Works by Flamm, Christoph

Results: 26

Computational design of RNAs with complex energy landscapes.

Published in:

Biopolymers, 2013, v. 99, n. 12, p. 1124, doi. 10.1002/bip.22337

By:

Höner zu Siederdissen, Christian;
Hammer, Stefan;
Abfalter, Ingrid;
Hofacker, Ivo L.;
Flamm, Christoph;
Stadler, Peter F.

Publication type:

Article

A generalized model of the repressilator.

Published in:

Journal of Mathematical Biology, 2006, v. 53, n. 6, p. 905, doi. 10.1007/s00285-006-0035-9

By:

Müller, Stefan;
Hofbauer, Josef;
Endler, Lukas;
Flamm, Christoph;
Widder, Stefanie;
Schuster, Peter

Publication type:

Article

RNAblueprint: flexible multiple target nucleic acid sequence design.

Published in:

Bioinformatics, 2017, v. 33, n. 18, p. 2850, doi. 10.1093/bioinformatics/btx263

By:

Hammer, Stefan;
Tschiatschek, Birgit;
Flamm, Christoph;
Hofacker, Ivo L.;
Findeiß, Sven

Publication type:

Article

Memory-efficient RNA energy landscape exploration.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2584, doi. 10.1093/bioinformatics/btu337

By:

Mann, Martin;
Kucharík, Marcel;
Flamm, Christoph;
Wolfinger, Michael T.

Publication type:

Article

The SBML ODE Solver Library: a native API for symbolic and fast numerical analysis of reaction networks.

Published in:

Bioinformatics, 2006, v. 22, n. 11, p. 1406, doi. 10.1093/bioinformatics/btl086

By:

Rainer Machné;
Andrew Finney;
Stefan Müller;
James Lu;
Stefanie Widder;
Christoph Flamm

Publication type:

Article

Inferring chemical reaction patterns using rule composition in graph grammars.

Published in:

Journal of Systems Chemistry, 2013, v. 4, n. 1, p. 1, doi. 10.1186/1759-2208-4-4

By:

Andersen, Jakob L.;
Flamm, Christoph;
Merkle, Daniel;
Stadler, Peter F.

Publication type:

Article

Evolution of metabolic networks: a computational frame-work.

Published in:

Journal of Systems Chemistry, 2010, v. 1, n. 1, p. 1, doi. 10.1186/1759-2208-1-4

By:

Flamm, Christoph;
Ullrich, Alexander;
Ekker, Heinz;
Mann, Martin;
Högerl, Daniel;
Rohrschneider, Markus;
Sauer, Sebastian;
Scheuermann, Gerik;
Klemm, Konstantin;
Hofacker, Ivo L.;
Stadler, Peter F.

Publication type:

Article

Finding the <italic>K</italic> best synthesis plans.

Published in:

Journal of Cheminformatics, 2018, v. 10, n. 1, p. 1, doi. 10.1186/s13321-018-0273-z

By:

Fagerberg, Rolf;
Flamm, Christoph;
Kianian, Rojin;
Merkle, Daniel;
Stadler, Peter F.

Publication type:

Article

REGIONAL, NATIONAL, GLOBAL? CAUCASIAN MUSIC IN WESTERN PERSPECTIVE.

Published in:

Musicology & Cultural Science / Musikismc'odneoba da Kulturologia, 2019, v. 20, n. 2, p. 11

By:

Flamm, Christoph

Publication type:

Article

Expressiveness in Stravinsky’s Late Works.

Published in:

Muzikologija, 2023, n. 34, p. 59, doi. 10.2298/MUZ2334059F

By:

Flamm, Christoph

Publication type:

Article

"Minimal metabolism": A key concept to investigate the origins and nature of biological systems.

Published in:

BioEssays, 2021, v. 43, n. 10, p. 1, doi. 10.1002/bies.202100103

By:

Lauber, Nino;
Flamm, Christoph;
Ruiz‐Mirazo, Kepa

Publication type:

Article

Partial Imaginary Transition State (ITS) Graphs: A Formal Framework for Research and Analysis of Atom-to-Atom Maps of Unbalanced Chemical Reactions and Their Completions.

Published in:

Symmetry (20738994), 2024, v. 16, n. 9, p. 1217, doi. 10.3390/sym16091217

By:

González Laffitte, Marcos E.;
Weinbauer, Klaus;
Phan, Tieu-Long;
Beier, Nora;
Domschke, Nico;
Flamm, Christoph;
Gatter, Thomas;
Merkle, Daniel;
Stadler, Peter F.

Publication type:

Article

Evolutionary patterns of non-coding RNAs

Published in:

Theory in Biosciences, 2005, v. 123, n. 4, p. 301, doi. 10.1016/j.thbio.2005.01.002

By:

Bompfünewerer, Athanasius F.;
Flamm, Christoph;
Fried, Claudia;
Fritzsch, Guido;
Hofacker, Ivo L.;
Lehmann, Jörg;
Missal, Kristin;
Mosig, Axel;
Müller, Bettina;
Prohaska, Sonja J.;
Stadler, Bärbel M.R.;
Stadler, Peter F.;
Tanzer, Andrea;
Washietl, Stefan;
Witwer, Christina

Publication type:

Article

'LIBERA' CHI? ALCUNE DOMANDE SUL SIGNIFICATO DEI 'CANTI DI PRIGIONIA' DI LUIGI DALLAPICCOLA.

Published in:

Rivista Italiana di Musicologia, 2008, v. 43, n. 1, p. 381

By:

FLAMM, CHRISTOPH

Publication type:

Article

Towards Optimal DNA-Templated Computing.

Published in:

International Journal of Unconventional Computing, 2015, v. 11, n. 3/4, p. 185

By:

ANDERSEN, JAKOB L.;
FLAMM, CHRISTOPH;
HANCZYC, MARTIN M.;
MERKLE, DANIEL

Publication type:

Article

In silico Support for Eschenmoser's Glyoxylate Scenario.

Published in:

Israel Journal of Chemistry, 2015, v. 55, n. 8, p. 919, doi. 10.1002/ijch.201400187

By:

Andersen, Jakob L.;
Flamm, Christoph;
Merkle, Daniel;
Stadler, Peter F.

Publication type:

Article

Navigating the Chemical Space of HCN Polymerization and Hydrolysis: Guiding Graph Grammars by Mass Spectrometry Data.

Published in:

Entropy, 2013, v. 15, n. 10, p. 4066, doi. 10.3390/e15104066

By:

Andersen, Jakob L.;
Andersen, Tommy;
Flamm, Christoph;
Hanczyc, Martin M.;
Merkle, Daniel;
Stadler, Peter F.

Publication type:

Article

Book Reviews.

Published in:

Russian Review, 2004, v. 63, n. 1, p. 144, doi. 10.1111/j.1467-9434.2004.00310.x

By:

Hart, Carol A.;
Bagby, Lewis;
Bowlt, John E.;
Holl, Bruce T.;
Ehre, Milton;
Frazier, Melissa;
Flamm, Christoph;
Kalbouss, George;
Presto, Jenifer;
Emerson, Caryl;
Langen, Tim;
Sach, Maike;
Weeks, Theodore R.;
Adams, Amy Singleton;
Emmons, Terence;
Starks, Tricia;
Korros, Alexandra S.;
Balzer, Harley;
Macey, David A. J.;
Adams, Bruce F.

Publication type:

Article

Noisy: Identification of problematic columns in multiple sequence alignments.

Published in:

Algorithms for Molecular Biology, 2008, v. 3, p. 1, doi. 10.1186/1748-7188-3-7

By:

Dress, Andreas W. M.;
Flamm, Christoph;
Fritzsch, Guido;
Grünewald, Stefan;
Kruspe, Matthias;
Prohaska, Sonja J.;
Stadler, Peter F.

Publication type:

Article

Partition function and base pairing probabilities of RNA heterodimers.

Published in:

Algorithms for Molecular Biology, 2006, v. 1, p. 3, doi. 10.1186/1748-7188-1-3

By:

Bernhart, Stephan H.;
Tafer, Hakim;
Mückstein, Ulrike;
Flamm, Christoph;
Stadler, Peter F.;
Hofacker, Ivo L.

Publication type:

Article

Exploring Plant Sesquiterpene Diversity by Generating Chemical Networks.

Published in:

Processes, 2019, v. 7, n. 4, p. 240, doi. 10.3390/pr7040240

By:

Silva, Waldeyr M. C. da;
Andersen, Jakob L.;
Holanda, Maristela T.;
Walter, Maria Emília M. T.;
Brigido, Marcelo M.;
Stadler, Peter F.;
Flamm, Christoph

Publication type:

Article

Determination of thermodynamic parameters for HIV DIS type loop–loop kissing complexes.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 17, p. 5126, doi. 10.1093/nar/gkh841

By:

Weixlbaumer, Albert;
Werner, Andreas;
Flamm, Christoph;
Westhof, Eric;
Schroeder, Renée

Publication type:

Article

Automatic detection of conserved RNA structure elements in complete RNA virus genomes.

Published in:

Nucleic Acids Research, 1998, v. 26, n. 16, p. 3825, doi. 10.1093/nar/26.16.3825

By:

Hofacker, Ivo L.;
Fekete, Martin;
Flamm, Christoph;
Huynen, Martijn A.;
Rauscher, Susanne;
Stolorz, Paul E.;
Stadler, Peter F.

Publication type:

Article

Modelling Translation Initiation under the Influence of sRNA.

Published in:

International Journal of Molecular Sciences, 2012, v. 13, n. 12, p. 16223, doi. 10.3390/ijms131216223

By:

Amman, Fabian;
Flamm, Christoph;
Hofacker, Ivo

Publication type:

Article

Graph transformation for enzymatic mechanisms.

Published in:

Bioinformatics, 2021, v. 37, p. i392, doi. 10.1093/bioinformatics/btab296

By:

Andersen, Jakob L;
Fagerberg, Rolf;
Flamm, Christoph;
Fontana, Walter;
Kolčák, Juraj;
Laurent, Christophe V F P;
Merkle, Daniel;
Nøjgaard, Nikolai

Publication type:

Article

What makes a reaction network "chemical"?

Published in:

Journal of Cheminformatics, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13321-022-00621-8

By:

Müller, Stefan;
Flamm, Christoph;
Stadler, Peter F.

Publication type:

Article