Works matching AU Fineran, Peter C.

Results: 57

SorTn-seq: a high-throughput functional genomics approach to discovering regulators of bacterial gene expression.

Published in:

Nature Protocols, 2021, v. 16, n. 9, p. 4382, doi. 10.1038/s41596-021-00582-6

By:

Smith, Leah M.;
Jackson, Simon A.;
Gardner, Paul P.;
Fineran, Peter C.

Publication type:

Article

A processed noncoding RNA regulates an altruistic bacterial antiviral system.

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 2, p. 185, doi. 10.1038/nsmb.1981

By:

Blower, Tim R.;
Pei, Xue Y.;
Short, Francesca L.;
Fineran, Peter C.;
Humphreys, David P.;
Luisi, Ben F.;
Salmond, George P. C.

Publication type:

Article

A century of the phage: past, present and future.

Published in:

Nature Reviews Microbiology, 2015, v. 13, n. 12, p. 777, doi. 10.1038/nrmicro3564

By:

Salmond, George P. C.;
Fineran, Peter C.

Publication type:

Article

CRISPR-Cas systems: beyond adaptive immunity.

Published in:

Nature Reviews Microbiology, 2014, v. 12, n. 5, p. 317, doi. 10.1038/nrmicro3241

By:

Westra, Edze R.;
Buckling, Angus;
Fineran, Peter C.

Publication type:

Article

Serratia‐based toxin cluster elements are associated with a type I fimbria.

Published in:

MicrobiologyOpen, 2024, v. 13, n. 1, p. 1, doi. 10.1002/mbo3.1395

By:

Sitter, Lesley;
Schoof, Marion;
Glare, Travis R.;
Cox, Murray P.;
Fineran, Peter C.;
Gardner, Paul P.;
Hurst, Mark R. H.

Publication type:

Article

Bioinformatic evidence of widespread priming in type I and II CRISPR-Cas systems.

Published in:

RNA Biology, 2019, v. 16, n. 4, p. 566, doi. 10.1080/15476286.2018.1509662

By:

Nicholson, Thomas J.;
Jackson, Simon A.;
Croft, Bradley I.;
Staals, Raymond H.J.;
Fineran, Peter C.;
Brown, Chris M.

Publication type:

Article

CRISPRDetect: A flexible algorithm to define CRISPR arrays.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2627-0

By:

Biswas, Ambarish;
Staals, Raymond H. J.;
Morales, Sergio E.;
Fineran, Peter C.;
Brown, Chris M.

Publication type:

Article

Whole genome CRISPRi screening identifies druggable vulnerabilities in an isoniazid resistant strain of Mycobacterium tuberculosis.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-54072-w

By:

Wang, XinYue;
Jowsey, William J.;
Cheung, Chen-Yi;
Smart, Caitlan J.;
Klaus, Hannah R.;
Seeto, Noon EJ;
Waller, Natalie JE;
Chrisp, Michael T.;
Peterson, Amanda L.;
Ofori-Anyinam, Boatema;
Strong, Emily;
Nijagal, Brunda;
West, Nicholas P.;
Yang, Jason H.;
Fineran, Peter C.;
Cook, Gregory M.;
Jackson, Simon A.;
McNeil, Matthew B.

Publication type:

Article

RNA targeting and cleavage by the type III-Dv CRISPR effector complex.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-47506-y

By:

Schwartz, Evan A.;
Bravo, Jack P. K.;
Ahsan, Mohd;
Macias, Luis A.;
McCafferty, Caitlyn L.;
Dangerfield, Tyler L.;
Walker, Jada N.;
Brodbelt, Jennifer S.;
Palermo, Giulia;
Fineran, Peter C.;
Fagerlund, Robert D.;
Taylor, David W.

Publication type:

Article

The Cpf1 CRISPR-Cas protein expands genome-editing tools.

Published in:

Genome Biology, 2015, v. 16, p. 1, doi. 10.1186/s13059-015-0824-9

By:

Fagerlund, Robert D.;
Staals, Raymond H. J.;
Fineran, Peter C.

Publication type:

Article

Transposon insertion libraries for the characterization of mutants from the kiwifruit pathogen Pseudomonas syringae pv. actinidiae.

Published in:

PLoS ONE, 2017, v. 12, n. 3, p. 1, doi. 10.1371/journal.pone.0172790

By:

Mesarich, Carl H.;
Rees-George, Jonathan;
Gardner, Paul P.;
Ghomi, Fatemeh Ashari;
Gerth, Monica L.;
Andersen, Mark T.;
Rikkerink, Erik H. A.;
Fineran, Peter C.;
Templeton, Matthew D.

Publication type:

Article

Strategies for the biocontrol Pseudomonas infections pre‐fruit harvest.

Published in:

Microbial Biotechnology, 2024, v. 17, n. 10, p. 1, doi. 10.1111/1751-7915.70017

By:

Warring, Suzanne L.;
Sisson, Hazel M.;
Fineran, Peter C.;
Rabiey, Mojgan

Publication type:

Article

The PhoBR two-component system regulates antibiotic biosynthesis in Serratia in response to phosphate.

Published in:

BMC Microbiology, 2009, v. 9, p. 1, doi. 10.1186/1471-2180-9-112

By:

Gristwood, Tamzin;
Fineran, Peter C.;
Everson, Lee;
Williamson, Neil R.;
Salmond, George P.

Publication type:

Article

Pectobacterium atrosepticum and Pectobacterium carotovorum Harbor Distinct, Independently Acquired Integrative and Conjugative Elements Encoding Coronafacic Acid that Enhance Virulence on Potato Stems.

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00397

By:

Panda, Preetinanda;
Vanga, Bhanupratap R.;
Lu, Ashley;
Fiers, Mark;
Fineran, Peter C.;
Butler, Ruth;
Armstrong, Karen;
Ronson, Clive W.;
Pitman, Andrew R.

Publication type:

Article

PigZ, a TetR/AcrR family repressor, modulates secondary metabolism via the expression of a putative four-component resistance-nodulation-cell-division efflux pump, ZrpADBC, in Serratia sp. ATCC 39006.

Published in:

Molecular Microbiology, 2008, v. 69, n. 2, p. 418, doi. 10.1111/j.1365-2958.2008.06291.x

By:

Gristwood, Tamzin;
Fineran, Peter C.;
Everson, Lee;
Salmond, George P. C.

Publication type:

Article

Biosynthesis of tripyrrole andβ-lactam secondary metabolites inSerratia: integration of quorum sensing with multiple new regulatory components in the control of prodigiosin and carbapenem antibiotic production.

Published in:

Molecular Microbiology, 2005, v. 56, n. 6, p. 1495, doi. 10.1111/j.1365-2958.2005.04660.x

By:

Fineran, Peter C.;
Slater, Holly;
Everson, Lee;
Hughes, Katie;
Salmond, George P. C.

Publication type:

Article

Type I-F CRISPR-Cas resistance against virulent phages results in abortive infection and provides population-level immunity.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-13445-2

By:

Watson, Bridget N. J.;
Vercoe, Reuben B.;
Salmond, George P. C.;
Westra, Edze R.;
Staals, Raymond H. J.;
Fineran, Peter C.

Publication type:

Article

Phage-based biocontrol strategies and their application in agriculture and aquaculture.

Published in:

Biochemical Society Transactions, 2018, v. 46, n. 6, p. 1605, doi. 10.1042/BST20180178

By:

Dy, Ron L.;
Rigano, Luciano A.;
Fineran, Peter C.

Publication type:

Article

The subtype I-F CRISPR-Cas system influences pathogenicity island retention in Pectobacterium atrosepticum via crRNA generation and Csy complex formation.

Published in:

Biochemical Society Transactions, 2013, v. 41, n. 6, p. 1468, doi. 10.1042/BST20130151

By:

Richter, Corinna;
Fineran, Peter C.

Publication type:

Article

Antitoxin autoregulation of M. tuberculosis toxinantitoxin expression through negative cooperativity arising from multiple inverted repeat sequencess.

Published in:

Biochemical Journal, 2020, v. 477, n. 12, p. 2401, doi. 10.1042/BCJ20200368

By:

Beck, Izaak N.;
Usher, Ben;
Hampton, Hannah G.;
Fineran, Peter C.;
Blower, Tim R.

Publication type:

Article

Structural plasticity and in vivo activity of Cas1 from the type I-F CRISPR-Cas system.

Published in:

Biochemical Journal, 2016, v. 473, n. 8, p. 1063, doi. 10.1042/BCJ20160078

By:

Wilkinson, Max E.;
Nakatani, Yoshio;
Staals, Raymond H. J.;
Kieper, Sebastian N.;
Opel-Reading, Helen K.;
McKenzie, Rebecca E.;
Fineran, Peter C.;
Krause, Kurt L.

Publication type:

Article

A lipopolysaccharide‐dependent phage infects a pseudomonad phytopathogen and can evolve to evade phage resistance.

Published in:

Environmental Microbiology, 2022, v. 24, n. 10, p. 4834, doi. 10.1111/1462-2920.16106

By:

Warring, Suzanne L.;
Malone, Lucia M.;
Jayaraman, Jay;
Easingwood, Richard A.;
Rigano, Luciano A.;
Frampton, Rebekah A.;
Visnovsky, Sandra B.;
Addison, Shea M.;
Hernandez, Loreto;
Pitman, Andrew R.;
Lopez Acedo, Elena;
Kleffmann, Torsten;
Templeton, Matthew D.;
Bostina, Mihnea;
Fineran, Peter C.

Publication type:

Article

Evolution of virulence in a novel family of transmissible mega‐plasmids.

Published in:

Environmental Microbiology, 2021, v. 23, n. 9, p. 5289, doi. 10.1111/1462-2920.15595

By:

Sitter, Thomas L.;
Vaughan, Amy L.;
Schoof, Marion;
Jackson, Simon A.;
Glare, Travis R.;
Cox, Murray P.;
Fineran, Peter C.;
Gardner, Paul P.;
Hurst, Mark R. H.

Publication type:

Article

Variation at the common polysaccharide antigen locus drives lipopolysaccharide diversity within the Pseudomonas syringae species complex.

Published in:

Environmental Microbiology, 2020, v. 22, n. 12, p. 5356, doi. 10.1111/1462-2920.15250

By:

Jayaraman, Jay;
Jones, William T.;
Harvey, Dawn;
Hemara, Lauren M.;
McCann, Honour C.;
Yoon, Minsoo;
Warring, Suzanne L.;
Fineran, Peter C.;
Mesarich, Carl H.;
Templeton, Matthew D.

Publication type:

Article

Integrated regulation involving quorum sensing, a two-component system, a GGDEF/EAL domain protein and a post-transcriptional regulator controls swarming and RhlA-dependent surfactant biosynthesis in Serratia.

Published in:

Environmental Microbiology, 2008, v. 10, n. 5, p. 1202, doi. 10.1111/j.1462-2920.2007.01536.x

By:

Williamson, Neil R.;
Fineran, Peter C.;
Ogawa, Wakano;
Woodley, Louise R.;
Salmond, George P. C.

Publication type:

Article

CRISPRTarget Bioinformatic prediction and analysis of crRNA targets.

Published in:

RNA Biology, 2013, v. 10, n. 5, p. 817, doi. 10.4161/rna.24046

By:

Biswas, Ambarish;
Gagnon, Joshua N.;
Brouns, Stan J.J.;
Fineran, Peter C.;
Brown, Chris M.

Publication type:

Article

CRISPR-Cas systems preferentially target the leading regions of MOB<sub>F</sub> conjugative plasmids.

Published in:

RNA Biology, 2013, v. 10, n. 5, p. 749, doi. 10.4161/rna.24202

By:

Westra, Edze R.;
Staals, Raymond H.J.;
Gort, Gerrit;
Høgh, Søren;
Neumann, Sarah;
de la Cruz, Fernando;
Fineran, Peter C.;
Brouns, Stan J.J.

Publication type:

Article

Csy4 is responsible for CRISPR RNA processing in Pectobacterium atrosepticum.

Published in:

RNA Biology, 2011, v. 8, n. 3, p. 517, doi. 10.4161/rna.8.3.15190

By:

Przybilski, Rita;
Richter, Corinna;
Gristwood, Tamzin;
Clulow, James S.;
Vercoe, Reuben B.;
Fineran, Peter C.

Publication type:

Article

The biosynthesis and regulation of bacterial prodiginines.

Published in:

Nature Reviews Microbiology, 2006, v. 4, n. 12, p. 887, doi. 10.1038/nrmicro1531

By:

Williamson, Neil R.;
Fineran, Peter C.;
Leeper, Finian J.;
Salmond, George P. C.

Publication type:

Article

Accurate computational prediction of the transcribed strand of CRISPR non-coding RNAs.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1805, doi. 10.1093/bioinformatics/btu114

By:

Biswas, Ambarish;
Fineran, Peter C.;
Brown, Chris M.

Publication type:

Article

Widespread repression of anti-CRISPR production by anti-CRISPR-associated proteins.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8615, doi. 10.1093/nar/gkac674

By:

Shehreen, Saadlee;
Birkholz, Nils;
Fineran, Peter C;
Brown, Chris M

Publication type:

Article

Molecular basis of anti-CRISPR operon repression by Aca10.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 15, p. 8919, doi. 10.1093/nar/gkac656

By:

Lee, So Yeon;
Birkholz, Nils;
Fineran, Peter C;
Park, Hyun Ho

Publication type:

Article

PADLOC: a web server for the identification of antiviral defence systems in microbial genomes.

Published in:

Nucleic Acids Research, 2022, v. 50, n. W1, p. W541, doi. 10.1093/nar/gkac400

By:

Payne, Leighton J;
Meaden, Sean;
Mestre, Mario R;
Palmer, Chris;
Toro, Nicolás;
Fineran, Peter C;
Jackson, Simon A

Publication type:

Article

CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 8, p. 4315, doi. 10.1093/nar/gkab859

By:

Pinilla-Redondo, Rafael;
Russel, Jakob;
Mayo-Muñoz, David;
Shah, Shiraz A;
Garrett, Roger A;
Nesme, Joseph;
Madsen, Jonas S;
Fineran, Peter C;
Sørensen, Søren J

Publication type:

Article

mobile restriction–modification system provides phage defence and resolves an epigenetic conflict with an antagonistic endonuclease.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 6, p. 3348, doi. 10.1093/nar/gkac147

By:

Birkholz, Nils;
Jackson, Simon A;
Fagerlund, Robert D;
Fineran, Peter C

Publication type:

Article

Type I CRISPR-Cas provides robust immunity but incomplete attenuation of phage-induced cellular stress.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 1, p. 160, doi. 10.1093/nar/gkab1210

By:

Malone, Lucia M;
Hampton, Hannah G;
Morgan, Xochitl C;
Fineran, Peter C

Publication type:

Article

Identification and classification of antiviral defence systems in bacteria and archaea with PADLOC reveals new system types.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 19, p. 10868, doi. 10.1093/nar/gkab883

By:

Payne, Leighton J;
Todeschini, Thomas C;
Wu, Yi;
Perry, Benjamin J;
Ronson, Clive W;
Fineran, Peter C;
Nobrega, Franklin L;
Jackson, Simon A

Publication type:

Article

The Rsm (Csr) post-transcriptional regulatory pathway coordinately controls multiple CRISPR–Cas immune systems.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 16, p. 9508, doi. 10.1093/nar/gkab704

By:

Campa, Aroa Rey;
Smith, Leah M;
Hampton, Hannah G;
Sharma, Sahil;
Jackson, Simon A;
Bischler, Thorsten;
Sharma, Cynthia M;
Fineran, Peter C

Publication type:

Article

The autoregulator Aca2 mediates anti-CRISPR repression.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 18, p. 9658, doi. 10.1093/nar/gkz721

By:

Birkholz, Nils;
Fagerlund, Robert D;
Smith, Leah M;
Jackson, Simon A;
Fineran, Peter C

Publication type:

Article

Regulation of the Type I-F CRISPR-Cas system by CRP-cAMP and GalM controls spacer acquisition and interference.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 6038, doi. 10.1093/nar/gkv517

By:

Patterson, Adrian G.;
Chang, James T.;
Taylor, Corinda;
Fineran, Peter C.

Publication type:

Article

Priming in the Type I-F CRISPR-Cas system triggers strand-independent spacer acquisition, bi-directionally from the primed protospacer.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 13, p. 8516, doi. 10.1093/nar/gku527

By:

Richter, Corinna;
Dy, Ron L.;
McKenzie, Rebecca E.;
Watson, Bridget N.J.;
Taylor, Corinda;
Chang, James T.;
McNeil, Matthew B.;
Staals, Raymond H.J.;
Fineran, Peter C.

Publication type:

Article

A widespread bacteriophage abortive infection system functions through a Type IV toxin–antitoxin mechanism.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 7, p. 4590, doi. 10.1093/nar/gkt1419

By:

Dy, Ron L.;
Przybilski, Rita;
Semeijn, Koen;
Salmond, George P.C.;
Fineran, Peter C.

Publication type:

Article

Identification and classification of bacterial Type III toxin–antitoxin systems encoded in chromosomal and plasmid genomes.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 13, p. 6158, doi. 10.1093/nar/gks231

By:

Blower, Tim R.;
Short, Francesca L.;
Rao, Feng;
Mizuguchi, Kenji;
Pei, Xue Y.;
Fineran, Peter C.;
Luisi, Ben F.;
Salmond, George P. C.

Publication type:

Article

Interference-driven spacer acquisition is dominant over naive and primed adaptation in a native CRISPR-Cas system.

Published in:

Nature Communications, 2016, v. 7, n. 10, p. 12853, doi. 10.1038/ncomms12853

By:

Staals, Raymond H. J.;
Jackson, Simon A.;
Biswas, Ambarish;
Brouns, Stan J. J.;
Brown, Chris M.;
Fineran, Peter C.

Publication type:

Article

Function and Regulation of Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) / CRISPR Associated (Cas) Systems.

Published in:

Viruses (1999-4915), 2012, v. 4, n. 10, p. 2291, doi. 10.3390/v4102291

By:

Richter, Corinna;
Chang, James T.;
Fineran, Peter C.

Publication type:

Article

Advances in Bacteriophage-Mediated Control of Plant Pathogens.

Published in:

International Journal of Microbiology, 2012, p. 1, doi. 10.1155/2012/326452

By:

Frampton, Rebekah A.;
Pitman, Andrew R.;
Fineran, Peter C.

Publication type:

Article

The succinate dehydrogenase assembly factor, SdhE, is required for the flavinylation and activation of fumarate reductase in bacteria.

Published in:

FEBS Letters, 2014, v. 588, n. 3, p. 414, doi. 10.1016/j.febslet.2013.12.019

By:

McNeil, Matthew B.;
Hampton, Hannah G.;
Hards, Kiel J.;
Watson, Bridget N.J.;
Cook, Gregory M.;
Fineran, Peter C.

Publication type:

Article

Discovery of multiple anti-CRISPRs highlights anti-defense gene clustering in mobile genetic elements.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-19415-3

By:

Pinilla-Redondo, Rafael;
Shehreen, Saadlee;
Marino, Nicole D.;
Fagerlund, Robert D.;
Brown, Chris M.;
Sørensen, Søren J.;
Fineran, Peter C.;
Bondy-Denomy, Joseph

Publication type:

Article

Phage ΦPan70, a Putative Temperate Phage, Controls Pseudomonas aeruginosa in Planktonic, Biofilm and Burn Mouse Model Assays.

Published in:

Viruses (1999-4915), 2015, v. 7, n. 8, p. 4602, doi. 10.3390/v7082835

By:

Holguín, Angela V.;
Rangel, Guillermo;
Clavijo, Viviana;
Prada, Catalina;
Mantilla, Marcela;
Gomez, María Catalina;
Kutter, Elizabeth;
Taylor, Corinda;
Fineran, Peter C.;
González Barrios, Andrés Fernando;
Vives, Martha J.

Publication type:

Article

Genome, Proteome and Structure of a T7-Like Bacteriophage of the Kiwifruit Canker Phytopathogen Pseudomonas syringae pv. actinidiae.

Published in:

Viruses (1999-4915), 2015, v. 7, n. 7, p. 3361, doi. 10.3390/v7072776

By:

Pitman, Andrew R.;
Young, Vivienne L.;
Bostina, Mihnea;
Easingwood, Richard A.;
Frampton, Rebekah A.;
Kleffmann, Torsten;
Taylor, Corinda;
Fineran, Peter C.;
Tong, Brian;
Chen, Danni;
Acedo, Elena Lopez

Publication type:

Article