Works by Fitz-Gibbon, Sorel T.

Results: 21

Indexed, Mapped Mutant Library Enables Reverse Genetics Studies of Biological Processes in Chlamydomonas reinhardtii.

Published in:

Plant Cell, 2016, v. 28, n. 2, p. 367, doi. 10.1105/tpc.15.00465

By:

Li, Xiaobo;
Zhang, Ru;
Patena, Weronika;
Gang, Spencer S.;
Blum, Sean R.;
Ivanova, Nina;
Yue, Rebecca;
Robertson, Jacob M.;
Lefebvre, Paul A.;
Fitz-Gibbon, Sorel T.;
Grossman, Arthur R.;
Jonikas, Martin C.

Publication type:

Article

Chlamydomonas Genome Resource for Laboratory Strains Reveals a Mosaic of Sequence Variation, Identifies True Strain Histories, and Enables Strain-Specific Studies.

Published in:

Plant Cell, 2015, v. 27, n. 9, p. 2335, doi. 10.1105/tpc.15.00508

By:

Gallaher, Sean D.;
Fitz-Gibbon, Sorel T.;
Glaesener, Anne G.;
Pellegrini, Matteo;
Merchant, Sabeeha S.

Publication type:

Article

Systems-Level Analysis of Nitrogen Starvation–Induced Modifications of Carbon Metabolism in a Chlamydomonas reinhardtii Starchless Mutant.

Published in:

Plant Cell, 2013, v. 25, n. 11, p. 4305, doi. 10.1105/tpc.113.117580

By:

Blaby, Ian K.;
Glaesener, Anne G.;
Mettler, Tabea;
Fitz-Gibbon, Sorel T.;
Gallaher, Sean D.;
Liu, Bensheng;
Boyle, Nanette R.;
Kropat, Janette;
Stitt, Mark;
Johnson, Shannon;
Benning, Christoph;
Pellegrini, Matteo;
Casero, David;
Merchant, Sabeeha S.

Publication type:

Article

Geobiological analysis using whole genome-based tree building applied to the Bacteria, Archaea, and Eukarya.

Published in:

Geobiology, 2003, v. 1, n. 1, p. 15, doi. 10.1046/j.1472-4669.2003.00004.x

By:

House, Christopher H.;
Runnegar, Bruce;
Fitz-Gibbon, Sorel T.

Publication type:

Article

High-quality genome and methylomes illustrate features underlying evolutionary success of oaks.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29584-y

By:

Sork, Victoria L.;
Cokus, Shawn J.;
Fitz-Gibbon, Sorel T.;
Zimin, Aleksey V.;
Puiu, Daniela;
Garcia, Jesse A.;
Gugger, Paul F.;
Henriquez, Claudia L.;
Zhen, Ying;
Lohmueller, Kirk E.;
Pellegrini, Matteo;
Salzberg, Steven L.

Publication type:

Article

Amino acid signatures of salinity on an environmental scale with a focus on the Dead Sea.

Published in:

Environmental Microbiology, 2010, v. 12, n. 9, p. 2613, doi. 10.1111/j.1462-2920.2010.02232.x

By:

Rhodes, Matthew E.;
Fitz-Gibbon, Sorel T.;
Oren, Aharon;
House, Christopher H.

Publication type:

Article

Landscape genomics of Quercus lobata reveals genes involved in local climate adaptation at multiple spatial scales.

Published in:

Molecular Ecology, 2021, v. 30, n. 2, p. 406, doi. 10.1111/mec.15731

By:

Gugger, Paul F.;
Fitz‐Gibbon, Sorel T.;
Albarrán‐Lara, Ana;
Wright, Jessica W.;
Sork, Victoria L.

Publication type:

Article

The genome assembly of Island Oak (Quercus tomentella), a relictual island tree species.

Published in:

Journal of Heredity, 2024, v. 115, n. 2, p. 221, doi. 10.1093/jhered/esae002

By:

Mead, Alayna;
Fitz-Gibbon, Sorel T;
Escalona, Merly;
Beraut, Eric;
Sacco, Samuel;
Marimuthu, Mohan P A;
Nguyen, Oanh;
Sork, Victoria L

Publication type:

Article

Ancient Introgression Between Distantly Related White Oaks (Quercus sect. Quercus) Shows Evidence of Climate-Associated Asymmetric Gene Exchange.

Published in:

Journal of Heredity, 2021, v. 112, n. 7, p. 663, doi. 10.1093/jhered/esab053

By:

O'Donnell, Scott T;
Fitz-Gibbon, Sorel T;
Sork, Victoria L

Publication type:

Article

High‐throughput sequencing of the chloroplast and mitochondrion of <italic>Chlamydomonas reinhardtii</italic> to generate improved <italic>de novo</italic> assemblies, analyze expression patterns and transcript speciation, and evaluate diversity among laboratory strains and wild isolates

Published in:

Plant Journal, 2018, v. 93, n. 3, p. 545, doi. 10.1111/tpj.13788

By:

Gallaher, Sean D.;
Fitz‐Gibbon, Sorel T.;
Strenkert, Daniela;
Purvine, Samuel O.;
Pellegrini, Matteo;
Merchant, Sabeeha S.

Publication type:

Article

Ni induces the CRR1-dependent regulon revealing overlap and distinction between hypoxia and Cu deficiency responses in Chlamydomonas reinhardtii.

Published in:

Metallomics, 2016, v. 8, n. 7, p. 679, doi. 10.1039/c6mt00063k

By:

Blaby-Haas, Crysten E.;
Castruita, Madeli;
Fitz-Gibbon, Sorel T.;
Kropat, Janette;
Merchant, Sabeeha S.

Publication type:

Article

Genome-wide gene order distances support clustering the gram-positive bacteria.

Published in:

Frontiers in Microbiology, 2015, v. 5, p. 1, doi. 10.3389/fmicb.2014.00785

By:

House, Christopher H.;
Pellegrini, Matteo;
Fitz-Gibbon, Sorel T.

Publication type:

Article

Terminal addition, the Cambrian radiation and the Phanerozoic evolution of bilaterian form.

Published in:

Evolution & Development, 2005, v. 7, n. 6, p. 498, doi. 10.1111/j.1525-142X.2005.05055.x

By:

Jacobs, David K.;
Hughes, Nigel C.;
Fitz-Gibbon, Sorel T.;
Winchell, Christopher J.

Publication type:

Article

Publisher Correction: An epigenetic gene silencing pathway selectively acting on transgenic DNA in the green alga Chlamydomonasis.

Published in:

2021

By:

Neupert, Juliane;
Gallaher, Sean D.;
Lu, Yinghong;
Strenkert, Daniela;
Segal, Na'ama;
Barahimipour, Rouhollah;
Fitz-Gibbon, Sorel T.;
Schroda, Michael;
Merchant, Sabeeha S.;
Bock, Ralph

Publication type:

Correction Notice

An epigenetic gene silencing pathway selectively acting on transgenic DNA in the green alga Chlamydomonas.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-19983-4

By:

Neupert, Juliane;
Gallaher, Sean D.;
Lu, Yinghong;
Strenkert, Daniela;
Segal, Na'ama;
Barahimipour, Rouhollah;
Fitz-Gibbon, Sorel T.;
Schroda, Michael;
Merchant, Sabeeha S.;
Bock, Ralph

Publication type:

Article

Whole genome-based phylogenetic analysis of free-living microorganisms.

Published in:

Nucleic Acids Research, 1999, v. 27, n. 21, p. 4218, doi. 10.1093/nar/27.21.4218

By:

Fitz-Gibbon, Sorel T.;
House, Christopher H.

Publication type:

Article

Landscape genomics provides evidence of climate‐associated genetic variation in Mexican populations of Quercus rugosa.

Published in:

Evolutionary Applications, 2018, v. 11, n. 10, p. 1842, doi. 10.1111/eva.12684

By:

Martins, Karina;
Gugger, Paul F.;
Llanderal‐Mendoza, Jesus;
González‐Rodríguez, Antonio;
Fitz‐Gibbon, Sorel T.;
Zhao, Jian‐Li;
Rodríguez‐Correa, Hernando;
Oyama, Ken;
Sork, Victoria L.

Publication type:

Article

NFTest: automated testing of Nextflow pipelines.

Published in:

Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae081

By:

Patel, Yash;
Zhu, Chenghao;
Yamaguchi, Takafumi N;
Bugh, Yuan Zhe;
Tian, Mao;
Holmes, Aaron;
Fitz-Gibbon, Sorel T;
Boutros, Paul C

Publication type:

Article

Complete genomic sequences of <italic>Propionibacterium freudenreichii</italic> phages from Swiss cheese reveal greater diversity than <italic>Cutibacterium</italic> (formerly <italic>Propionibacterium) acnes</italic> phages.

Published in:

BMC Microbiology, 2018, v. 18, p. 1, doi. 10.1186/s12866-018-1159-y

By:

Cheng, Lucy;
Marinelli, Laura J.;
Grosset, Noël;
Fitz-Gibbon, Sorel T.;
Bowman, Charles A.;
Dang, Brian Q.;
Russell, Daniel A.;
Jacobs-Sera, Deborah;
Shi, Baochen;
Pellegrini, Matteo;
Miller, Jeff F.;
Gautier, Michel;
Hatfull, Graham F.;
Modlin, Robert L.

Publication type:

Article

Using Homolog Groups to Create a Whole-Genomic Tree of Free-Living Organisms: An Update.

Published in:

Journal of Molecular Evolution, 2002, v. 54, n. 4, p. 539, doi. 10.1007/s00239-001-0054-5

By:

House, Christopher H.;
Fitz-Gibbon, Sorel T.

Publication type:

Article

First Draft Assembly and Annotation of the Genome of a California Endemic Oak Quercus lobata Née (Fagaceae).

Published in:

G3: Genes | Genomes | Genetics, 2016, v. 6, n. 11, p. 3485, doi. 10.1534/g3.116.030411

By:

Sork, Victoria L.;
Fitz-Gibbon, Sorel T.;
Puiu, Daniela;
Crepeau, Marc;
Gugger, Paul F.;
Sherman, Rachel;
Stevens, Kristian;
Langley, Charles H.;
Pellegrini, Matteo;
Salzberg, Steven L.

Publication type:

Article