Works matching AU Flicek, Paul

Results: 116

Multi-Platform Next-Generation Sequencing of the Domestic Turkey (Meleagris gallopavo): Genome Assembly and Analysis.

Published in:

PLoS Biology, 2010, v. 8, n. 9, p. 1, doi. 10.1371/journal.pbio.1000475

By:

Dalloul, Rami A.;
Long, Julie A.;
Zimin, Aleksey V.;
Aslam, Luqman;
Beal, Kathryn;
Blomberg, Le Ann;
Bouffard, Pascal;
Burt, David W.;
Crasta, Oswald;
Crooijmans, Richard P. M. A.;
Cooper, Kristal;
Coulombe, Roger A.;
De, Supriyo;
Delany, Mary E.;
Dodgson, Jerry B.;
Dong, Jennifer J.;
Evans, Clive;
Frederickson, Karin M.;
Flicek, Paul;
Florea, Liliana

Publication type:

Article

Alignment of 1000 Genomes Project reads to reference assembly GRCh38.

Published in:

GigaScience, 2017, v. 6, n. 7, p. 1, doi. 10.1093/gigascience/gix038

By:

Zheng-Bradley, Xiangqun;
Streeter, Ian;
Fairley, Susan;
Richardson, David;
Clarke, Laura;
Flicek, Paul

Publication type:

Article

Applications of the 1000 Genomes Project resources.

Published in:

Briefings in Functional Genomics, 2017, v. 16, n. 3, p. 163, doi. 10.1093/bfgp/elw027

By:

Zheng-Bradley, Xiangqun;
Flicek, Paul

Publication type:

Article

The Deep Genome Project.

Published in:

2020

By:

Lloyd, K. C. Kent;
Adams, David J.;
Baynam, Gareth;
Beaudet, Arthur L.;
Bosch, Fatima;
Boycott, Kym M.;
Braun, Robert E.;
Caulfield, Mark;
Cohn, Ronald;
Dickinson, Mary E.;
Dobbie, Michael S.;
Flenniken, Ann M.;
Flicek, Paul;
Galande, Sanjeev;
Gao, Xiang;
Grobler, Anne;
Heaney, Jason D.;
Herault, Yann;
de Angelis, Martin Hrabě;
Lupski, James R.

Publication type:

Editorial

Clustered CTCF binding is an evolutionary mechanism to maintain topologically associating domains.

Published in:

Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-019-1894-x

By:

Kentepozidou, Elissavet;
Aitken, Sarah J.;
Feig, Christine;
Stefflova, Klara;
Ibarra-Soria, Ximena;
Odom, Duncan T.;
Roller, Maša;
Flicek, Paul

Publication type:

Article

Correction to: Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome.

Published in:

2019

By:

Cheung, Warren A.;
Shao, Xiaojian;
Morin, Andréanne;
Siroux, Valérie;
Kwan, Tony;
Ge, Bing;
Aïssi, Dylan;
Chen, Lu;
Vasquez, Louella;
Allum, Fiona;
Guénard, Frédéric;
Bouzigon, Emmanuelle;
Simon, Marie-Michelle;
Boulier, Elodie;
Redensek, Adriana;
Watt, Stephen;
Datta, Avik;
Clarke, Laura;
Flicek, Paul;
Mead, Daniel

Publication type:

Correction Notice

Global identification of Smad2 and Eomesodermin targets in zebrafish identifies a conserved transcriptional network in mesendoderm and a novel role for Eomesodermin in repression of ectodermal gene expression.

Published in:

BMC Biology, 2014, v. 12, n. 1, p. 1, doi. 10.1186/s12915-014-0081-5

By:

Nelson, Andrew C.;
Cutty, Stephen J.;
Niini, Marie;
Stemple, Derek L.;
Flicek, Paul;
Houart, Corinne;
Bruce, Ashley E. E.;
Wardle, Fiona C.

Publication type:

Article

Ensembl 2013.

Published in:

Nucleic Acids Research, 2013, v. 41, p. D48, doi. 10.1093/nar/gks1236

By:

Flicek, Paul;
Ahmed, Ikhlak;
Ridwan Amode, M.;
Barrell, Daniel;
Beal, Kathryn;
Brent, Simon;
Carvalho-Silva, Denise;
Clapham, Peter;
Coates, Guy;
Fairley, Susan;
Fitzgerald, Stephen;
Gil, Laurent;
García-Girón, Carlos;
Gordon, Leo;
Hourlier, Thibaut;
Hunt, Sarah;
Juettemann, Thomas;
Kähäri, Andreas K.;
Keenan, Stephen;
Komorowska, Monika

Publication type:

Article

dbVar and DGVa: public archives for genomic structural variation.

Published in:

Nucleic Acids Research, 2013, v. 41, p. D936, doi. 10.1093/nar/gks1213

By:

Lappalainen, Ilkka;
Lopez, John;
Skipper, Lisa;
Hefferon, Timothy;
Spalding, J. Dylan;
Garner, John;
Chao Chen;
Maguire, Michael;
Corbett, Matt;
Zhou, George;
Paschall, Justin;
Ananiev, Victor;
Flicek, Paul;
Church, Deanna M.

Publication type:

Article

Ensembl 2012.

Published in:

Nucleic Acids Research, 2012, p. D84, doi. 10.1093/nar/gkr991

By:

Flicek, Paul;
Amode, M. Ridwan;
Barrell, Daniel;
Beal, Kathryn;
Brent, Simon;
Carvalho-Silva, Denise;
Clapham, Peter;
Coates, Guy;
Fairley, Susan;
Fitzgerald, Stephen;
Gil, Laurent;
Gordon, Leo;
Hendrix, Maurice;
Hourlier, Thibaut;
Johnson, Nathan;
Kähäri, Andreas K.;
Keefe, Damian;
Keenan, Stephen;
Kinsella, Rhoda;
Komorowska, Monika

Publication type:

Article

Ensembl 2011.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D800, doi. 10.1093/nar/gkq1064

By:

Flicek, Paul;
Amode, M. Ridwan;
Barrell, Daniel;
Beal, Kathryn;
Brent, Simon;
Chen, Yuan;
Clapham, Peter;
Coates, Guy;
Fairley, Susan;
Fitzgerald, Stephen;
Gordon, Leo;
Hendrix, Maurice;
Hourlier, Thibaut;
Johnson, Nathan;
Kähäri, Andreas;
Keefe, Damian;
Keenan, Stephen;
Kinsella, Rhoda;
Kokocinski, Felix;
Kulesha, Eugene

Publication type:

Article

Ensembl's 10th year.

Published in:

Nucleic Acids Research, 2010, v. 38, p. D557, doi. 10.1093/nar/gkp972

By:

Flicek, Paul;
Aken, Bronwen L.;
Ballester, Benoit;
Beal, Kathryn;
Bragin, Eugene;
Brent, Simon;
Yuan Chen;
Clapham, Peter;
Coates, Guy;
Fairley, Susan;
Fitzgerald, Stephen;
Fernandez-Banet, Julio;
Gordon, Leo;
Gräf, Stefan;
Haider, Syed;
Hammond, Martin;
Howe, Kerstin;
Jenkinson, Andrew;
Johnson, Nathan;
Kähäri, Andreas

Publication type:

Article

Strand selective generation of endo-siRNAs from the Na/phosphate transporter gene Slc34a1 in murine tissues.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 7, p. 2274, doi. 10.1093/nar/gkp088

By:

Carlile, Mark;
Swan, Daniel;
Jackson, Kelly;
Preston-Fayers, Keziah;
Ballester, Benoit;
Flicek, Paul;
Werner, Andreas

Publication type:

Article

CTCF maintains regulatory homeostasis of cancer pathways.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1484-3

By:

Aitken, Sarah J.;
Ibarra-Soria, Ximena;
Kentepozidou, Elissavet;
Flicek, Paul;
Feig, Christine;
Marioni, John C.;
Odom, Duncan T.

Publication type:

Article

A standardized framework for representation of ancestry data in genomics studies, with application to the NHGRI-EBI GWAS Catalog.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s13059-018-1396-2

By:

Morales, Joannella;
Welter, Danielle;
Bowler, Emily H.;
Cerezo, Maria;
Harris, Laura W.;
McMahon, Aoife C.;
Hall, Peggy;
Junkins, Heather A.;
Milano, Annalisa;
Hastings, Emma;
Malangone, Cinzia;
Buniello, Annalisa;
Burdett, Tony;
Flicek, Paul;
Parkinson, Helen;
Cunningham, Fiona;
Hindorff, Lucia A.;
MacArthur, Jacqueline A. L.

Publication type:

Article

Functional variation in allelic methylomes underscores a strong genetic contribution and reveals novel epigenetic alterations in the human epigenome.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1173-7

By:

Cheung, Warren A.;
Xiaojian Shao;
Morin, Andréanne;
Siroux, Valérie;
Kwan, Tony;
Bing Ge;
Aïssi, Dylan;
Lu Chen;
Vasquez, Louella;
Allum, Fiona;
Guénard, Frédéric;
Bouzigon, Emmanuelle;
Simon, Marie-Michelle;
Boulier, Elodie;
Redensek, Adriana;
Watt, Stephen;
Datta, Avik;
Clarke, Laura;
Flicek, Paul;
Mead, Daniel

Publication type:

Article

De novo assembly and genotyping of variants using colored de Bruijn graphs.

Published in:

Nature Genetics, 2012, v. 44, n. 2, p. 226, doi. 10.1038/ng.1028

By:

Iqbal, Zamin;
Caccamo, Mario;
Turner, Isaac;
Flicek, Paul;
McVean, Gil

Publication type:

Article

Public data archives for genomic structural variation.

Published in:

2010

By:

Church, Deanna M.;
Lappalainen, Ilkka;
Sneddon, Tam P.;
Hinton, Jonathan;
Maguire, Michael;
Lopez, John;
Garner, John;
Paschall, Justin;
DiCuccio, Michael;
Yaschenko, Eugene;
Scherer, Stephen W;
Feuk, Lars;
Flicek, Paul

Publication type:

Letter

SNP and haplotype mapping for genetic analysis in the rat.

Published in:

Nature Genetics, 2008, v. 40, n. 5, p. 560, doi. 10.1038/ng.124

By:

Saar, Kathrin;
Beck, Alfred;
Bihoreau, Marie-Thérèse;
Birney, Ewan;
Brocklebank, Denise;
Yuan Chen;
Cuppen, Edwin;
Demonchy, Stephanie;
Dopazo, Joaquin;
Flicek, Paul;
Foglio, Mario;
Fujiyama, Asao;
Gut, Ivo G.;
Gauguier, Dominique;
Guigo, Roderic;
Guryev, Victor;
Heinig, Matthias;
Hummel, Oliver;
Jahn, Niels;
Klages, Sven

Publication type:

Article

Population genomics of human gene expression.

Published in:

Nature Genetics, 2007, v. 39, n. 10, p. 1217, doi. 10.1038/ng2142

By:

Stranger, Barbara E.;
Nica, Alexandra C.;
Forrest, Matthew S.;
Dimas, Antigone;
Bird, Christine P.;
Beazley, Claude;
Ingle, Catherine E.;
Dunning, Mark;
Flicek, Paul;
Koller, Daphne;
Montgomery, Stephen;
Tavaré, Simon;
Deloukas, Panos;
Dermitzakis, Emmanouil T.

Publication type:

Article

Recommendations of the 2006 Human Variome Project meeting.

Published in:

Nature Genetics, 2007, v. 39, n. 4, p. 433, doi. 10.1038/ng2024

By:

Appelbe, William;
Auerbach, Arleen D.;
Becker, Kevin;
Bodmer, Walter;
Boone, D. Joe;
Boulyjenkov, Victor;
Brahmachari, Samir;
Brody, Lawrence;
Brookes, Anthony;
Brown, Alastair F.;
Byers, Peter;
Maria Cantu, Jose;
Cassiman, Jean-Jacques;
Claustres, Mireille;
Concannon, Patrick;
Cotton, Richard G. H.;
den Dunnen, Johan T.;
Flicek, Paul;
Gibbs, Richard;
Hall, Judith

Publication type:

Article

TranscriptSNPView: a genome-wide catalog of mouse coding variation.

Published in:

Nature Genetics, 2006, v. 38, n. 8, p. 853, doi. 10.1038/ng0806-853a

By:

Cunningham, Fiona;
Rios, Daniel;
Griffiths, Mark;
Smith, James;
Zemin Ning;
Cox, Tony;
Flicek, Paul;
Marin-Garcin, Pablo;
Herrero, Javier;
Rogers, Jane;
van der Weyden, Louise;
Bradley, Allan;
Birney, Ewan;
Adams, David J.

Publication type:

Article

CHD7 Targets Active Gene Enhancer Elements to Modulate ES Cell-Specific Gene Expression.

Published in:

PLoS Genetics, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pgen.1001023

By:

Schnetz, Michael P.;
Handoko, Lusy;
Akhtar-Zaidi, Batool;
Bartels, Cynthia F.;
Pereira, C. Filipe;
Fisher, Amanda G.;
Adams, David J.;
Flicek, Paul;
Crawford, Gregory E.;
LaFramboise, Thomas;
Tesar, Paul;
Chia-Lin Wei;
Scacheri, Peter C.

Publication type:

Article

Optimized design and assessment of whole genome tiling arrays.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i195, doi. 10.1093/bioinformatics/btm200

By:

Stefan Gräf;
Fiona G. G. Nielsen;
Stefan Kurtz;
Martijn A. Huynen;
Ewan Birney;
Henk Stunnenberg;
Paul Flicek

Publication type:

Article

Integrating genomic homology into gene structure prediction.

Published in:

Bioinformatics, 2001, v. 17, p. 140, doi. 10.1093/bioinformatics/17.suppl_1.s140

By:

Korf, Ian;
Flicek, Paul;
Duan, Daniel;
Brent, Michael R.

Publication type:

Article

Analysis of genome-wide knockout mouse database identifies candidate ciliopathy genes.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-19710-7

By:

Higgins, Kendall;
Moore, Bret A.;
Berberovic, Zorana;
Adissu, Hibret A.;
Eskandarian, Mohammad;
Flenniken, Ann M.;
Shao, Andy;
Imai, Denise M.;
Clary, Dave;
Lanoue, Louise;
Newbigging, Susan;
Nutter, Lauryl M. J.;
Adams, David J.;
Bosch, Fatima;
Braun, Robert E.;
Brown, Steve D. M.;
Dickinson, Mary E.;
Dobbie, Michael;
Flicek, Paul;
Gao, Xiang

Publication type:

Article

Multiple genomic solutions for local adaptation in two closely related species (sheep and goats) facing the same climatic constraints.

Published in:

Molecular Ecology, 2024, v. 33, n. 20, p. 1, doi. 10.1111/mec.17257

By:

Benjelloun, Badr;
Leempoel, Kevin;
Boyer, Frédéric;
Stucki, Sylvie;
Streeter, Ian;
Orozco‐terWengel, Pablo;
Alberto, Florian J.;
Servin, Bertrand;
Biscarini, Filippo;
Alberti, Adriana;
Engelen, Stefan;
Stella, Alessandra;
Colli, Licia;
Coissac, Eric;
Bruford, Michael W.;
Ajmone‐Marsan, Paolo;
Negrini, Riccardo;
Clarke, Laura;
Flicek, Paul;
Chikhi, Abdelkader

Publication type:

Article

Minimally Morphologically Destructive Approach for DNA Retrieval and Whole-Genome Shotgun Sequencing of Pinned Historic Dipteran Vector Species.

Published in:

Genome Biology & Evolution, 2021, v. 13, n. 10, p. 1, doi. 10.1093/gbe/evab226

By:

Korlević, Petra;
McAlister, Erica;
Mayho, Matthew;
Makunin, Alex;
Flicek, Paul;
Lawniczak, Mara K N

Publication type:

Article

Adaptation of Proteins to the Cold in Antarctic Fish: A Role for Methionine?

Published in:

Genome Biology & Evolution, 2019, v. 11, n. 1, p. 220, doi. 10.1093/gbe/evy262

By:

Berthelot, Camille;
Clarke, Jane;
Desvignes, Thomas;
Detrich, H William;
Flicek, Paul;
Peck, Lloyd S;
Peters, Michael;
Postlethwait, John H;
Clark, Melody S

Publication type:

Article

DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control.

Published in:

Nature Genetics, 2015, v. 47, n. 11, p. 1316, doi. 10.1038/ng.3413

By:

Kretzmer, Helene;
Bernhart, Stephan H;
Bergmann, Anke K;
Doose, Gero;
Jühling, Frank;
Otto, Christian;
Eberth, Sonja;
Eils, Roland;
Stadler, Peter F;
Hoffmann, Steve;
Wang, Wei;
Hovestadt, Volker;
Picelli, Simone;
Lichter, Peter;
Radlwimmer, Bernhard;
Drexler, Hans G;
MacLeod, Roderick A F;
Flicek, Paul;
Haas, Siegfried;
Hummel, Michael

Publication type:

Article

The European Genome-phenome Archive of human data consented for biomedical research.

Published in:

Nature Genetics, 2015, v. 47, n. 7, p. 692, doi. 10.1038/ng.3312

By:

Lappalainen, Ilkka;
Almeida-King, Jeff;
Kumanduri, Vasudev;
Senf, Alexander;
Spalding, John Dylan;
ur-Rehman, Saif;
Saunders, Gary;
Kandasamy, Jag;
Caccamo, Mario;
Leinonen, Rasko;
Vaughan, Brendan;
Laurent, Thomas;
Rowland, Francis;
Marin-Garcia, Pablo;
Barker, Jonathan;
Jokinen, Petteri;
Medina, Ignacio;
Paschall, Justin;
Flicek, Paul;
Torres, Angel Carreño

Publication type:

Article

Evolution of transcription factor binding in metazoans - mechanisms and functional implications.

Published in:

Nature Reviews Genetics, 2014, v. 15, n. 4, p. 221, doi. 10.1038/nrg3481

By:

Villar, Diego;
Flicek, Paul;
Odom, Duncan T.

Publication type:

Article

Correction to: The International Mouse Phenotyping Consortium (IMPC): a functional catalogue of the mammalian genome that informs conservation.

Published in:

2019

By:

Muñoz-Fuentes, Violeta;
Cacheiro, Pilar;
Meehan, Terrence F.;
Aguilar-Pimentel, Juan Antonio;
Beaudet, Arthur L.;
Brown, Steve D. M.;
Dickinson, Mary E.;
Flenniken, Ann M.;
Flicek, Paul;
Galli, Antonella;
Mashhadi, Hamed Haseli;
Heaney, Jason D.;
Hrabě de Angelis, Martin;
Kim, Jong Kyoung;
Lloyd, K. C. Kent;
McKerlie, Colin;
Morgan, Hugh;
Murray, Stephen A.;
Nutter, Lauryl M. J.;
Reilly, Patrick T.

Publication type:

Correction Notice

The International Mouse Phenotyping Consortium (IMPC): a functional catalogue of the mammalian genome that informs conservation.

Published in:

Conservation Genetics, 2018, v. 19, n. 4, p. 995, doi. 10.1007/s10592-018-1072-9

By:

Muñoz-Fuentes, Violeta;
Cacheiro, Pilar;
Meehan, Terrence F.;
Aguilar-Pimentel, Juan Antonio;
Brown, Steve D. M.;
Flenniken, Ann M.;
Flicek, Paul;
Galli, Antonella;
Mashhadi, Hamed Haseli;
Hrabě de Angelis, Martin;
Kim, Jong Kyoung;
Lloyd, K. C. Kent;
McKerlie, Colin;
Morgan, Hugh;
Murray, Stephen A.;
Nutter, Lauryl M. J.;
Reilly, Patrick T.;
Seavitt, John R.;
Seong, Je Kyung;
Simon, Michelle

Publication type:

Article

The FAANG Data Portal: Global, Open-Access, "FAIR", and Richly Validated Genotype to Phenotype Data for High-Quality Functional Annotation of Animal Genomes.

Published in:

Frontiers in Genetics, 2021, v. 11, p. 1, doi. 10.3389/fgene.2021.639238

By:

Harrison, Peter W.;
Sokolov, Alexey;
Nayak, Akshatha;
Fan, Jun;
Zerbino, Daniel;
Cochrane, Guy;
Flicek, Paul

Publication type:

Article

Accessing Livestock Resources in Ensembl.

Published in:

Frontiers in Genetics, 2021, v. 14, p. N.PAG, doi. 10.3389/fgene.2021.650228

By:

Martin, Fergal J.;
Gall, Astrid;
Szpak, Michal;
Flicek, Paul

Publication type:

Article

The Ensembl REST API: Ensembl Data for Any Language.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 143, doi. 10.1093/bioinformatics/btu613

By:

Yates, Andrew;
Beal, Kathryn;
Keenan, Stephen;
McLaren, William;
Pignatelli, Miguel;
Ritchie, Graham R. S.;
Ruffier, Magali;
Taylor, Kieron;
Vullo, Alessandro;
Flicek, Paul

Publication type:

Article

WiggleTools: parallel processing of large collections of genome-wide datasets for visualization and statistical analysis.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1008, doi. 10.1093/bioinformatics/btt737

By:

Zerbino, Daniel R.;
Johnson, Nathan;
Juettemann, Thomas;
Wilder, Steven P.;
Flicek, Paul

Publication type:

Article

Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor.

Published in:

Bioinformatics, 2010, v. 26, n. 16, p. 2069, doi. 10.1093/bioinformatics/btq330

By:

McLaren, William;
Pritchard, Bethan;
Rios, Daniel;
Yuan Chen;
Flicek, Paul;
Cunningham, Fiona

Publication type:

Article

Using long and linked reads to improve an Atlantic herring (Clupea harengus) genome assembly.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-54151-9

By:

í Kongsstovu, Sunnvør;
Mikalsen, Svein-Ole;
Homrum, Eydna í;
Jacobsen, Jan Arge;
Flicek, Paul;
Dahl, Hans Atli

Publication type:

Article

K‐mer counting and curated libraries drive efficient annotation of repeats in plant genomes.

Published in:

Plant Genome, 2021, v. 14, n. 3, p. 1, doi. 10.1002/tpg2.20143

By:

Contreras‐Moreira, Bruno;
Filippi, Carla V;
Naamati, Guy;
García Girón, Carlos;
Allen, James E;
Flicek, Paul

Publication type:

Article

LINE retrotransposons characterize mammalian tissue-specific and evolutionarily dynamic regulatory regions.

Published in:

Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02260-y

By:

Roller, Maša;
Stamper, Ericca;
Villar, Diego;
Izuogu, Osagie;
Martin, Fergal;
Redmond, Aisling M.;
Ramachanderan, Raghavendra;
Harewood, Louise;
Odom, Duncan T.;
Flicek, Paul

Publication type:

Article

Quantitative analysis of chromatin interaction changes upon a 4.3 Mb deletion at mouse 4E2.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2137-5

By:

Zepeda-Mendoza, Cinthya J.;
Mukhopadhyay, Swagatam;
Wong, Emily S.;
Harder, Nathalie;
Splinter, Erik;
de Wit, Elzo;
Eckersley-Maslin, Melanie A.;
Ried, Thomas;
Eils, Roland;
Rohr, Karl;
Mills, Alea;
de Laat, Wouter;
Flicek, Paul;
Sengupta, Anirvan M.;
Spector, David L.

Publication type:

Article

Functional signatures of evolutionarily young CTCF binding sites.

Published in:

BMC Biology, 2020, v. 18, n. 1, p. 1, doi. 10.1186/s12915-020-00863-8

By:

Azazi, Dhoyazan;
Mudge, Jonathan M.;
Odom, Duncan T.;
Flicek, Paul

Publication type:

Article

Comparative analysis of repeat content in plant genomes, large and small.

Published in:

Frontiers in Plant Science, 2023, p. 1, doi. 10.3389/fpls.2023.1103035

By:

Argentin, Joris;
Bolser, Dan;
Kersey, Paul J.;
Flicek, Paul

Publication type:

Article

An evaluation of sequencing coverage and genotyping strategies to assess neutral and adaptive diversity.

Published in:

Molecular Ecology Resources, 2019, v. 19, n. 6, p. 1497, doi. 10.1111/1755-0998.13070

By:

Benjelloun, Badr;
Boyer, Frédéric;
Streeter, Ian;
Zamani, Wahid;
Engelen, Stefan;
Alberti, Adriana;
Alberto, Florian J.;
BenBati, Mohamed;
Ibnelbachyr, Mustapha;
Chentouf, Mouad;
Bechchari, Abdelmajid;
Rezaei, Hamid R.;
Naderi, Saeid;
Stella, Alessandra;
Chikhi, Abdelkader;
Clarke, Laura;
Kijas, James;
Flicek, Paul;
Taberlet, Pierre;
Pompanon, François

Publication type:

Article

Genome variation and conserved regulation identify genomic regions responsible for strain specific phenotypes in rat.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4351-9

By:

Martín-Gálvez, David;
Dunoyer de Segonzac, Denis;
Man Chun John Ma;
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BMC Bioinformatics, 2010, v. 11, p. 238, doi. 10.1186/1471-2105-11-238

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Optimising oligonucleotide array design for ChIP-on-chip.

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BMC Bioinformatics, 2007, v. 8, p. 1, doi. 10.1186/1471-2105-8-S8-P4

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Nielsen, Fiona;
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