinne Cavalheiro;
      • Xavier, Joilson;
      • de Castro, Emerson;
      • Lima, Mauricio;
      • Iani, Felipe;
      • Adelino, Talita;
      • Aburjaile, Flávia;
      • Ferraz Demarchi, Luiz Henrique;
      • Ledesma Taira, Deborah;
      • Souza Umaki Zardin, Marina Castilhos;
      • Fonseca, Vagner;
      • Giovanetti, Marta;
      • Andrews, Jason
      Publication type:
      Article

    • Fatal Oropouche Virus Infections in Nonendemic Region, Brazil, 2024.

      Published in:
      Emerging Infectious Diseases, 2024, v. 30, n. 11, p. 2370, doi. 10.3201/eid3011.241132
      By:
      • Carlos Bandeira, Antonio;
      • Mota Pereira, Felicidade;
      • Leal, Arabela;
      • P. O. Santos, Sara;
      • Claudia Barbosa, Ana;
      • Leal Souza, Marcia Sao Pedro;
      • Ribeiro de Souza, Daniele;
      • Guimaraes, Natalia;
      • Fonseca, Vagner;
      • Giovanetti, Marta;
      • Junior Alcantara, Luiz Carlos;
      • A. Lessa, André Alvarez;
      • Costa Saavedra, Ramon;
      • R. Tomé, Luiz Marcelo;
      • M. Iani, Felipe Campos;
      • Mary Barros, Rivia;
      • O. Purificação, Sandra Maria;
      • Prado de Jesus, Jaciara;
      • Rosário Fonseca, Ricardo;
      • Valença Araújo, Marcio Luis
      Publication type:
      Article

    • Evidence of Zika Virus Reinfection by Genome Diversity and Antibody Response Analysis, Brazil.

      Published in:
      Emerging Infectious Diseases, 2024, v. 30, n. 2, p. 310, doi. 10.3201/eid3002.230122
      By:
      • da Costa Castilho, Marcia;
      • Bispo de Filippis, Ana Maria;
      • Ceschini Machado, Lais;
      • Vasconcelos de Lima Calvanti, Thaise Yasmine;
      • Costa Lima, Morganna;
      • Fonseca, Vagner;
      • Giovanetti, Marta;
      • Docena, Cassia;
      • Menezes Neto, Armando;
      • Aguiar Bôtto-Menezes, Camila Helena;
      • Oliveira Kara, Edna;
      • de La Barrera, Rafael;
      • Modjarrad, Kayvon;
      • Pereira Giozza, Silvana;
      • Fernando Pereira, Gerson;
      • Junior Alcantara, Luiz Carlos;
      • Nicole Broutet, Nathalie Jeanne;
      • Amaral Calvet, Guilherme;
      • Luz Wallau, Gabriel;
      • Oliveira Franca, Rafael Freitas
      Publication type:
      Article

    • Genomic Surveillance of Monkeypox Virus, Minas Gerais, Brazil, 2022.

      Published in:
      Emerging Infectious Diseases, 2023, v. 29, n. 6, p. 1270, doi. 10.3201/eid2906.230113
      By:
      • Guimarães, Natália R.;
      • Tomé, Luiz Marcelo R.;
      • Lamounier, Ludmila O.;
      • Silva, Marcos Vinícius F.;
      • Lima, Maurício T.;
      • da Costa, Alana Vitor B.;
      • Luiz, Kelly Cristina M.;
      • de Jesus, Ronaldo;
      • de S. Trindade, Giliane;
      • Oliveira, Danilo B.;
      • da Fonseca, Flávio G.;
      • Fernandes, Ana Paula S. M.;
      • de Oliveira, Jaqueline S.;
      • Moura, Josiane B. P.;
      • Kroon, Erna G.;
      • Giovanetti, Marta;
      • Fonseca, Vagner;
      • Alcantara, Luiz;
      • Adelino, Talita Emile R.;
      • de Melo Iani, Felipe C.
      Publication type:
      Article

    • SARS-CoV-2 Spillback to Wild Coatis in Sylvatic–Urban Hotspot, Brazil .

      Published in:
      Emerging Infectious Diseases, 2023, v. 29, n. 3, p. 664, doi. 10.3201/eid2903.221339
      By:
      • Stoffella-Dutra, Ana Gabriella;
      • Hermine de Campos, Bruna;
      • Bastos e Silva, Pedro Henrique;
      • Lopes Dias, Karolina;
      • da Silva Domingos, Iago José;
      • Hemetrio, Nadja Simbera;
      • Xavier, Joilson;
      • Iani, Felipe;
      • Fonseca, Vagner;
      • Giovanetti, Marta;
      • Camilo de Oliveira, Leonardo;
      • Martins Teixeira, Mauro;
      • Portela Lobato, Zelia Ines;
      • Lage Ferreira, Helena;
      • Weis Arns, Clarice;
      • Durigon, Edison;
      • Paiva Drumond, Betânia;
      • Junior Alcantara Marcelo Pires Nogueira de Carvalho, Luiz Carlos;
      • de Souza Trindade, Giliane
      Publication type:
      Article

    • Emergence of Dengue Virus Serotype 2 Cosmopolitan Genotype, Brazil.

      Published in:
      2022
      By:
      • Giovanetti, Marta;
      • Augusto Pereira, Luiz;
      • Santiago, Gilberto A.;
      • Fonseca, Vagner;
      • García Mendoza, Maria Paquita;
      • de Oliveira, Carla;
      • de Moraes, Laise;
      • Xavier, Joilson;
      • Tosta, Stephane;
      • Fristch, Hegger;
      • de Castro Barbosa, Emerson;
      • Strazza Rodrigues, Evandra;
      • Figueroa-Romero, Dana;
      • Padilla-Rojas, Carlos;
      • Cáceres-Rey, Omar;
      • Flávia Mendonça, Ana;
      • de Bruycker Nogueira, Fernanda;
      • Venancio da Cunha, Rivaldo;
      • Bispo de Filippis, Ana Maria;
      • Freitas, Carla
      Publication type:
      journal article

    • Epidemiologic History and Genetic Diversity Origins of Chikungunya and Dengue Viruses, Paraguay.

      Published in:
      2021
      By:
      • Gräf, Tiago;
      • Vazquez, Cynthia;
      • Giovanetti, Marta;
      • de Bruycker-Nogueira, Fernanda;
      • Fonseca, Vagner;
      • Morales Claro, Ingra;
      • Goes de Jesus, Jaqueline;
      • Gómez, Andrea;
      • Xavier, Joilson;
      • Lima de Mendonça, Marcos Cesar;
      • Villalba, Shirley;
      • Torales, Juan;
      • Gamarra, Maria Liz;
      • Thézé, Julien;
      • de Filippis, Ana Maria Bispo;
      • Azevedo, Vasco;
      • de Oliveira, Tulio;
      • Franco, Leticia;
      • de Albuquerque, Carlos F. Campelo;
      • Irala, Sandra
      Publication type:
      journal article

    • Correction: Short Report: Early genomic detection of SARS-CoV-2 P.1 variant in Northeast Brazil.

      Published in:
      2022
      By:
      • Tosta, Stephane;
      • Giovanetti, Marta;
      • Brandão Nardy, Vanessa;
      • Reboredo de Oliveira da Silva, Luciana;
      • Kelly Astete Gómez, Marcela;
      • Gomes Lima, Jaqueline;
      • Wanderley Cardoso, Cristiane;
      • Oliveira Silva, Tarcisio;
      • São Pedro Leal de Souza, Marcia;
      • Presta Dias, Pedro Henrique;
      • Fonseca, Vagner;
      • de Oliveira, Tulio;
      • Lourenço, José;
      • Carlos Junior Alcantara, Luiz;
      • Pereira, Felicidade;
      • Leal, Arabela
      Publication type:
      Correction Notice

    • Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes.

      Published in:
      Bioinformatics, 2020, v. 36, n. 11, p. 3552, doi. 10.1093/bioinformatics/btaa145
      By:
      • Cleemput, Sara;
      • Dumon, Wim;
      • Fonseca, Vagner;
      • Karim, Wasim Abdool;
      • Giovanetti, Marta;
      • Alcantara, Luiz Carlos;
      • Deforche, Koen;
      • Oliveira, Tulio de
      Publication type:
      Article

    • Genome Detective: an automated system for virus identification from high-throughput sequencing data.

      Published in:
      Bioinformatics, 2019, v. 35, n. 5, p. 871, doi. 10.1093/bioinformatics/bty695
      By:
      • Vilsker, Michael;
      • Moosa, Yumna;
      • Nooij, Sam;
      • Fonseca, Vagner;
      • Ghysens, Yoika;
      • Dumon, Korneel;
      • Pauwels, Raf;
      • Alcantara, Luiz Carlos;
      • Eynden, Ewout Vanden;
      • Vandamme, Anne-Mieke;
      • Deforche, Koen;
      • Oliveira, Tulio de
      Publication type:
      Article

    • Unraveling the Complexity of Chikungunya Virus Infection Immunological and Genetic Insights in Acute and Chronic Patients.

      Published in:
      Genes, 2024, v. 15, n. 11, p. 1365, doi. 10.3390/genes15111365
      By:
      • Fritsch, Hegger;
      • Giovanetti, Marta;
      • Clemente, Luan Gaspar;
      • da Rocha Fernandes, Gabriel;
      • Fonseca, Vagner;
      • de Lima, Maricelia Maia;
      • Falcão, Melissa;
      • de Jesus, Neuza;
      • de Cerqueira, Erenilde Marques;
      • Venâncio da Cunha, Rivaldo;
      • de Oliveira Francisco, Marcos Vinicius Lima;
      • de Siqueira, Isadora Cristina;
      • de Oliveira, Carla;
      • Xavier, Joilson;
      • Ferreira, Jorge Gomes Goulart;
      • Queiroz, Fábio Ribeiro;
      • Smith, Elise;
      • Tisoncik-Go, Jennifer;
      • Van Voorhis, Wesley C.;
      • Rabinowitz, Peter M.
      Publication type:
      Article

    • Exploring Microorganisms Associated to Acute Febrile Illness and Severe Neurological Disorders of Unknown Origin: A Nanopore Metagenomics Approach.

      Published in:
      Genes, 2024, v. 15, n. 7, p. 922, doi. 10.3390/genes15070922
      By:
      • Moreno, Keldenn Melo Farias;
      • de Andrade, Virgínia Antunes;
      • de Melo Iani, Felipe Campos;
      • Fonseca, Vagner;
      • Lima, Maurício Teixeira;
      • de Castro Barbosa, Emerson;
      • Tomé, Luiz Marcelo Ribeiro;
      • Guimarães, Natália Rocha;
      • Fritsch, Hegger Machado;
      • Adelino, Talita;
      • Oliveira Fereguetti, Tatiana;
      • Aspahan, Maíra Cardoso;
      • Gamarano Barros, Tereza;
      • Alcantara, Luiz Carlos Junior;
      • Giovanetti, Marta
      Publication type:
      Article

    • Whole Genome Sequencing of SARS-CoV-2: Adapting Illumina Protocols for Quick and Accurate Outbreak Investigation during a Pandemic.

      Published in:
      Genes, 2020, v. 11, n. 8, p. 949, doi. 10.3390/genes11080949
      By:
      • Pillay, Sureshnee;
      • Giandhari, Jennifer;
      • Tegally, Houriiyah;
      • Wilkinson, Eduan;
      • Chimukangara, Benjamin;
      • Lessells, Richard;
      • Moosa, Yunus;
      • Mattison, Stacey;
      • Gazy, Inbal;
      • Fish, Maryam;
      • Singh, Lavanya;
      • Khanyile, Khulekani Sedwell;
      • San, James Emmanuel;
      • Fonseca, Vagner;
      • Giovanetti, Marta;
      • Alcantara, Luiz Carlos;
      • de Oliveira, Tulio
      Publication type:
      Article

    • Exploring Dengue Infection in a Vaccinated Individual: Preliminary Molecular Diagnosis and Sequencing Insights.

      Published in:
      Viruses (1999-4915), 2024, v. 16, n. 10, p. 1603, doi. 10.3390/v16101603
      By:
      • Adelino, Talita Émile Ribeiro;
      • Pedroso, Sílvia Helena Sousa Pietra;
      • Lima, Maurício;
      • Tomé, Luiz Marcelo Ribeiro;
      • Guimarães, Natália Rocha;
      • Fonseca, Vagner;
      • Silva, Paulo Eduardo de Souza da;
      • Moreno, Keldenn Melo Farias;
      • Silva, Ana Cândida Araújo e;
      • Pinheiro, Náthale Rodrigues;
      • Souza, Carolina Senra Alves de;
      • Alcantara, Luiz Carlos Junior;
      • Giovanetti, Marta;
      • Iani, Felipe Campos de Melo
      Publication type:
      Article

    • Insights into SARS-CoV-2 Surveillance among Prison Populations in Mato Grosso do Sul, Brazil, in 2022.

      Published in:
      Viruses (1999-4915), 2024, v. 16, n. 7, p. 1143, doi. 10.3390/v16071143
      By:
      • Ferreira da Silva, Liliane;
      • Alcantara, Luiz Carlos Junior;
      • Fonseca, Vagner;
      • Frias, Diego;
      • Umaki Zardin, Marina Castilhos Souza;
      • de Castro Lichs, Gislene Garcia;
      • Esposito, Ana Olivia Pascoto;
      • Xavier, Joilson;
      • Fritsch, Hegger;
      • Lima, Mauricio;
      • de Oliveira, Carla;
      • Castilho de Arruda, Larissa Domingues;
      • Maziero, Livia de Mello Almeida;
      • Rodrigues Barretos, Ellen Caroline;
      • Tsuha Oshiro, Paulo Eduardo;
      • Gimenes Mendes Menezes, Evellyn Fernanda;
      • de Freitas Cardoso, Lucélia;
      • Ferreira Lemos, Everton;
      • Lourenço, José;
      • de Albuquerque, Carlos F. C.
      Publication type:
      Article

    • Exploring the Genomic Dynamics of the Monkeypox Epidemic in Paraguay.

      Published in:
      Viruses (1999-4915), 2024, v. 16, n. 1, p. 83, doi. 10.3390/v16010083
      By:
      • Vazquez, Cynthia;
      • Fonseca, Vagner;
      • de la Fuente, Andrea Gomez;
      • Gonzalez, Sandra;
      • Fleitas, Fatima;
      • Lima, Mauricio;
      • Guimarães, Natália R.;
      • Iani, Felipe C. M.;
      • Rojas, Analia;
      • Alfonso, Tania;
      • Cantero, Cesar;
      • Barrios, Julio;
      • Villalba, Shirley;
      • Ortega, Maria Jose;
      • Torales, Juan;
      • Gamarra, Maria Liz;
      • Aquino, Carolina;
      • Franco, Leticia;
      • Rico, Jairo Mendez;
      • Alcantara, Luiz Carlos Junior
      Publication type:
      Article

    • A Multiplex Nanopore Sequencing Approach for the Detection of Multiple Arboviral Species.

      Published in:
      Viruses (1999-4915), 2024, v. 16, n. 1, p. 23, doi. 10.3390/v16010023
      By:
      • Xavier, Joilson;
      • Fonseca, Vagner;
      • Adelino, Talita;
      • Iani, Felipe C. M.;
      • Pereira, Glauco C.;
      • Duarte, Myrian M.;
      • Lima, Mauricio;
      • Castro, Emerson;
      • Oliveira, Carla;
      • Fritsch, Hegger;
      • Guimarães, Natalia;
      • Lamounier, Ludmila O.;
      • Barreto, Fernanda Khouri;
      • Braga de Oliveira, Camilo M. M.;
      • Maymone Gonçalves, Crhistinne C.;
      • Malta Lima, Danielle;
      • de Oliveira, Elaine C.;
      • de Castro Lichs, Gislene G.;
      • Gomes, Iago;
      • Mazaro, Janaina
      Publication type:
      Article

    • Genomic Epidemiology and Lineage Dynamics of SARS-CoV-2 in Bulgaria: Insights from a Three-Year Pandemic Analysis.

      Published in:
      Viruses (1999-4915), 2023, v. 15, n. 9, p. 1924, doi. 10.3390/v15091924
      By:
      • Giovanetti, Marta;
      • Cella, Eleonora;
      • Ivanov, Ivan;
      • Grigorova, Lyubomira;
      • Stoikov, Ivan;
      • Donchev, Deyan;
      • Dimitrova, Reneta;
      • Slavov, Svetoslav Nanev;
      • Mavian, Carla;
      • Fonseca, Vagner;
      • Scarpa, Fabio;
      • Borsetti, Alessandra;
      • Korsun, Neli;
      • Trifonova, Ivelina;
      • Dobrinov, Veselin;
      • Kantardjiev, Todor;
      • Christova, Iva;
      • Ciccozzi, Massimo;
      • Alexiev, Ivailo
      Publication type:
      Article

    • Dengue Fever Surveillance in Mato Grosso do Sul: Insights from Genomic Analysis and Implications for Public Health Strategies.

      Published in:
      Viruses (1999-4915), 2023, v. 15, n. 9, p. 1790, doi. 10.3390/v15091790
      By:
      • Castilho de Arruda, Larissa Domingues;
      • Giovanetti, Marta;
      • Fonseca, Vagner;
      • Zardin, Marina Castilhos Souza Umaki;
      • Lichs, Gislene Garcia de Castro;
      • Asato, Silvia;
      • Esposito, Ana Olivia Pascoto;
      • Tokeshi Müller, Miriam;
      • Xavier, Joilson;
      • Fritsch, Hegger;
      • Lima, Mauricio;
      • de Oliveira, Carla;
      • Santos, Elaine Vieira;
      • Maziero, Livia de Mello Almeida;
      • Frias, Danila Fernanda Rodrigues;
      • Ahad das Neves, Danielle;
      • Ferreira da Silva, Liliane;
      • Rodrigues Barretos, Ellen Caroline;
      • Tsuha Oshiro, Paulo Eduardo;
      • Modafari Goday, Bianca
      Publication type:
      Article

    • Unveiling the Impact of the Omicron Variant: Insights from Genomic Surveillance in Mato Grosso do Sul, Midwest Brazil.

      Published in:
      Viruses (1999-4915), 2023, v. 15, n. 7, p. 1604, doi. 10.3390/v15071604
      By:
      • de Mello Almeida Maziero, Lívia;
      • Giovanetti, Marta;
      • Fonseca, Vagner;
      • Zardin, Marina Castilhos Souza Umaki;
      • de Castro Lichs, Gislene Garcia;
      • de Rezende Romera, Grazielli Rocha;
      • Tsuha, Daniel Henrique;
      • Frias, Danila Fernanda Rodrigues;
      • Escandolhero, Valdir Castanho;
      • Demarchi, Luiz Henrique;
      • Domingues Castilho, Larissa;
      • Barbosa, Karine Ferreira;
      • Tebet, Danielle Galindo Martins;
      • Xavier, Joilson;
      • Fritsch, Hegger;
      • Lima, Mauricio;
      • de Oliveira, Carla;
      • Santos, Elaine Vieira;
      • Kashima, Simone;
      • Said, Rodrigo Fabiano do Carmo
      Publication type:
      Article

    • Retrospective Spatio-Temporal Dynamics of Dengue Virus 1, 2 and 4 in Paraguay.

      Published in:
      Viruses (1999-4915), 2023, v. 15, n. 6, p. 1275, doi. 10.3390/v15061275
      By:
      • Vazquez, Cynthia;
      • Alcantara, Luiz Carlos Junior;
      • Fonseca, Vagner;
      • Lima, Mauricio;
      • Xavier, Joilson;
      • Adelino, Talita;
      • Fritsch, Hegger;
      • Castro, Emerson;
      • de Oliveira, Carla;
      • Schuab, Gabriel;
      • Lima, Alex Ranieri Jerônimo;
      • Villalba, Shirley;
      • Gomez de la Fuente, Andrea;
      • Rojas, Analia;
      • Cantero, Cesar;
      • Fleitas, Fatima;
      • Aquino, Carolina;
      • Ojeda, Andrea;
      • Sequera, Guillermo;
      • Torales, Juan
      Publication type:
      Article

    • Phylogenetic Reconstructions Reveal the Circulation of a Novel Dengue Virus-1V Clade and the Persistence of a Dengue Virus-2 III Genotype in Northeast Brazil.

      Published in:
      Viruses (1999-4915), 2023, v. 15, n. 5, p. 1073, doi. 10.3390/v15051073
      By:
      • Fritsch, Hegger;
      • Moreno, Keldenn;
      • Lima, Italo Andrade Barbosa;
      • Santos, Cleiton Silva;
      • Costa, Bernardo Gratival Gouvea;
      • de Almeida, Breno Lima;
      • dos Santos, Ronald Alves;
      • Francisco, Marcos Vinicius Lima de Oliveira;
      • Sampaio, Maria Paula Souza;
      • de Lima, Maricelia Maia;
      • Pereira, Felicidade Mota;
      • Fonseca, Vagner;
      • Tosta, Stephane;
      • Xavier, Joilson;
      • de Oliveira, Carla;
      • Adelino, Talita;
      • de Mello, Arabela Leal e Silva;
      • Gräf, Tiago;
      • Alcantara, Luiz Carlos Junior;
      • Giovanetti, Marta
      Publication type:
      Article

    • Dynamics of SARS-CoV-2 Variants of Concern in Vaccination Model City in the State of Sao Paulo, Brazil.

      Published in:
      Viruses (1999-4915), 2022, v. 14, n. 10, p. N.PAG, doi. 10.3390/v14102148
      By:
      • Slavov, Svetoslav Nanev;
      • de La-Roque, Debora Glenda Lima;
      • da Costa, Pericles Natan Mendes;
      • Rodrigues, Evandra Strazza;
      • Santos, Elaine Vieira;
      • Borges, Josiane Serrano;
      • Evaristo, Mariane;
      • de Matos Maçonetto, Juliana;
      • Marques, Adriana Aparecida;
      • Milhomens, Jonathan;
      • Rós, Felipe Augusto;
      • Fonseca, Vagner;
      • Lima, Alex Ranieri Jerônimo;
      • Ribeiro, Gabriela;
      • Lima, Loyze Paola Oliveira de;
      • Garibaldi, Pedro Manuel Marques;
      • Ferreira, Natasha Nicos;
      • Moraes, Glenda Renata;
      • Marqueze, Elaine Cristina;
      • Barros, Claudia Renata dos Santos
      Publication type:
      Article

    • Retrospective Investigation in Horses with Encephalitis Reveals Unnoticed Circulation of West Nile Virus in Brazil.

      Published in:
      Viruses (1999-4915), 2022, v. 14, n. 7, p. N.PAG, doi. 10.3390/v14071540
      By:
      • Fritsch, Hegger;
      • Pereira, Felicidade Mota;
      • Costa, Erica Azevedo;
      • Fonseca, Vagner;
      • Tosta, Stephane;
      • Xavier, Joilson;
      • Levy, Flavia;
      • Oliveira, Carla de;
      • Menezes, Gabriela;
      • Lima, Jaqueline;
      • Santos, Lenisa;
      • Silva, Luciana;
      • Nardy, Vanessa;
      • Astete, Marcela Kelly Gómez;
      • Santos, Beatriz Senra Álvares da Silva;
      • Aguiar, Nágila Rocha;
      • Guedes, Maria Isabel Maldonado Coelho;
      • Faria, Guilherme Canhestro de;
      • Furtini, Ronaldo;
      • Drumond, Safira Rachel Milanez
      Publication type:
      Article

    • A computational method for the identification of Dengue, Zika and Chikungunya virus species and genotypes.

      Published in:
      PLoS Neglected Tropical Diseases, 2019, v. 13, n. 5, p. 1, doi. 10.1371/journal.pntd.0007231
      By:
      • Fonseca, Vagner;
      • Libin, Pieter J. K.;
      • Theys, Kristof;
      • Faria, Nuno R.;
      • Nunes, Marcio R. T.;
      • Restovic, Maria I.;
      • Freire, Murilo;
      • Giovanetti, Marta;
      • Cuypers, Lize;
      • Nowé, Ann;
      • Abecasis, Ana;
      • Deforche, Koen;
      • Santiago, Gilberto A.;
      • Siqueira, Isadora C. de;
      • San, Emmanuel J.;
      • Machado, Kaliane C. B.;
      • Azevedo, Vasco;
      • Filippis, Ana Maria Bispo-de;
      • Cunha, Rivaldo Venâncio da;
      • Pybus, Oliver G.
      Publication type:
      Article

    • Co-Circulation of Two Independent Clades and Persistence of CHIKV-ECSA Genotype during Epidemic Waves in Rio de Janeiro, Southeast Brazil.

      Published in:
      Pathogens, 2020, v. 9, n. 12, p. 984, doi. 10.3390/pathogens9120984
      By:
      • Fabri, Allison Araújo;
      • Rodrigues, Cintia Damasceno dos Santos;
      • Santos, Carolina Cardoso dos;
      • Chalhoub, Flávia Löwen Levy;
      • Sampaio, Simone Alves;
      • Faria, Nieli Rodrigues da Costa;
      • Torres, Maria Celeste;
      • Fonseca, Vagner;
      • Brasil, Patricia;
      • Calvet, Guilherme;
      • Alcantara, Luiz Carlos Junior;
      • Filippis, Ana Maria Bispo de;
      • Giovanetti, Marta;
      • de Bruycker-Nogueira, Fernanda
      Publication type:
      Article

    • Molecular Characterization of Salmonella Phage Wara Isolated from River Water in Brazil.

      Published in:
      Microorganisms, 2023, v. 11, n. 7, p. 1837, doi. 10.3390/microorganisms11071837
      By:
      • Romero-Calle, Danitza Xiomara;
      • Pedrosa-Silva, Francisnei;
      • Ribeiro Tomé, Luiz Marcelo;
      • Fonseca, Vagner;
      • Guimarães Benevides, Raquel;
      • de Oliveira Santos, Leila Thaise Santana;
      • de Oliveira, Tulio;
      • da Costa, Mateus Matiuzzi;
      • Alcantara, Luiz Carlos Junior;
      • de Carvalho Azevedo, Vasco Ariston;
      • Brenig, Bertram;
      • Venancio, Thiago M.;
      • Billington, Craig;
      • Góes-Neto, Aristóteles
      Publication type:
      Article

    • Yellow fever transmission in non-human primates, Bahia, Northeastern Brazil.

      Published in:
      PLoS Neglected Tropical Diseases, 2020, v. 14, n. 8, p. 1, doi. 10.1371/journal.pntd.0008405
      By:
      • Goes de Jesus, Jaqueline;
      • Gräf, Tiago;
      • Giovanetti, Marta;
      • Mares-Guia, Maria Angélica;
      • Xavier, Joilson;
      • Lima Maia, Maricelia;
      • Fonseca, Vagner;
      • Fabri, Allison;
      • dos Santos, Roberto Fonseca;
      • Mota Pereira, Felicidade;
      • Ferraz Oliveira Santos, Leandro;
      • Reboredo de Oliveira da Silva, Luciana;
      • Pereira Gusmão Maia, Zuinara;
      • Gomes Cerqueira, Jananci Xavier;
      • Thèze, Julien;
      • Abade, Leandro;
      • Cordeiro, Mirza de Carvalho Santana;
      • Torquato, Sintia Sacramento Cerqueira;
      • Santana, Eloisa Bahia;
      • de Jesus Silva, Neuza Santos
      Publication type:
      Article

    • North–south pathways, emerging variants, and high climate suitability characterize the recent spread of dengue virus serotypes 2 and 3 in the Dominican Republic.

      Published in:
      BMC Infectious Diseases, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12879-024-09658-6
      By:
      • Miguel, Isaac;
      • Feliz, Edwin P.;
      • Agramonte, Robinson;
      • Martinez, Pedro V.;
      • Vergara, Carlos;
      • Imbert, Yvonne;
      • De la Cruz, Lucia;
      • de Castro, Nurys;
      • Cedano, Odalis;
      • De la Paz, Yamilka;
      • Fonseca, Vagner;
      • Santiago, Gilberto A.;
      • Muñoz-Jordán, Jorge L.;
      • Peguero, Armando;
      • Paulino-Ramírez, Robert;
      • Grubaugh, Nathan D.;
      • de Filippis, Ana Maria Bispo;
      • Alcantara, Luiz Carlos Junior;
      • Rico, Jairo Mendez;
      • Lourenço, José
      Publication type:
      Article

    • Dengue Virus Serotype 2 Intrahost Diversity in Patients with Different Clinical Outcomes.

      Published in:
      Viruses (1999-4915), 2021, v. 13, n. 2, p. 349, doi. 10.3390/v13020349
      By:
      • Torres, Maria Celeste;
      • Lima de Mendonça, Marcos Cesar;
      • Damasceno dos Santos Rodrigues, Cintia;
      • Fonseca, Vagner;
      • Ribeiro, Mario Sergio;
      • Brandão, Ana Paula;
      • Venâncio da Cunha, Rivaldo;
      • Dias, Ana Isabel;
      • Santos Vilas Boas, Lucy;
      • Felix, Alvina Clara;
      • Alves Pereira, Maira;
      • de Oliveira Pinto, Luzia Maria;
      • Sakuntabhai, Anavaj;
      • Bispo de Filippis, Ana Maria;
      • Musso, Didier
      Publication type:
      Article

    • Detection of Multiple Human Viruses, including Mpox, Using a Wastewater Surveillance Approach in Brazil.

      Published in:
      Pathogens, 2024, v. 13, n. 7, p. 589, doi. 10.3390/pathogens13070589
      By:
      • Calabria de Araujo, Juliana;
      • Carvalho, Ana Paula Assad;
      • Leal, Cintia D.;
      • Natividade, Manuelle;
      • Borin, Marcus;
      • Guerra, Augusto;
      • Carobin, Natália;
      • Sabino, Adriano;
      • Almada, Mariana;
      • Costa, Maria Cristina M.;
      • Saia, Flavia;
      • Frutuoso, Livia V.;
      • Iani, Felipe C. M.;
      • Adelino, Talita;
      • Fonseca, Vagner;
      • Giovanetti, Marta;
      • Alcantara, Luiz Carlos Junior
      Publication type:
      Article

    • Resurgence of Dengue Virus Serotype 3 in Minas Gerais, Brazil: A Case Report.

      Published in:
      Pathogens, 2024, v. 13, n. 3, p. 202, doi. 10.3390/pathogens13030202
      By:
      • Adelino, Talita;
      • Lima, Maurício;
      • Guimarães, Natália R.;
      • Xavier, Joilson;
      • Fonseca, Vagner;
      • Tomé, Luiz Marcelo R.;
      • Pereira, Maira Alves;
      • Machado, Vanessa Ferreira;
      • Alcantara, Luiz Carlos Junior;
      • Iani, Felipe C. de Melo;
      • Giovanetti, Marta
      Publication type:
      Article

    • West Nile Virus in Brazil.

      Published in:
      Pathogens, 2021, v. 10, n. 7, p. 896, doi. 10.3390/pathogens10070896
      By:
      • Costa, Érica Azevedo;
      • Giovanetti, Marta;
      • Silva Catenacci, Lilian;
      • Fonseca, Vagner;
      • Aburjaile, Flávia Figueira;
      • Chalhoub, Flávia L. L.;
      • Xavier, Joilson;
      • Campos de Melo Iani, Felipe;
      • da Cunha e Silva Vieira, Marcelo Adriano;
      • Freitas Henriques, Danielle;
      • Medeiros, Daniele Barbosa de Almeida;
      • Guedes, Maria Isabel Maldonado Coelho;
      • Senra Álvares da Silva Santos, Beatriz;
      • Gonçalves Silva, Aila Solimar;
      • de Pino Albuquerque Maranhão, Renata;
      • da Costa Faria, Nieli Rodrigues;
      • Farinelli de Siqueira, Renata;
      • de Oliveira, Tulio;
      • Ribeiro Leite Jardim Cavalcante, Karina;
      • Oliveira de Moura, Noely Fabiana
      Publication type:
      Article

    • Tracing the evolution of the chikungunya virus in Argentina, 2016-2023: independent introductions and prominence of Latin American lineages.

      Published in:
      Emerging Microbes & Infections, 2024, v. 13, n. 1, p. 1, doi. 10.1080/22221751.2024.2362941
      By:
      • Fabbri, Cintia;
      • Giovanetti, Marta;
      • Luppo, Victoria;
      • Fonseca, Vagner;
      • Garcia, Jorge;
      • Barulli, Cintia;
      • Feroci, Mariel;
      • Perrone, Sofia;
      • Casoni, Doraldina;
      • Giamperetti, Sergio;
      • Alvarez Lopez, Maria Cristina;
      • Foussal, Maria Delia;
      • Figueredo, Mauricio;
      • Salvatierra, Karina;
      • Lejona, Sergio;
      • Diaz, Natalia Ruiz;
      • Castro, Gonzalo;
      • Bravo, Gabriela;
      • Jackel, Noelia;
      • Sen, Carina
      Publication type:
      Article

    • Genomic and eco-epidemiological investigations in Uruguay reveal local Chikungunya virus transmission dynamics during its expansion across the Americas in 2023.

      Published in:
      Emerging Microbes & Infections, 2024, v. 13, n. 1, p. 1, doi. 10.1080/22221751.2024.2332672
      By:
      • Burgueño, Analía;
      • Giovanetti, Marta;
      • Fonseca, Vagner;
      • Morel, Noelia;
      • Lima, Mauricio;
      • Castro, Emerson;
      • Guimarães, Natália R.;
      • Iani, Felipe C. M.;
      • Bormida, Victoria;
      • Cortinas, Maria Noel;
      • Ramas, Viviana;
      • Coppola, Leticia;
      • Bento, Ana I.;
      • Franco, Leticia;
      • Mendez Rico, Jairo;
      • Lourenço, José;
      • Alcantara, Luiz Carlos Junior;
      • Chiparelli, Hector
      Publication type:
      Article

    • The ongoing COVID-19 epidemic in Minas Gerais, Brazil: insights from epidemiological data and SARS-CoV-2 whole genome sequencing.

      Published in:
      Emerging Microbes & Infections, 2020, v. 9, n. 1, p. 1824, doi. 10.1080/22221751.2020.1803146
      By:
      • Xavier, Joilson;
      • Giovanetti, Marta;
      • Adelino, Talita;
      • Fonseca, Vagner;
      • Barbosa da Costa, Alana Vitor;
      • Ribeiro, Adriana Aparecida;
      • Felicio, Katlin Nascimento;
      • Duarte, Clara Guerra;
      • Ferreira Silva, Marcos Vinicius;
      • Salgado, Álvaro;
      • Lima, Mauricio Teixeira;
      • de Jesus, Ronaldo;
      • Fabri, Allison;
      • Soares Zoboli, Cristiane Franco;
      • Souza Santos, Thales Gutemberg;
      • Iani, Felipe;
      • Ciccozzi, Massimo;
      • Bispo de Filippis, Ana Maria;
      • Teixeira de Siqueira, Marilda Agudo Mendonça;
      • de Abreu, André Luiz
      Publication type:
      Article

    • Return of the founder Chikungunya virus to its place of introduction into Brazil is revealed by genomic characterization of exanthematic disease cases.

      Published in:
      2020
      By:
      • Pereira Gusmão Maia, Zuinara;
      • Mota Pereira, Felicidade;
      • do Carmo Said, Rodrigo Fabiano;
      • Fonseca, Vagner;
      • Gräf, Tiago;
      • de Bruycker Nogueira, Fernanda;
      • Brandão Nardy, Vanessa;
      • Xavier, Joilson;
      • Lima Maia, Maricelia;
      • Abreu, André L.;
      • Campelo de Albuquerque, Carlos F.;
      • Kleber Oliveira, Wanderson;
      • Croda, Julio;
      • de Filippis, Ana Maria Bispo;
      • Venancio Cunha, Rivaldo;
      • Lourenço, Jose;
      • de Oliveira, Tulio;
      • Faria, Nuno Rodrigues;
      • Junior Alcantara, Luiz Carlos;
      • Giovanetti, Marta
      Publication type:
      Letter

    • The ongoing COVID-19 epidemic in Minas Gerais, Brazil: insights from epidemiological data and SARS-CoV-2 whole genome sequencing.

      Published in:
      Emerging Microbes & Infections, 2020, v. 9, n. 1, p. 1824, doi. 10.1080/22221751.2020.1803146
      By:
      • Xavier, Joilson;
      • Giovanetti, Marta;
      • Adelino, Talita;
      • Fonseca, Vagner;
      • da Costa, Alana Vitor Barbosa;
      • Ribeiro, Adriana Aparecida;
      • Felicio, Katlin Nascimento;
      • Duarte, Clara Guerra;
      • Silva, Marcos Vinicius Ferreira;
      • Salgado, Álvaro;
      • Lima, Mauricio Teixeira;
      • de Jesus, Ronaldo;
      • Fabri, Allison;
      • Zoboli, Cristiane Franco Soares;
      • Santos, Thales Gutemberg Souza;
      • Iani, Felipe;
      • Ciccozzi, Massimo;
      • de Filippis, Ana Maria Bispo;
      • de Siqueira, Marilda Agudo Mendonça Teixeira;
      • de Abreu, André Luiz
      Publication type:
      Article

    • Return of the founder Chikungunya virus to its place of introduction into Brazil is revealed by genomic characterization of exanthematic disease cases.

      Published in:
      Emerging Microbes & Infections, 2020, v. 9, n. 1, p. 53, doi. 10.1080/22221751.2019.1701954
      By:
      • Maia, Zuinara Pereira Gusmão;
      • Pereira, Felicidade Mota;
      • do Carmo Said, Rodrigo Fabiano;
      • Fonseca, Vagner;
      • Gräf, Tiago;
      • de Bruycker Nogueira, Fernanda;
      • Nardy, Vanessa Brandão;
      • Xavier, Joilson;
      • Maia, Maricelia Lima;
      • Abreu, André L.;
      • de Albuquerque, Carlos F. Campelo;
      • Oliveira, Wanderson Kleber;
      • Croda, Julio;
      • Filippis, Ana Maria Bispo;
      • Cunha, Rivaldo Venancio;
      • Lourenço, Jose;
      • de Oliveira, Tulio;
      • Faria, Nuno Rodrigues;
      • Alcantara, Luiz Carlos Junior;
      • Giovanetti, Marta
      Publication type:
      Article

    • Increased interregional virus exchange and nucleotide diversity outline the expansion of chikungunya virus in Brazil.

      Published in:
      Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-40099-y
      By:
      • Xavier, Joilson;
      • Alcantara, Luiz Carlos Junior;
      • Fonseca, Vagner;
      • Lima, Mauricio;
      • Castro, Emerson;
      • Fritsch, Hegger;
      • Oliveira, Carla;
      • Guimarães, Natalia;
      • Adelino, Talita;
      • Evaristo, Mariane;
      • Rodrigues, Evandra S.;
      • Santos, Elaine Vieira;
      • de La-Roque, Debora;
      • de Moraes, Laise;
      • Tosta, Stephane;
      • Neto, Adelino;
      • Rosewell, Alexander;
      • Mendonça, Ana Flavia;
      • Leite, Anderson;
      • Vasconcelos, Andreza
      Publication type:
      Article

    • Current Affairs of Microbial Genome-Wide Association Studies: Approaches, Bottlenecks and Analytical Pitfalls.

      Published in:
      Frontiers in Microbiology, 2020, p. 1, doi. 10.3389/fmicb.2019.03119
      By:
      • San, James Emmanuel;
      • Baichoo, Shakuntala;
      • Kanzi, Aquillah;
      • Moosa, Yumna;
      • Lessells, Richard;
      • Fonseca, Vagner;
      • Mogaka, John;
      • Power, Robert;
      • de Oliveira, Tulio
      Publication type:
      Article

    • Molecular dynamics simulations of the SARS-CoV-2 Spike protein and variants of concern: structural evidence for convergent adaptive evolution.

      Published in:
      Journal of Biomolecular Structure & Dynamics, 2023, v. 41, n. 12, p. 5789, doi. 10.1080/07391102.2022.2097955
      By:
      • Neto, Daniel Ferreira de Lima;
      • Fonseca, Vagner;
      • Jesus, Ronaldo;
      • Dutra, Leonardo Hermes;
      • Portela, Layssa Miranda de Oliveria;
      • Freitas, Carla;
      • Fillizola, Eduardo;
      • Soares, Breno;
      • Abreu, André Luiz de;
      • Twiari, Sandeep;
      • Azevedo, Vasco;
      • Goes-Neto, Aristóteles;
      • de Medeiros, Arnaldo Correia;
      • Lopes, Norberto Peporine;
      • Zanotto, Paolo Marinho de Andrade;
      • Kato, Rodrigo Bentes
      Publication type:
      Article

    • DENV‐1 genotype V circulation during the nonepidemic period in the Northeast of São Paulo State endemic area.

      Published in:
      Journal of Medical Virology, 2024, v. 96, n. 3, p. 1, doi. 10.1002/jmv.29526
      By:
      • de La‐Roque, Debora Glenda Lima;
      • Santos, Elaine Vieira;
      • Oliveira, Renata Aparecida Machado;
      • Slavov, Svetoslav Nanev;
      • Rodrigues, Evandra S.;
      • Fonseca, Vagner;
      • Martins, Antonio Jorge;
      • Giomo, Denise Bergamaschi;
      • Torres, Paula Marilia Afonso;
      • Gentil, Danielle Cristina Dacanal;
      • Catoia, Erika Aparecida;
      • Chiquito, Natalia do Carmo;
      • Medeiros, Alessandra Paula Silva Soares;
      • Yamamoto, Aparecida Y.;
      • Passos, Luzia Márcia Romanholi;
      • Calado, Rodrigo Tocantins;
      • Barros, Claudia Renata Dos Santos;
      • Elias, Maria Carolina;
      • Sampaio, Sandra Coccuzzo;
      • Giovanetti, Marta
      Publication type:
      Article

    • Genomic monitoring unveil the early detection of the SARS‐CoV‐2 B.1.351 (beta) variant (20H/501Y.V2) in Brazil.

      Published in:
      Journal of Medical Virology, 2021, v. 93, n. 12, p. 6782, doi. 10.1002/jmv.27190
      By:
      • Slavov, Svetoslav N.;
      • Patané, José S. L.;
      • Bezerra, Rafael dos Santos;
      • Giovanetti, Marta;
      • Fonseca, Vagner;
      • Martins, Antonio J.;
      • Viala, Vincent L.;
      • Rodrigues, Evandra S.;
      • Santos, Elaine V.;
      • Barros, Claudia R. S.;
      • Marqueze, Elaine C.;
      • Santos, Bibiana;
      • Aburjaile, Flavia;
      • Neto, Raul M.;
      • Moretti, Debora B.;
      • Haddad, Ricardo;
      • Calado, Rodrigo T.;
      • Kitajima, João P.;
      • Freitas, Erika;
      • Schlesinger, David
      Publication type:
      Article

    • Genomic surveillance activities unveil the introduction of the SARS‐CoV‐2 B.1.525 variant of interest in Brazil: Case report.

      Published in:
      Journal of Medical Virology, 2021, v. 93, n. 9, p. 5523, doi. 10.1002/jmv.27086
      By:
      • Pereira, Felicidade;
      • Tosta, Stephane;
      • Lima, Maricélia M.;
      • Reboredo de Oliveira da Silva, Luciana;
      • Nardy, Vanessa B.;
      • Gómez, Marcela K. A.;
      • Lima, Jaqueline G.;
      • Fonseca, Vagner;
      • Oliveira, Tulio;
      • Lourenço, Jose;
      • Alcantara, Luiz C.;
      • Giovanetti, Marta;
      • Leal, Arabela
      Publication type:
      Article