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Computational design and molecular dynamics simulations suggest the mode of substrate binding in ceramide synthases.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38047-x
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- Article
Computationally designed hyperactive Cas9 enzymes.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30598-9
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- Article
Mutational scanning reveals the determinants of protein insertion and association energetics in the plasma membrane.
- Published in:
- eLife, 2016, p. 1, doi. 10.7554/eLife.12125
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- Publication type:
- Article
Computationally designed dual-color MRI reporters for noninvasive imaging of transgene expression.
- Published in:
- Nature Biotechnology, 2022, v. 40, n. 7, p. 1143, doi. 10.1038/s41587-021-01162-5
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- Article
Optimization of affinity, specificity and function of designed influenza inhibitors using deep sequencing.
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- Nature Biotechnology, 2012, v. 30, n. 6, p. 543, doi. 10.1038/nbt.2214
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- Publication type:
- Article
High-resolution mapping of protein sequence-function relationships.
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- Nature Methods, 2010, v. 7, n. 9, p. 741, doi. 10.1038/nmeth.1492
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- Article
PROSS 2: a new server for the design of stable and highly expressed protein variants.
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- Bioinformatics, 2021, v. 37, n. 1, p. 123, doi. 10.1093/bioinformatics/btaa1071
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- Publication type:
- Article
Allosteric regulation of the 20S proteasome by the Catalytic Core Regulators (CCRs) family.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38404-w
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- Publication type:
- Article
Designed active-site library reveals thousands of functional GFP variants.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38099-z
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- Publication type:
- Article
RosettaScripts: A Scripting Language Interface to the Rosetta Macromolecular Modeling Suite.
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- PLoS ONE, 2011, v. 6, n. 6, p. 1, doi. 10.1371/journal.pone.0020161
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- Article
AbDesign: An algorithm for combinatorial backbone design guided by natural conformations and sequences.
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- Proteins, 2015, v. 83, n. 8, p. 1385, doi. 10.1002/prot.24779
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- Article
Community-wide evaluation of methods for predicting the effect of mutations on protein-protein interactions.
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- Proteins, 2013, v. 81, n. 11, p. 1980, doi. 10.1002/prot.24356
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- Article
Computational protein design suggests that human PCNA-partner interactions are not optimized for affinity.
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- Proteins, 2013, v. 81, n. 2, p. 341, doi. 10.1002/prot.24190
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- Article
Rosetta in CAPRI rounds 13-19.
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- Proteins, 2010, v. 78, n. 15, p. 3212, doi. 10.1002/prot.22784
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- Article
RosettaDock in CAPRI rounds 6-12.
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- Proteins, 2007, v. 69, n. 4, p. 758, doi. 10.1002/prot.21684
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- Article
Enhancing the Thermal and Kinetic Stability of Ketol-Acid Reductoisomerase, a Central Catalyst of a Cell-Free Enzyme Cascade for the Manufacture of Platform Chemicals.
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- Applied Biosciences, 2022, v. 1, n. 2, p. 163, doi. 10.3390/applbiosci1020011
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- Publication type:
- Article
De novo- designed transmembrane domains tune engineered receptor functions.
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- eLife, 2022, p. 1
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- Publication type:
- Article
Ultrahigh specificity in a network of computationally designed protein-interaction pairs.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07722-9
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- Publication type:
- Article
Design of a stable human acid‐β‐glucosidase: towards improved Gaucher disease therapy and mutation classification.
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- FEBS Journal, 2023, v. 290, n. 13, p. 3383, doi. 10.1111/febs.16758
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- Article
Obituary: Dan S Tawfik (1955–2021).
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- 2021
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- Obituary
The C-terminal tail of CSNAP attenuates the CSN complex.
- Published in:
- Life Science Alliance, 2023, v. 6, n. 10, p. 1, doi. 10.26508/lsa.202201634
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- Article
Direct‐MS analysis of antibody‐antigen complexes.
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- Proteomics, 2021, v. 21, n. 21, p. 1, doi. 10.1002/pmic.202000300
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- Article
Correction: Optimizing antibody affinity and stability by the automated design of the variable light-heavy chain interfaces.
- Published in:
- 2020
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- Publication type:
- Correction Notice
pANT: A Method for the Pairwise Assessment of Nonfunctionalization Times of Processed Pseudogenes.
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- Molecular Biology & Evolution, 2003, v. 20, n. 11, p. 1876, doi. 10.1093/molbev/msg202
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- Article
Highly Specific Monoclonal Antibody Targeting the Botulinum Neurotoxin Type E Exposed SNAP-25 Neoepitope.
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- Antibodies (2073-4468), 2022, v. 11, n. 1, p. 21, doi. 10.3390/antib11010021
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- Publication type:
- Article
Stabilization of the SARS-CoV-2 receptor binding domain by protein core redesign and deep mutational scanning.
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- PEDS: Protein Engineering, Design & Selection, 2022, v. 35, p. 1, doi. 10.1093/protein/gzac002
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- Publication type:
- Article
Improved antibody-based ricin neutralization by affinity maturation is correlated with slower off-rate values.
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- PEDS: Protein Engineering, Design & Selection, 2017, v. 30, n. 9, p. 611, doi. 10.1093/protein/gzx028
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- Article
Overcoming an optimization plateau in the directed evolution of highly efficient nerve agent bioscavengers.
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- PEDS: Protein Engineering, Design & Selection, 2017, v. 30, n. 4, p. 333, doi. 10.1093/protein/gzx003
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- Publication type:
- Article
Co-evolving residues in membrane proteins.
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- Bioinformatics, 2007, v. 23, n. 24, p. 3312, doi. 10.1093/bioinformatics/btm515
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- Publication type:
- Article
Prediction and simulation of motion in pairs of transmembrane α-helices.
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- Bioinformatics, 2007, v. 23, n. 2, p. e212, doi. 10.1093/bioinformatics/btl325
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- Publication type:
- Article
Intrinsically disordered C-terminal segments of voltage-activated potassium channels: a possible fishing rod-like mechanism for channel binding to scaffold proteins.
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- Bioinformatics, 2006, v. 22, n. 13, p. 1546, doi. 10.1093/bioinformatics/btl137
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- Publication type:
- Article
Assigning transmembrane segments to helices in intermediate-resolution structures.
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- Bioinformatics, 2004, v. 20, n. suppl_1, p. i122, doi. 10.1093/bioinformatics/bth939
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- Publication type:
- Article
Assigning transmembrane segments to helices in intermediate-resolution structures.
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- Bioinformatics, 2004, v. 20, p. i122, doi. 10.1093/bioinformatics/bth939
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- Publication type:
- Article
Rapid characterization of secreted recombinant proteins by native mass spectrometry.
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- Communications Biology, 2018, v. 1, n. 1, p. N.PAG, doi. 10.1038/s42003-018-0231-3
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- Article
Highly active enzymes by automated combinatorial backbone assembly and sequence design.
- Published in:
- Nature Communications, 2018, v. 9, p. 1, doi. 10.1038/s41467-018-05205-5
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- Publication type:
- Article
Emerging themes in the computational design of novel enzymes and protein–protein interfaces.
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- FEBS Letters, 2013, v. 587, n. 8, p. 1147, doi. 10.1016/j.febslet.2012.12.009
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- Article
Restricted sidechain plasticity in the structures of native proteins and complexes.
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- Protein Science: A Publication of the Protein Society, 2011, v. 20, n. 4, p. 753, doi. 10.1002/pro.604
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- Article
Design of a basigin‐mimicking inhibitor targeting the malaria invasion protein RH5.
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- Proteins, 2020, v. 88, n. 1, p. 187, doi. 10.1002/prot.25786
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- Publication type:
- Article
High-accuracy modeling of antibody structures by a search for minimum-energy recombination of backbone fragments.
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- Proteins, 2017, v. 85, n. 1, p. 30, doi. 10.1002/prot.25185
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- Publication type:
- Article
A lipophilicity-based energy function for membrane-protein modelling and design.
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- PLoS Computational Biology, 2019, v. 15, n. 8, p. 1, doi. 10.1371/journal.pcbi.1007318
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- Article
Optimizing antibody affinity and stability by the automated design of the variable light-heavy chain interfaces.
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- PLoS Computational Biology, 2019, v. 15, n. 8, p. 1, doi. 10.1371/journal.pcbi.1007207
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- Publication type:
- Article
AbPredict 2: a server for accurate and unstrained structure prediction of antibody variable domains.
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- Bioinformatics, 2019, v. 35, n. 9, p. 1591, doi. 10.1093/bioinformatics/bty822
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- Publication type:
- Article
Overcoming a species-specificity barrier in development of an inhibitory antibody targeting a modulator of tumor stroma.
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- PEDS: Protein Engineering, Design & Selection, 2016, v. 29, n. 4, p. 135, doi. 10.1093/protein/gzv067
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- Article
GGAssembler: Precise and economical design and synthesis of combinatorial mutation libraries.
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- Protein Science: A Publication of the Protein Society, 2024, v. 33, n. 10, p. 1, doi. 10.1002/pro.5169
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- Article
One‐shot design elevates functional expression levels of a voltage‐gated potassium channel.
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- Protein Science: A Publication of the Protein Society, 2024, v. 33, n. 6, p. 1, doi. 10.1002/pro.4995
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- Article
Assessing and enhancing foldability in designed proteins.
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- Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 9, p. 1, doi. 10.1002/pro.4400
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- Article
The AbDesign computational pipeline for modular backbone assembly and design of binders and enzymes.
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- Protein Science: A Publication of the Protein Society, 2021, v. 30, n. 1, p. 151, doi. 10.1002/pro.3970
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- Article
Incorporating an allosteric regulatory site in an antibody through backbone design.
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- Protein Science: A Publication of the Protein Society, 2017, v. 26, n. 4, p. 807, doi. 10.1002/pro.3126
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- Publication type:
- Article
Why reinvent the wheel? Building new proteins based on ready-made parts.
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- Protein Science: A Publication of the Protein Society, 2016, v. 25, n. 7, p. 1179, doi. 10.1002/pro.2892
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- Publication type:
- Article