Found: 114

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  • Integrating genomic homology into gene structure prediction.

    Published in:
    Bioinformatics, 2001, v. 17, p. 140, doi. 10.1093/bioinformatics/17.suppl_1.s140
    By:
    • Korf, Ian;
    • Flicek, Paul;
    • Duan, Daniel;
    • Brent, Michael R.
    Publication type:
    Article

  • Addressing Beacon re-identification attacks: quantification and mitigation of privacy risks.

    Published in:
    2017
    By:
    • Raisaro, Jean Louis;
    • Tramèr, Florian;
    • Zhanglong Ji;
    • Diyue Bu;
    • Yongan Zhao;
    • Carey, Knox;
    • Lloyd, David;
    • Sofia, Heidi;
    • Baker, Dixie;
    • Flicek, Paul;
    • Shringarpure, Suyash;
    • Bustamante, Carlos;
    • Shuang Wang;
    • Xiaoqian Jiang;
    • Ohno-Machado, Lucila;
    • Haixu Tang;
    • XiaoFeng Wang;
    • Hubaux, Jean-Pierre;
    • Ji, Zhanglong;
    • Bu, Diyue
    Publication type:
    journal article

  • Co-binding by YY1 identifies the transcriptionally active, highly conserved set of CTCF-bound regions in primate genomes.

    Published in:
    Genome Biology, 2013, v. 14, n. 12, p. 465, doi. 10.1186/gb-2013-14-12-r148
    By:
    • Schwalie, Petra C.;
    • Ward, Michelle C.;
    • Cain, Carolyn E.;
    • Faure, Andre J.;
    • Gilad, Yoav;
    • Odom, Duncan T.;
    • Flicek, Paul
    Publication type:
    Article

  • Considerations for the inclusion of 2x mammalian genomes in phylogenetic analyses.

    Published in:
    Genome Biology, 2011, v. 12, n. 2, p. 1, doi. 10.1186/gb-2011-12-2-401
    By:
    • Vilella, Albert J.;
    • Birney, Ewan;
    • Flicek, Paul;
    • Herrero, Javier
    Publication type:
    Article

  • Quantitative analysis of chromatin interaction changes upon a 4.3 Mb deletion at mouse 4E2.

    Published in:
    BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2137-5
    By:
    • Zepeda-Mendoza, Cinthya J.;
    • Mukhopadhyay, Swagatam;
    • Wong, Emily S.;
    • Harder, Nathalie;
    • Splinter, Erik;
    • de Wit, Elzo;
    • Eckersley-Maslin, Melanie A.;
    • Ried, Thomas;
    • Eils, Roland;
    • Rohr, Karl;
    • Mills, Alea;
    • de Laat, Wouter;
    • Flicek, Paul;
    • Sengupta, Anirvan M.;
    • Spector, David L.
    Publication type:
    Article

  • Evolution of transcription factor binding in metazoans - mechanisms and functional implications.

    Published in:
    Nature Reviews Genetics, 2014, v. 15, n. 4, p. 221, doi. 10.1038/nrg3481
    By:
    • Villar, Diego;
    • Flicek, Paul;
    • Odom, Duncan T.
    Publication type:
    Article

  • Identification of male heterogametic sex‐determining regions on the Atlantic herring Clupea harengus genome.

    Published in:
    Journal of Fish Biology, 2020, v. 97, n. 1, p. 190, doi. 10.1111/jfb.14349
    By:
    • í Kongsstovu, Sunnvør;
    • Dahl, Hans Atli;
    • Gislason, Hannes;
    • Homrum, Eydna;
    • Jacobsen, Jan Arge;
    • Flicek, Paul;
    • Mikalsen, Svein‐Ole
    Publication type:
    Article

  • IPD-IMGT/HLA Database.

    Published in:
    Nucleic Acids Research, 2023, v. 51, n. D1, p. D1053, doi. 10.1093/nar/gkac1011
    By:
    • Barker, Dominic J;
    • Maccari, Giuseppe;
    • Georgiou, Xenia;
    • Cooper, Michael A;
    • Flicek, Paul;
    • Robinson, James;
    • Marsh, Steven G E
    Publication type:
    Article

  • Interplay of cis and trans mechanisms driving transcription factor binding and gene expression evolution.

    Published in:
    Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-01037-x
    By:
    • Wong, Emily S.;
    • Schmitt, Bianca M.;
    • Kazachenka, Anastasiya;
    • Thybert, David;
    • Redmond, Aisling;
    • Connor, Frances;
    • Rayner, Tim F.;
    • Feig, Christine;
    • Ferguson-Smith, Anne C.;
    • Marioni, John C.;
    • Odom, Duncan T.;
    • Flicek, Paul
    Publication type:
    Article

  • K‐mer counting and curated libraries drive efficient annotation of repeats in plant genomes.

    Published in:
    Plant Genome, 2021, v. 14, n. 3, p. 1, doi. 10.1002/tpg2.20143
    By:
    • Contreras‐Moreira, Bruno;
    • Filippi, Carla V;
    • Naamati, Guy;
    • García Girón, Carlos;
    • Allen, James E;
    • Flicek, Paul
    Publication type:
    Article

  • LINE retrotransposons characterize mammalian tissue-specific and evolutionarily dynamic regulatory regions.

    Published in:
    Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02260-y
    By:
    • Roller, Maša;
    • Stamper, Ericca;
    • Villar, Diego;
    • Izuogu, Osagie;
    • Martin, Fergal;
    • Redmond, Aisling M.;
    • Ramachanderan, Raghavendra;
    • Harewood, Louise;
    • Odom, Duncan T.;
    • Flicek, Paul
    Publication type:
    Article

  • The Deep Genome Project.

    Published in:
    2020
    By:
    • Lloyd, K. C. Kent;
    • Adams, David J.;
    • Baynam, Gareth;
    • Beaudet, Arthur L.;
    • Bosch, Fatima;
    • Boycott, Kym M.;
    • Braun, Robert E.;
    • Caulfield, Mark;
    • Cohn, Ronald;
    • Dickinson, Mary E.;
    • Dobbie, Michael S.;
    • Flenniken, Ann M.;
    • Flicek, Paul;
    • Galande, Sanjeev;
    • Gao, Xiang;
    • Grobler, Anne;
    • Heaney, Jason D.;
    • Herault, Yann;
    • de Angelis, Martin Hrabě;
    • Lupski, James R.
    Publication type:
    Editorial

  • Clustered CTCF binding is an evolutionary mechanism to maintain topologically associating domains.

    Published in:
    Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-019-1894-x
    By:
    • Kentepozidou, Elissavet;
    • Aitken, Sarah J.;
    • Feig, Christine;
    • Stefflova, Klara;
    • Ibarra-Soria, Ximena;
    • Odom, Duncan T.;
    • Roller, Maša;
    • Flicek, Paul
    Publication type:
    Article

  • Minimally Morphologically Destructive Approach for DNA Retrieval and Whole-Genome Shotgun Sequencing of Pinned Historic Dipteran Vector Species.

    Published in:
    Genome Biology & Evolution, 2021, v. 13, n. 10, p. 1, doi. 10.1093/gbe/evab226
    By:
    • Korlević, Petra;
    • McAlister, Erica;
    • Mayho, Matthew;
    • Makunin, Alex;
    • Flicek, Paul;
    • Lawniczak, Mara K N
    Publication type:
    Article

  • Adaptation of Proteins to the Cold in Antarctic Fish: A Role for Methionine?

    Published in:
    Genome Biology & Evolution, 2019, v. 11, n. 1, p. 220, doi. 10.1093/gbe/evy262
    By:
    • Berthelot, Camille;
    • Clarke, Jane;
    • Desvignes, Thomas;
    • Detrich, H William;
    • Flicek, Paul;
    • Peck, Lloyd S;
    • Peters, Michael;
    • Postlethwait, John H;
    • Clark, Melody S
    Publication type:
    Article

  • Consistent annotation of gene expression arrays.

    Published in:
    BMC Genomics, 2010, v. 11, p. 294, doi. 10.1186/1471-2164-11-294
    By:
    • Ballester, Benoît;
    • Johnson, Nathan;
    • Proctor, Glenn;
    • Flicek, Paul
    Publication type:
    Article

  • Ensembl variation resources.

    Published in:
    BMC Genomics, 2010, v. 11, p. 293, doi. 10.1186/1471-2164-11-293
    By:
    • Yuan Chen;
    • Cunningham, Fiona;
    • Rios, Daniel;
    • McLaren, William M.;
    • Smith, James;
    • Pritchard, Bethan;
    • Spudich, Giulietta M.;
    • Brent, Simon;
    • Kulesha, Eugene;
    • Marin-Garcia, Pablo;
    • Smedley, Damian;
    • Birney, Ewan;
    • Flicek, Paul
    Publication type:
    Article

  • Uncovering information on expression of natural antisense transcripts in Affymetrix MOE430 datasets.

    Published in:
    BMC Genomics, 2007, v. 8, p. 200, doi. 10.1186/1471-2164-8-200
    By:
    • Oeder, Sebastian;
    • Mages, Joerg;
    • Flicek, Paul;
    • Lang, Roland
    Publication type:
    Article

  • eHive: An artificial Intelligence workflow systemfor genomic analysis.

    Published in:
    BMC Bioinformatics, 2010, v. 11, p. 240, doi. 10.1186/1471-2105-11-240
    By:
    • Severin, Jessica;
    • Beal, Kathryn;
    • Vilella, Albert J.;
    • Fitzgerald, Stephen;
    • Schuster, Michael;
    • Gordon, Leo;
    • Ureta-Vidal, Abel;
    • Flicek, Paul;
    • Herrero, Javier
    Publication type:
    Article

  • A database and API for variation, densegenotyping and resequencing data.

    Published in:
    BMC Bioinformatics, 2010, v. 11, p. 238, doi. 10.1186/1471-2105-11-238
    By:
    • Rios, Daniel;
    • McLaren, William M.;
    • Yuan Chen;
    • Birney, Ewan;
    • Stabenau, Arne;
    • Flicek, Paul;
    • Cunningham, Fiona
    Publication type:
    Article

  • An integrated map of genetic variation from 1,092 human genomes.

    Published in:
    Nature, 2012, v. 491, n. 7422, p. 56, doi. 10.1038/nature11632
    By:
    • McVean, Gil A.;
    • Altshuler (Co-Chair), David M.;
    • Durbin (Co-Chair), Richard M.;
    • Abecasis, Gonçalo R.;
    • Bentley, David R.;
    • Chakravarti, Aravinda;
    • Clark, Andrew G.;
    • Donnelly, Peter;
    • Eichler, Evan E.;
    • Flicek, Paul;
    • Gabriel, Stacey B.;
    • Gibbs, Richard A.;
    • Green, Eric D.;
    • Hurles, Matthew E.;
    • Knoppers, Bartha M.;
    • Korbel, Jan O.;
    • Lander, Eric S.;
    • Lee, Charles;
    • Lehrach, Hans;
    • Mardis, Elaine R.
    Publication type:
    Article

  • Journal club.

    Published in:
    Nature, 2010, v. 463, n. 7282, p. 713, doi. 10.1038/463713e
    By:
    • Flicek, Paul
    Publication type:
    Article

  • The Evolutionary Fates of a Large Segmental Duplication in Mouse.

    Published in:
    Genetics, 2016, v. 204, n. 1, p. 267, doi. 10.1534/genetics.116.191007
    By:
    • Morgan, Andrew P.;
    • Holt, J. Matthew;
    • McMullan, Rachel C.;
    • Bell, Timothy A.;
    • Clayshulte, Amelia M.-F.;
    • Didion, John P.;
    • Yadgary, Liran;
    • Thybert, David;
    • Odom, Duncan T.;
    • Flicek, Paul;
    • McMillan, Leonard;
    • Villena, Fernando Pardo-Manuel de
    Publication type:
    Article

  • Ensembl variation resources.

    Published in:
    Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay119
    By:
    • Hunt, Sarah E;
    • McLaren, William;
    • Gil, Laurent;
    • Thormann, Anja;
    • Schuilenburg, Helen;
    • Sheppard, Dan;
    • Parton, Andrew;
    • Armean, Irina M;
    • Trevanion, Stephen J;
    • Flicek, Paul;
    • Cunningham, Fiona
    Publication type:
    Article

  • Ensembl core software resources: storage and programmatic access for DNA sequence and genome annotation.

    Published in:
    Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax020
    By:
    • Ruffier, Magali;
    • Kähäri, Andreas;
    • Komorowska, Monika;
    • Keenan, Stephen;
    • Laird, Matthew;
    • Longden, Ian;
    • Proctor, Glenn;
    • Searle, Steve;
    • Staines, Daniel;
    • Taylor, Kieron;
    • Vullo, Alessandro;
    • Yates, Andrew;
    • Zerbino, Daniel;
    • Flicek, Paul
    Publication type:
    Article

  • ncRNA orthologies in the vertebrate lineage.

    Published in:
    Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/bav127
    By:
    • Pignatelli, Miguel;
    • Vilella, Albert J.;
    • Muffato, Matthieu;
    • Gordon, Leo;
    • White, Simon;
    • Flicek, Paul;
    • Herrero, Javier
    Publication type:
    Article

  • Ensembl comparative genomics resources.

    Published in:
    Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/bav096
    By:
    • Herrero, Javier;
    • Muffato, Matthieu;
    • Beal, Kathryn;
    • Fitzgerald, Stephen;
    • Gordon, Leo;
    • Pignatelli, Miguel;
    • Vilella, Albert J.;
    • Searle, Stephen M. J.;
    • Amode, Ridwan;
    • Brent, Simon;
    • Spooner, William;
    • Kulesha, Eugene;
    • Yates, Andrew;
    • Flicek, Paul
    Publication type:
    Article

  • Ensembl BioMarts: a hub for data retrieval across taxonomic space.

    Published in:
    Database: The Journal of Biological Databases & Curation, 2011, v. 2011, p. 1, doi. 10.1093/database/bar030
    By:
    • Kinsella, Rhoda J.;
    • Kähäri, Andreas;
    • Haider, Syed;
    • Zamora, Jorge;
    • Proctor, Glenn;
    • Spudich, Giulietta;
    • Almeida-King, Jeff;
    • Staines, Daniel;
    • Derwent, Paul;
    • Kerhornou, Arnaud;
    • Kersey, Paul;
    • Flicek, Paul
    Publication type:
    Article

  • Finding and sharing: new approaches to registries of databases and services for the biomedical sciences.

    Published in:
    Database: The Journal of Biological Databases & Curation, 2010, v. 2010, p. 1, doi. 10.1093/database/baq014
    By:
    • Smedley, Damian;
    • Schofield, Paul;
    • Chao-Kung Chen;
    • Aidinis, Vassilis;
    • Ainali, Chrysanthi;
    • Bard, Jonathan;
    • Balling, Rudi;
    • Birney, Ewan;
    • Blake, Andrew;
    • Bongcam-Rudloff, Erik;
    • Brookes, Anthony J.;
    • Cesareni, Gianni;
    • Chandras, Christina;
    • Eppig, Janan;
    • Flicek, Paul;
    • Gkoutos, Georgios;
    • Greenaway, Simon;
    • Gruenberger, Michael;
    • Hériché, Jean-Karim;
    • Lyall, Andrew
    Publication type:
    Article

  • DNA methylome analysis in Burkitt and follicular lymphomas identifies differentially methylated regions linked to somatic mutation and transcriptional control.

    Published in:
    Nature Genetics, 2015, v. 47, n. 11, p. 1316, doi. 10.1038/ng.3413
    By:
    • Kretzmer, Helene;
    • Bernhart, Stephan H;
    • Bergmann, Anke K;
    • Doose, Gero;
    • Jühling, Frank;
    • Otto, Christian;
    • Eberth, Sonja;
    • Eils, Roland;
    • Stadler, Peter F;
    • Hoffmann, Steve;
    • Wang, Wei;
    • Hovestadt, Volker;
    • Picelli, Simone;
    • Lichter, Peter;
    • Radlwimmer, Bernhard;
    • Drexler, Hans G;
    • MacLeod, Roderick A F;
    • Flicek, Paul;
    • Haas, Siegfried;
    • Hummel, Michael
    Publication type:
    Article

  • The European Genome-phenome Archive of human data consented for biomedical research.

    Published in:
    Nature Genetics, 2015, v. 47, n. 7, p. 692, doi. 10.1038/ng.3312
    By:
    • Lappalainen, Ilkka;
    • Almeida-King, Jeff;
    • Kumanduri, Vasudev;
    • Senf, Alexander;
    • Spalding, John Dylan;
    • ur-Rehman, Saif;
    • Saunders, Gary;
    • Kandasamy, Jag;
    • Caccamo, Mario;
    • Leinonen, Rasko;
    • Vaughan, Brendan;
    • Laurent, Thomas;
    • Rowland, Francis;
    • Marin-Garcia, Pablo;
    • Barker, Jonathan;
    • Jokinen, Petteri;
    • Medina, Ignacio;
    • Paschall, Justin;
    • Flicek, Paul;
    • Torres, Angel Carreño
    Publication type:
    Article

  • De novo assembly and genotyping of variants using colored de Bruijn graphs.

    Published in:
    Nature Genetics, 2012, v. 44, n. 2, p. 226, doi. 10.1038/ng.1028
    By:
    • Iqbal, Zamin;
    • Caccamo, Mario;
    • Turner, Isaac;
    • Flicek, Paul;
    • McVean, Gil
    Publication type:
    Article

  • Public data archives for genomic structural variation.

    Published in:
    2010
    By:
    • Church, Deanna M.;
    • Lappalainen, Ilkka;
    • Sneddon, Tam P.;
    • Hinton, Jonathan;
    • Maguire, Michael;
    • Lopez, John;
    • Garner, John;
    • Paschall, Justin;
    • DiCuccio, Michael;
    • Yaschenko, Eugene;
    • Scherer, Stephen W;
    • Feuk, Lars;
    • Flicek, Paul
    Publication type:
    Letter

  • SNP and haplotype mapping for genetic analysis in the rat.

    Published in:
    Nature Genetics, 2008, v. 40, n. 5, p. 560, doi. 10.1038/ng.124
    By:
    • Saar, Kathrin;
    • Beck, Alfred;
    • Bihoreau, Marie-Thérèse;
    • Birney, Ewan;
    • Brocklebank, Denise;
    • Yuan Chen;
    • Cuppen, Edwin;
    • Demonchy, Stephanie;
    • Dopazo, Joaquin;
    • Flicek, Paul;
    • Foglio, Mario;
    • Fujiyama, Asao;
    • Gut, Ivo G.;
    • Gauguier, Dominique;
    • Guigo, Roderic;
    • Guryev, Victor;
    • Heinig, Matthias;
    • Hummel, Oliver;
    • Jahn, Niels;
    • Klages, Sven
    Publication type:
    Article

  • Population genomics of human gene expression.

    Published in:
    Nature Genetics, 2007, v. 39, n. 10, p. 1217, doi. 10.1038/ng2142
    By:
    • Stranger, Barbara E.;
    • Nica, Alexandra C.;
    • Forrest, Matthew S.;
    • Dimas, Antigone;
    • Bird, Christine P.;
    • Beazley, Claude;
    • Ingle, Catherine E.;
    • Dunning, Mark;
    • Flicek, Paul;
    • Koller, Daphne;
    • Montgomery, Stephen;
    • Tavaré, Simon;
    • Deloukas, Panos;
    • Dermitzakis, Emmanouil T.
    Publication type:
    Article

  • Recommendations of the 2006 Human Variome Project meeting.

    Published in:
    Nature Genetics, 2007, v. 39, n. 4, p. 433, doi. 10.1038/ng2024
    By:
    • Appelbe, William;
    • Auerbach, Arleen D.;
    • Becker, Kevin;
    • Bodmer, Walter;
    • Boone, D. Joe;
    • Boulyjenkov, Victor;
    • Brahmachari, Samir;
    • Brody, Lawrence;
    • Brookes, Anthony;
    • Brown, Alastair F.;
    • Byers, Peter;
    • Maria Cantu, Jose;
    • Cassiman, Jean-Jacques;
    • Claustres, Mireille;
    • Concannon, Patrick;
    • Cotton, Richard G. H.;
    • den Dunnen, Johan T.;
    • Flicek, Paul;
    • Gibbs, Richard;
    • Hall, Judith
    Publication type:
    Article

  • TranscriptSNPView: a genome-wide catalog of mouse coding variation.

    Published in:
    Nature Genetics, 2006, v. 38, n. 8, p. 853, doi. 10.1038/ng0806-853a
    By:
    • Cunningham, Fiona;
    • Rios, Daniel;
    • Griffiths, Mark;
    • Smith, James;
    • Zemin Ning;
    • Cox, Tony;
    • Flicek, Paul;
    • Marin-Garcin, Pablo;
    • Herrero, Javier;
    • Rogers, Jane;
    • van der Weyden, Louise;
    • Bradley, Allan;
    • Birney, Ewan;
    • Adams, David J.
    Publication type:
    Article

  • Functional signatures of evolutionarily young CTCF binding sites.

    Published in:
    BMC Biology, 2020, v. 18, n. 1, p. 1, doi. 10.1186/s12915-020-00863-8
    By:
    • Azazi, Dhoyazan;
    • Mudge, Jonathan M.;
    • Odom, Duncan T.;
    • Flicek, Paul
    Publication type:
    Article

  • CHD7 Targets Active Gene Enhancer Elements to Modulate ES Cell-Specific Gene Expression.

    Published in:
    PLoS Genetics, 2010, v. 6, n. 7, p. 1, doi. 10.1371/journal.pgen.1001023
    By:
    • Schnetz, Michael P.;
    • Handoko, Lusy;
    • Akhtar-Zaidi, Batool;
    • Bartels, Cynthia F.;
    • Pereira, C. Filipe;
    • Fisher, Amanda G.;
    • Adams, David J.;
    • Flicek, Paul;
    • Crawford, Gregory E.;
    • LaFramboise, Thomas;
    • Tesar, Paul;
    • Chia-Lin Wei;
    • Scacheri, Peter C.
    Publication type:
    Article

  • LaGomiCs--Lagomorph Genomics Consortium: An International Collaborative Effort for Sequencing the Genomes of an Entire Mammalian Order.

    Published in:
    2016
    By:
    • Fontanesi, Luca;
    • Di Palma, Federica;
    • Flicek, Paul;
    • Smith, Andrew T.;
    • Thulin, Carl-Gustaf;
    • Alves, Paulo C.
    Publication type:
    Opinion

  • The FAANG Data Portal: Global, Open-Access, "FAIR", and Richly Validated Genotype to Phenotype Data for High-Quality Functional Annotation of Animal Genomes.

    Published in:
    Frontiers in Genetics, 2021, v. 11, p. 1, doi. 10.3389/fgene.2021.639238
    By:
    • Harrison, Peter W.;
    • Sokolov, Alexey;
    • Nayak, Akshatha;
    • Fan, Jun;
    • Zerbino, Daniel;
    • Cochrane, Guy;
    • Flicek, Paul
    Publication type:
    Article

  • Accessing Livestock Resources in Ensembl.

    Published in:
    Frontiers in Genetics, 2021, v. 14, p. N.PAG, doi. 10.3389/fgene.2021.650228
    By:
    • Martin, Fergal J.;
    • Gall, Astrid;
    • Szpak, Michal;
    • Flicek, Paul
    Publication type:
    Article

  • Haplosaurus computes protein haplotypes for use in precision drug design.

    Published in:
    Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-06542-1
    By:
    • Spooner, William;
    • McLaren, William;
    • Slidel, Timothy;
    • Finch, Donna K.;
    • Butler, Robin;
    • Campbell, Jamie;
    • Eghobamien, Laura;
    • Rider, David;
    • Kiefer, Christine Mione;
    • Robinson, Matthew J.;
    • Hardman, Colin;
    • Cunningham, Fiona;
    • Vaughan, Tristan;
    • Flicek, Paul;
    • Huntington, Catherine Chaillan
    Publication type:
    Article

  • Characterizing genetic variants for clinical action.

    Published in:
    American Journal of Medical Genetics. Part C: Seminars in Medical Genetics, 2014, v. 166C, n. 1, p. 93, doi. 10.1002/ajmg.c.31386
    By:
    • Ramos, Erin M.;
    • Din‐Lovinescu, Corina;
    • Berg, Jonathan S.;
    • Brooks, Lisa D.;
    • Duncanson, Audrey;
    • Dunn, Michael;
    • Good, Peter;
    • Hubbard, Tim J.P.;
    • Jarvik, Gail P.;
    • O'Donnell, Christopher;
    • Sherry, Stephen T.;
    • Aronson, Naomi;
    • Biesecker, Leslie G.;
    • Blumberg, Bruce;
    • Calonge, Ned;
    • Colhoun, Helen M.;
    • Epstein, Robert S.;
    • Flicek, Paul;
    • Gordon, Erynn S.;
    • Green, Eric D.
    Publication type:
    Article

  • Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories.

    Published in:
    Nature Biotechnology, 2013, v. 31, n. 11, p. 1015, doi. 10.1038/nbt.2702
    By:
    • 't Hoen, Peter A C;
    • Friedländer, Marc R;
    • Almlöf, Jonas;
    • Sammeth, Michael;
    • Pulyakhina, Irina;
    • Anvar, Seyed Yahya;
    • Laros, Jeroen F J;
    • Buermans, Henk P J;
    • Karlberg, Olof;
    • Brännvall, Mathias;
    • van Ommen, Gert-Jan B;
    • Estivill, Xavier;
    • Guigó, Roderic;
    • Syvänen, Ann-Christine;
    • Gut, Ivo G;
    • Dermitzakis, Emmanouil T;
    • Antonarakis, Stylianos E;
    • Brazma, Alvis;
    • Flicek, Paul;
    • Schreiber, Stefan
    Publication type:
    Article

  • BLUEPRINT to decode the epigenetic signature written in blood.

    Published in:
    Nature Biotechnology, 2012, v. 30, n. 3, p. 224, doi. 10.1038/nbt.2153
    By:
    • Adams, David;
    • Altucci, Lucia;
    • Antonarakis, Stylianos E;
    • Ballesteros, Juan;
    • Beck, Stephan;
    • Bird, Adrian;
    • Bock, Christoph;
    • Boehm, Bernhard;
    • Campo, Elias;
    • Caricasole, Andrea;
    • Dahl, Fredrik;
    • Dermitzakis, Emmanouil T;
    • Enver, Tariq;
    • Esteller, Manel;
    • Estivill, Xavier;
    • Ferguson-Smith, Anne;
    • Fitzgibbon, Jude;
    • Flicek, Paul;
    • Giehl, Claudia;
    • Graf, Thomas
    Publication type:
    Article

  • A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis.

    Published in:
    Nature Biotechnology, 2008, v. 26, n. 7, p. 779, doi. 10.1038/nbt1414
    By:
    • Down, Thomas A;
    • Rakyan, Vardhman K;
    • Turner, Daniel J;
    • Flicek, Paul;
    • Li, Heng;
    • Kulesha, Eugene;
    • Gräf, Stefan;
    • Johnson, Nathan;
    • Herrero, Javier;
    • Tomazou, Eleni M;
    • Thorne, Natalie P;
    • Bäckdahl, Liselotte;
    • Herberth, Marlis;
    • Howe, Kevin L;
    • Jackson, David K;
    • Miretti, Marcos M;
    • Marioni, John C;
    • Birney, Ewan;
    • Hubbard, Tim J P;
    • Durbin, Richard
    Publication type:
    Article

  • Optimising oligonucleotide array design for ChIP-on-chip.

    Published in:
    BMC Bioinformatics, 2007, v. 8, p. 1, doi. 10.1186/1471-2105-8-S8-P4
    By:
    • Nielsen, Fiona;
    • Graef, Stefan;
    • Xinmin Zhang;
    • Kurtz, Stefan;
    • Denissov, Sergei;
    • Green, Roland;
    • Birney, Ewan;
    • Flicek, Paul;
    • Huynen, Martijn;
    • Stunnenberg, Henk
    Publication type:
    Article

  • Gene finding in the chicken genome.

    Published in:
    BMC Bioinformatics, 2005, v. 6, p. 131, doi. 10.1186/1471-2105-6-131
    By:
    • Eyras, Eduardo;
    • Reymond, Alexandre;
    • Castelo, Robert;
    • Bye, Jacqueline M.;
    • Camara, Francisco;
    • Flicek, Paul;
    • Huckle, Elizabeth J.;
    • Parra, Genis;
    • Shteynberg, David D.;
    • Wyss, Carine;
    • Rogers, Jane;
    • Antonarakis, Stylianos E.;
    • Birney, Ewan;
    • Guigo, Roderic;
    • Brent, Michael R.
    Publication type:
    Article

  • Accessing data from the International Mouse Phenotyping Consortium: state of the art and future plans.

    Published in:
    Mammalian Genome, 2012, v. 23, n. 9/10, p. 641, doi. 10.1007/s00335-012-9428-9
    By:
    • Mallon, Ann-Marie;
    • Iyer, Vivek;
    • Melvin, David;
    • Morgan, Hugh;
    • Parkinson, Helen;
    • Brown, Steve;
    • Flicek, Paul;
    • Skarnes, William
    Publication type:
    Article