Works by Foekens, John A.


Results: 104
    1

    Circular RNA in Chemonaive Lymph Node Negative Colon Cancer Patients.

    Published in:
    Cancers, 2021, v. 13, n. 8, p. 1903, doi. 10.3390/cancers13081903
    By:
    • van den Berg, Inge;
    • Smid, Marcel;
    • Coebergh van den Braak, Robert R. J.;
    • van Deurzen, Carolien H. M.;
    • de Weerd, Vanja;
    • Foekens, John A.;
    • IJzermans, Jan N. M.;
    • Martens, John W. M.;
    • Wilting, Saskia M.;
    • Kontos, Christos K.
    Publication type:
    Article
    2

    Estrogen receptor mutations and splice variants determined in liquid biopsies from metastatic breast cancer patients.

    Published in:
    Molecular Oncology, 2018, v. 12, n. 1, p. 48, doi. 10.1002/1878-0261.12147
    By:
    • Beije, Nick;
    • Sieuwerts, Anieta M.;
    • Kraan, Jaco;
    • Van, Ngoc M.;
    • Onstenk, Wendy;
    • Vitale, Silvia R.;
    • van der Vlugt‐Daane, Michelle;
    • Dirix, Luc Y.;
    • Brouwer, Anja;
    • Hamberg, Paul;
    • de Jongh, Felix E.;
    • Jager, Agnes;
    • Seynaeve, Caroline M.;
    • Jansen, Maurice P. H. M.;
    • Foekens, John A.;
    • Martens, John W. M.;
    • Sleijfer, Stefan
    Publication type:
    Article
    3

    4-protein signature predicting tamoxifen treatment outcome in recurrent breast cancer.

    Published in:
    Molecular Oncology, 2016, v. 10, n. 1, p. 24, doi. 10.1016/j.molonc.2015.07.004
    By:
    • De Marchi, Tommaso;
    • Liu, Ning Qing;
    • Stingl, Cristoph;
    • Timmermans, Mieke A.;
    • Smid, Marcel;
    • Look, Maxime P.;
    • Tjoa, Mila;
    • Braakman, Rene B.H.;
    • Opdam, Mark;
    • Linn, Sabine C.;
    • Sweep, Fred C.G.J.;
    • Span, Paul N.;
    • Kliffen, Mike;
    • Luider, Theo M.;
    • Foekens, John A.;
    • Martens, John W.M.;
    • Umar, Arzu
    Publication type:
    Article
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    Decreased expression of ABAT and STC2 hallmarks ER-positive inflammatory breast cancer and endocrine therapy resistance in advanced disease.

    Published in:
    Molecular Oncology, 2015, v. 9, n. 6, p. 1218, doi. 10.1016/j.molonc.2015.02.006
    By:
    • Jansen, Maurice P.H.M.;
    • Sas, Leen;
    • Sieuwerts, Anieta M.;
    • Van Cauwenberghe, Caroline;
    • Ramirez-Ardila, Diana;
    • Look, Maxime;
    • Ruigrok-Ritstier, Kirsten;
    • Finetti, Pascal;
    • Bertucci, François;
    • Timmermans, Mieke M.;
    • van Deurzen, Carolien H.M.;
    • Martens, John W.M.;
    • Simon, Iris;
    • Roepman, Paul;
    • Linn, Sabine C.;
    • van Dam, Peter;
    • Kok, Marleen;
    • Lardon, Filip;
    • Vermeulen, Peter B.;
    • Foekens, John A.
    Publication type:
    Article
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    mRNA expression profiles in circulating tumor cells of metastatic colorectal cancer patients.

    Published in:
    Molecular Oncology, 2015, v. 9, n. 4, p. 920, doi. 10.1016/j.molonc.2015.01.001
    By:
    • Mostert, Bianca;
    • Sieuwerts, Anieta M.;
    • Bolt-de Vries, Joan;
    • Kraan, Jaco;
    • Lalmahomed, Zarina;
    • van Galen, Anne;
    • van der Spoel, Petra;
    • de Weerd, Vanja;
    • Ramírez-Moreno, Raquel;
    • Smid, Marcel;
    • Verhoef, Cornelis;
    • IJzermans, Jan N.M.;
    • Gratama, Jan W.;
    • Sleijfer, Stefan;
    • Foekens, John A.;
    • Martens, John W.M.
    Publication type:
    Article
    6

    Proper genomic profiling of (BRCA1-mutated) basal-like breast carcinomas requires prior removal of tumor infiltrating lymphocytes.

    Published in:
    Molecular Oncology, 2015, v. 9, n. 4, p. 877, doi. 10.1016/j.molonc.2014.12.012
    By:
    • Massink, Maarten P.G.;
    • Kooi, Irsan E.;
    • van Mil, Saskia E.;
    • Jordanova, Ekaterina S.;
    • Ameziane, Najim;
    • Dorsman, Josephine C.;
    • van Beek, Daphne M.;
    • van der Voorn, J. Patrick;
    • Sie, Daoud;
    • Ylstra, Bauke;
    • van Deurzen, Carolien H.M.;
    • Martens, John W.;
    • Smid, Marcel;
    • Sieuwerts, Anieta M.;
    • de Weerd, Vanja;
    • Foekens, John A.;
    • van den Ouweland, Ans M.W.;
    • van Dyk, Ewald;
    • Nederlof, Petra M.;
    • Waisfisz, Quinten
    Publication type:
    Article
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    T lymphocytes facilitate brain metastasis of breast cancer by inducing Guanylate-Binding Protein 1 expression.

    Published in:
    Acta Neuropathologica, 2018, v. 135, n. 4, p. 581, doi. 10.1007/s00401-018-1806-2
    By:
    • Mustafa, Dana A. M.;
    • Pedrosa, Rute M. S. M.;
    • Smid, Marcel;
    • van der Weiden, Marcel;
    • de Weerd, Vanja;
    • Nigg, Alex L.;
    • Berrevoets, Cor;
    • Zeneyedpour, Lona;
    • Priego, Neibla;
    • Valiente, Manuel;
    • Luider, Theo M.;
    • Debets, Reno;
    • Martens, John W. M.;
    • Foekens, John A.;
    • Sieuwerts, Anieta M.;
    • Kros, Johan M.
    Publication type:
    Article
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    Corrigendum: Signatures of mutational processes in human cancer.

    Published in:
    Nature, 2013, v. 502, n. 7470, p. 258, doi. 10.1038/nature12666
    By:
    • Alexandrov, Ludmil B.;
    • Nik-Zainal, Serena;
    • Wedge, David C.;
    • Aparicio, Samuel A. J. R.;
    • Behjati, Sam;
    • Biankin, Andrew V.;
    • Bignell, Graham R.;
    • Bolli, Niccolò;
    • Borg, Ake;
    • Børresen-Dale, Anne-Lise;
    • Boyault, Sandrine;
    • Burkhardt, Birgit;
    • Butler, Adam P.;
    • Caldas, Carlos;
    • Davies, Helen R.;
    • Desmedt, Christine;
    • Eils, Roland;
    • Eyfjörd, Jórunn Erla;
    • Foekens, John A.;
    • Greaves, Mel
    Publication type:
    Article
    15

    Signatures of mutational processes in human cancer.

    Published in:
    Nature, 2013, v. 500, n. 7463, p. 415, doi. 10.1038/nature12477
    By:
    • Alexandrov, Ludmil B.;
    • Nik-Zainal, Serena;
    • Wedge, David C.;
    • Aparicio, Samuel A. J. R.;
    • Behjati, Sam;
    • Biankin, Andrew V.;
    • Bignell, Graham R.;
    • Bolli, Niccolò;
    • Borg, Ake;
    • Børresen-Dale, Anne-Lise;
    • Boyault, Sandrine;
    • Burkhardt, Birgit;
    • Butler, Adam P.;
    • Caldas, Carlos;
    • Davies, Helen R.;
    • Desmedt, Christine;
    • Eils, Roland;
    • Eyfjörd, Jórunn Erla;
    • Foekens, John A.;
    • Greaves, Mel
    Publication type:
    Article
    16

    Genes that mediate breast cancer metastasis to the brain.

    Published in:
    Nature, 2009, v. 459, n. 7249, p. 1005, doi. 10.1038/nature08021
    By:
    • Bos, Paula D.;
    • Zhang, Xiang H.-F.;
    • Nadal, Cristina;
    • Weiping Shu;
    • Gomis, Roger R.;
    • Nguyen, Don X.;
    • Minn, Andy J.;
    • van de Vijver, Marc J.;
    • Gerald, William L.;
    • Foekens, John A.;
    • Massagué, Joan
    Publication type:
    Article
    17

    Prognostic value of CD44 variant expression in primary breast cancer.

    Published in:
    International Journal of Cancer, 1999, v. 84, n. 3, p. 209, doi. 10.1002/(SICI)1097-0215(19990621)84:3<209::AID-IJC2>3.0.CO;2-9
    By:
    • Foekens, John A.;
    • Dall, Peter;
    • Klijn, Jan G.M.;
    • Skroch-Angel, Petra;
    • Claassen, Cassandra J.C.;
    • Look, Maxime P.;
    • Ponta, Helmut;
    • Van Putten, Wim L.J.;
    • Herrlich, Peter;
    • Henzen-Logmans, Sonja C.
    Publication type:
    Article
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    High prevalence of codon 213.

    Published in:
    International Journal of Cancer, 1998, v. 76, n. 3, p. 299, doi. 10.1002/(SICI)1097-0215(19980504)76:3<299::AID-IJC2>3.0.CO;2-Q
    By:
    • Schuyer, Monique;
    • Henzen-Logmans, Sonja C.;
    • Van Der Burg, Maria E. L.;
    • Fieret, Elly J. H.;
    • Klijn, Jan G. M.;
    • Foekens, John A.;
    • Berns, Els M. J. J.
    Publication type:
    Article
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    Gene length corrected trimmed mean of M-values (GeTMM) processing of RNA-seq data performs similarly in intersample analyses while improving intrasample comparisons.

    Published in:
    BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2246-7
    By:
    • Smid, Marcel;
    • Coebergh van den Braak, Robert R. J.;
    • van de Werken, Harmen J. G.;
    • van Riet, Job;
    • van Galen, Anne;
    • de Weerd, Vanja;
    • van der Vlugt-Daane, Michelle;
    • Bril, Sandra I.;
    • Lalmahomed, Zarina S.;
    • Kloosterman, Wigard P.;
    • Wilting, Saskia M.;
    • Foekens, John A.;
    • IJzermans, Jan N. M.;
    • on behalf of the MATCH study group;
    • Martens, John W. M.;
    • Sieuwerts, Anieta M.
    Publication type:
    Article
    23

    Response.

    Published in:
    2014
    By:
    • Liu, Ning Qing;
    • Smid, Marcel;
    • Martens, John W M;
    • Foekens, John A;
    • Umar, Arzu
    Publication type:
    Journal Article
    24

    Response.

    Published in:
    2014
    By:
    • Liu, Ning Qing;
    • Smid, Marcel;
    • Martens, John W.M.;
    • Foekens, John A.;
    • Umar, Arzu
    Publication type:
    Letter to the Editor
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    Comparative Proteome Analysis Revealing an 11-Protein Signature for AggressiveTriple-Negative Breast Cancer.

    Published in:
    JNCI: Journal of the National Cancer Institute, 2014, v. 106, n. 2, p. 1, doi. 10.1093/jnci/djt376
    By:
    • Ning Qing Liu;
    • Stingl, Christoph;
    • Look, Maxime P.;
    • Smid, Marcel;
    • Braakman, René B. H.;
    • De Marchi, Tommaso;
    • Sieuwerts, Anieta M.;
    • Span, Paul N.;
    • Sweep, Fred C. G. J.;
    • Linderholm, Barbro K.;
    • Mangia, Anita;
    • Paradiso, Angelo;
    • Dirix, Luc Y.;
    • Van Laere, Steven J.;
    • Luider, Theo M.;
    • Martens, John W. M.;
    • Foekens, John A.;
    • Umar, Arzu
    Publication type:
    Article
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    Uncovering the signaling landscape controlling breast cancer cell migration identifies novel metastasis driver genes.

    Published in:
    Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-11020-3
    By:
    • Koedoot, Esmee;
    • Fokkelman, Michiel;
    • Rogkoti, Vasiliki-Maria;
    • Smid, Marcel;
    • van de Sandt, Iris;
    • de Bont, Hans;
    • Pont, Chantal;
    • Klip, Janna E.;
    • Wink, Steven;
    • Timmermans, Mieke A.;
    • Wiemer, Erik A. C.;
    • Stoilov, Peter;
    • Foekens, John A.;
    • Le Dévédec, Sylvia E.;
    • Martens, John W. M.;
    • van de Water, Bob
    Publication type:
    Article
    30
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    The Prevalence of CD146 Expression in Breast Cancer Subtypes and Its Relation to Outcome.

    Published in:
    Cancers, 2018, v. 10, n. 5, p. 134, doi. 10.3390/cancers10050134
    By:
    • de Kruijff, Ingeborg E.;
    • Timmermans, Anna M.;
    • den Bakker, Michael A.;
    • Trapman-Jansen, Anita M.A.C.;
    • Foekens, Renée;
    • Meijer-Van Gelder, Marion E.;
    • Oomen-de Hoop, Esther;
    • Smid, Marcel;
    • Hollestelle, Antoinette;
    • van Deurzen, Carolien H.M.;
    • Foekens, John A.;
    • Martens, John W.M.;
    • Sleijfer, Stefan
    Publication type:
    Article
    32

    MicroRNAs as possible indicators of drug sensitivity in breast cancer cell lines.

    Published in:
    PLoS ONE, 2019, v. 14, n. 5, p. 1, doi. 10.1371/journal.pone.0216400
    By:
    • Uhr, Katharina;
    • Prager-van der Smissen, Wendy J. C.;
    • Heine, Anouk A. J.;
    • Ozturk, Bahar;
    • van Jaarsveld, Marijn T. M.;
    • Boersma, Antonius W. M.;
    • Jager, Agnes;
    • Wiemer, Erik A. C.;
    • Smid, Marcel;
    • Foekens, John A.;
    • Martens, John W. M.
    Publication type:
    Article
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    High mRNA expression of splice variant SYK short correlates with hepatic disease progression in chemonaive lymph node negative colon cancer patients.

    Published in:
    PLoS ONE, 2017, v. 12, n. 9, p. 1, doi. 10.1371/journal.pone.0185607
    By:
    • Coebergh van den Braak, Robert R. J.;
    • Sieuwerts, Anieta M.;
    • Kandimalla, Raju;
    • Lalmahomed, Zarina S.;
    • Bril, Sandra I.;
    • van Galen, Anne;
    • Smid, Marcel;
    • Biermann, Katharina;
    • van Krieken, J. Han J. M.;
    • Kloosterman, Wigard P.;
    • Foekens, John A.;
    • Goel, Ajay;
    • Martens, John W. M.;
    • IJzermans, Jan N. M.;
    • null, null
    Publication type:
    Article
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