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Integrative taxonomy of the groundwater amphipod Niphargus bihorensis Schellenberg, 1940 reveals a species-rich clade.
- Published in:
- Contributions to Zoology, 2024, v. 93, n. 4, p. 371, doi. 10.1163/18759866-bja10064
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- Publication type:
- Article
Impact of Quaternary Amazonian river dynamics on the diversification of uakari monkeys (genus Cacajao).
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- Journal of Biogeography, 2024, v. 51, n. 8, p. 1505, doi. 10.1111/jbi.14844
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- Publication type:
- Article
Whole-genome analyses converge to support the Hemirotifera hypothesis within Syndermata (Gnathifera).
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- Hydrobiologia, 2024, v. 851, n. 12/13, p. 2795, doi. 10.1007/s10750-023-05451-9
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- Publication type:
- Article
"Hidden" biodiversity: a new amphipod genus dominates epifauna in association with a mesophotic black coral forest.
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- Coral Reefs, 2024, v. 43, n. 3, p. 655, doi. 10.1007/s00338-024-02491-y
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- Publication type:
- Article
DNA taxonomy reveals high species diversity among the stygobiont genus Metastenasellus (Crustacea, Isopoda) in African groundwater.
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- Subterranean Biology, 2024, n. 48, p. 51, doi. 10.3897/subtbiol.48.113022
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- Article
Genetic breaks caused by ancient forest fragmentation: phylogeography of Staudtia kamerunensis (Myristicaceae) reveals distinct clusters in the Congo Basin.
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- Tree Genetics & Genomes, 2023, v. 19, n. 3, p. 1, doi. 10.1007/s11295-023-01601-1
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- Article
The first record of a stygobiotic form of Garra rufa (Heckel, 1843), sympatric with Garra tashanensis Mousavi-Sabet, Vatandoust, Fatemi & Eagderi, 2016 (Teleostei, Cyprinidae), in Iranian subterranean waters.
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- Subterranean Biology, 2023, n. 46, p. 97, doi. 10.3897/subtbiol.46.108396
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- Article
Chromosomal assembly of the flat oyster (Ostrea edulis L.) genome as a new genetic resource for aquaculture.
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- Evolutionary Applications, 2022, v. 15, n. 11, p. 1730, doi. 10.1111/eva.13462
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- Article
Comparative genome analysis of Vagococcus fluvialis reveals abundance of mobile genetic elements in sponge-isolated strains.
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- BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08842-9
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- Publication type:
- Article
Comparative analysis of the Mercenaria mercenaria genome provides insights into the diversity of transposable elements and immune molecules in bivalve mollusks.
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- BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-021-08262-1
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- Article
Solving the Coral Species Delimitation Conundrum.
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- Systematic Biology, 2022, v. 71, n. 2, p. 461, doi. 10.1093/sysbio/syab077
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- Publication type:
- Article
Rediscovery and redescription of Niphargus enslini Karaman, 1932 (Amphipoda, Niphargidae) in southern Germany.
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- Subterranean Biology, 2021, n. 40, p. 65, doi. 10.3897/subtbiol.40.73017
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- Article
Genome Assembly of the Cold-Tolerant Leaf Beetle Gonioctena quinquepunctata, an Important Resource for Studying Its Evolution and Reproductive Barriers between Species.
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- Genome Biology & Evolution, 2021, v. 13, n. 7, p. 1, doi. 10.1093/gbe/evab134
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- Publication type:
- Article
Overcoming uncollapsed haplotypes in long-read assemblies of non-model organisms.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04118-3
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- Article
ITS1 variation among Stichopathes cf. maldivensis (Hexacorallia: Antipatharia) whip black corals unveils conspecificity and population connectivity at local and global scales across the Indo-Pacific.
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- Coral Reefs, 2021, v. 40, n. 2, p. 521, doi. 10.1007/s00338-020-02049-8
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- Article
Stygobitic crustaceans in an anchialine cave with an archeological heritage at Vodeni Rat (Island of Sveti Klement, Hvar, Croatia).
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- International Journal of Speleology, 2021, v. 50, n. 1, p. 1, doi. 10.5038/1827-806X.50.1.2342
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- Article
HaplowebMaker and CoMa: Two web tools to delimit species using haplowebs and conspecificity matrices.
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- Methods in Ecology & Evolution, 2020, v. 11, n. 11, p. 1434, doi. 10.1111/2041-210X.13454
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- Article
How did subterranean amphipods cross the Adriatic Sea? Phylogenetic evidence for dispersal–vicariance interplay mediated by marine regression–transgression cycles.
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- Journal of Biogeography, 2020, v. 47, n. 9, p. 1875, doi. 10.1111/jbi.13875
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- Publication type:
- Article
Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs.
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- Bioinformatics, 2020, v. 36, n. 5, p. 1374, doi. 10.1093/bioinformatics/btz102
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- Publication type:
- Article
Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs.
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- Bioinformatics, 2020, v. 36, n. 2, p. 651, doi. 10.1093/bioinformatics/btz548
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- Publication type:
- Article
Computational Characterization of the mtORF of Pocilloporid Corals: Insights into Protein Structure and Function in Stylophora Lineages from Contrasting Environments.
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- Genes, 2019, v. 10, n. 5, p. 324, doi. 10.3390/genes10050324
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- Article
The hitchhiker's guide to single‐locus species delimitation.
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- Molecular Ecology Resources, 2018, v. 18, n. 6, p. 1234, doi. 10.1111/1755-0998.12908
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- Article
Sulfur Cave (Romania), an extreme environment with microbial mats in a CO<sub>2</sub>-H<sub>2</sub>S/O<sub>2</sub> gas chemocline dominated by mycobacteria.
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- International Journal of Speleology, 2018, v. 47, n. 2, p. 173, doi. 10.5038/1827-806X.47.2.2164
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- Article
Quantification of complex modular architecture in plants.
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- New Phytologist, 2018, v. 218, n. 2, p. 859, doi. 10.1111/nph.15045
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- Article
Do cryptic species matter in macroecology? Sequencing European groundwater crustaceans yields smaller ranges but does not challenge biodiversity determinants.
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- Ecography, 2018, v. 41, n. 2, p. 424, doi. 10.1111/ecog.02683
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- Publication type:
- Article
Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes.
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- PLoS Genetics, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pgen.1006777
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- Article
Species Delimitation's Coming of Age.
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- 2015
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- Publication type:
- Proceeding
Delimiting Species-Poor Data Sets using Single Molecular Markers: A Study of Barcode Gaps, Haplowebs and GMYC.
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- Systematic Biology, 2015, v. 64, n. 6, p. 900, doi. 10.1093/sysbio/syu130
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- Article
Contact genomics: scaffolding and phasing (meta)genomes using chromosome 3D physical signatures.
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- FEBS Letters, 2015, v. 589, n. 20PartA, p. 2966, doi. 10.1016/j.febslet.2015.04.034
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- Article
Against All Odds: Trehalose-6-Phosphate Synthase and Trehalase Genes in the Bdelloid Rotifer Adineta vaga Were Acquired by Horizontal Gene Transfer and Are Upregulated during Desiccation.
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- PLoS ONE, 2015, v. 10, n. 7, p. 1, doi. 10.1371/journal.pone.0131313
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- Article
Morphological Evolution of Coexisting Amphipod Species Pairs from Sulfidic Caves Suggests Competitive Interactions and Character Displacement, but No Environmental Filtering and Convergence.
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- PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0123535
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- Article
High-quality genome (re)assembly using chromosomal contact data.
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- Nature Communications, 2014, v. 5, n. 12, p. 5695, doi. 10.1038/ncomms6695
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- Article
Niphargus-Thiothrix associations may be widespread in sulphidic groundwater ecosystems: evidence from southeastern Romania.
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- Molecular Ecology, 2014, v. 23, n. 6, p. 1405, doi. 10.1111/mec.12461
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- Publication type:
- Article
Genetic diversity, clonality and connectivity in the scleractinian coral Pocillopora damicornis: a multi-scale analysis in an insular, fragmented reef system.
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- Marine Biology, 2014, v. 161, n. 3, p. 531, doi. 10.1007/s00227-013-2355-9
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- Article
Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga.
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- Nature, 2013, v. 500, n. 7463, p. 453, doi. 10.1038/nature12326
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- Publication type:
- Article
Lophelia pertusa corals from the Ionian and Barents seas share identical nuclear ITS2 and near-identical mitochondrial genome sequences.
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- BMC Research Notes, 2013, v. 6, n. 1, p. 1, doi. 10.1186/1756-0500-6-144
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- Article
Unsuspected diversity of Niphargus amphipods in the chemoautotrophic cave ecosystem of Frasassi, central Italy.
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- BMC Evolutionary Biology, 2010, v. 10, p. 171, doi. 10.1186/1471-2148-10-171
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- Publication type:
- Article
Haplowebs as a graphical tool for delimiting species: a revival of Doyle's field for recombination approach and its application to the coral genus Pocillopora in Clipperton.
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- BMC Evolutionary Biology, 2010, v. 10, p. 372, doi. 10.1186/1471-2148-10-372
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- Publication type:
- Article