Works matching AU Fields, Christopher J.

Results: 29

The Bio-Community Perl toolkit for microbial ecology.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1926, doi. 10.1093/bioinformatics/btu130

By:

Angly, Florent E.;
Fields, Christopher J.;
Tyson, Gene W.

Publication type:

Article

Draft Assembly of Elite Inbred Line PH207 Provides Insights into Genomic and Transcriptome Diversity in Maize.

Published in:

Plant Cell, 2016, v. 28, n. 11, p. 2700, doi. 10.1105/tpc.16.00353

By:

Hirsch, Candice N.;
Hirsch, Cory D.;
Brohammer, Alex B.;
Bowman, Megan J.;
Soifer, Ilya;
Barad, Omer;
Shem-Tov, Doron;
Baruch, Kobi;
Lu, Fei;
Hernandez, Alvaro G.;
Fields, Christopher J.;
Wright, Chris L.;
Koehler, Klaus;
Springer, Nathan M.;
Buckler, Edward;
Buell, C. Robin;
Leon, Natalia de;
Kaeppler, Shawn M.;
Childs, Kevin L.;
Mikel, Mark A.

Publication type:

Article

Using a multiple-delivery-mode training approach to develop local capacity and infrastructure for advanced bioinformatics in Africa.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 2, p. 1, doi. 10.1371/journal.pcbi.1008640

By:

Ras, Verena;
Botha, Gerrit;
Aron, Shaun;
Lennard, Katie;
Allali, Imane;
Claassen-Weitz, Shantelle;
Mwaikono, Kilaza Samson;
Kennedy, Dane;
Holmes, Jessica R.;
Rendon, Gloria;
Panji, Sumir;
Fields, Christopher J;
Mulder, Nicola

Publication type:

Article

Effects of yeast-enriched functionalized canola meal supplementation on apparent total tract macronutrient digestibility and fecal characteristics, fecal microbiota, and immune function of healthy adult dogs.

Published in:

Journal of Animal Science, 2024, v. 102, p. 1, doi. 10.1093/jas/skae224

By:

Guardia-Hidrogo, Vanessa M De La;
Soto-Diaz, Katiria;
Rummell, Lindsey M;
Valizadegan, Negin;
Fields, Christopher J;
Steelman, Andrew J;
Swanson, Kelly S

Publication type:

Article

Draft genome sequences of Chrysoporthe austroafricana, Diplodia scrobiculata, Fusarium nygamai, Leptographium lundbergii, Limonomyces culmigenus, Stagonosporopsis tanaceti, and Thielaviopsis punctulata.

Published in:

IMA Fungus, 2015, v. 6, n. 1, p. 233, doi. 10.5598/imafungus.2015.06.01.15

By:

Wingfield, Brenda D.;
Ades, Peter K.;
Al-Naemi, Fatima A.;
Beirn, Lisa A.;
Bihon, Wubetu;
Crouch, Jo Anne;
Wilhelm de Beer, Z.;
De Vos, Lieschen;
Duong, Tuan A.;
Fields, Christopher J.;
Fourie, Gerda;
Kanzi, Aquillah M.;
Malapi-Wight, Martha;
Pethybridge, Sarah J.;
Radwan, Osman;
Rendon, Gloria;
Slippers, Bernard;
Santana, Quentin C.;
Steenkamp, Emma T.;
Taylor, Paul W. J.

Publication type:

Article

Bile acid oxidation by Eggerthella lenta strains C592 and DSM 2243<sup>T</sup>.

Published in:

Gut Microbes, 2018, v. 9, n. 6, p. 523, doi. 10.1080/19490976.2018.1458180

By:

Harris, Spencer C.;
Devendran, Saravanan;
Méndez- García, Celia;
Mythen, Sean M.;
Wright, Chris L.;
Fields, Christopher J.;
Hernandez, Alvaro G.;
Cann, Isaac;
Hylemon, Phillip B.;
Ridlon, Jason M.

Publication type:

Article

Mosquito microbiota cluster by host sampling location.

Published in:

Parasites & Vectors, 2018, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13071-018-3036-9

By:

Muturi, Ephantus J.;
Lagos-Kutz, Doris;
Dunlap, Christopher;
Ramirez, Jose L.;
Rooney, Alejandro P.;
Hartman, Glen L.;
Fields, Christopher J.;
Rendon, Gloria;
Kim, Chang-Hyun

Publication type:

Article

Feeding Practice and Delivery Mode Are Determinants of Vitamin K in the Infant Gut: An Exploratory Analysis.

Published in:

Current Developments in Nutrition, 2022, v. 6, n. 3, p. 1, doi. 10.1093/cdn/nzac019

By:

Ellis, Jessie L;
Wang, Mei;
Fu, Xueyan;
Fields, Christopher J;
Donovan, Sharon M;
Booth, Sarah L

Publication type:

Article

The 'in vivo lifestyle' of bile acid 7α-dehydroxylating bacteria: comparative genomics, metatranscriptomic, and bile acid metabolomics analysis of a defined microbial community in gnotobiotic mice.

Published in:

Gut Microbes, 2020, v. 11, n. 3, p. 381, doi. 10.1080/19490976.2019.1618173

By:

Ridlon, Jason M.;
Devendran, Saravanan;
Alves, João Mp;
Doden, Heidi;
Wolf, Patricia G.;
Pereira, Gabriel V.;
Ly, Lindsey;
Volland, Alyssa;
Takei, Hajime;
Nittono, Hiroshi;
Murai, Tsuyoshi;
Kurosawa, Takao;
Chlipala, George E.;
Green, Stefan J.;
Hernandez, Alvaro G.;
Fields, Christopher J.;
Wright, Christy L.;
Kakiyama, Genta;
Cann, Isaac;
Kashyap, Purna

Publication type:

Article

Effect of pesticides on microbial communities in container aquatic habitats.

Published in:

Scientific Reports, 2017, p. 44565, doi. 10.1038/srep44565

By:

Muturi, Ephantus J.;
Donthu, Ravi Kiran;
Fields, Christopher J.;
Moise, Imelda K.;
Kim, Chang-Hyun

Publication type:

Article

Effects of a mildly cooked human-grade dog diet on gene expression, skin and coat health measures, and fecal microbiota of healthy adult dogs.

Published in:

Journal of Animal Science, 2022, v. 100, n. 10, p. 1, doi. 10.1093/jas/skac265

By:

Geary, Elizabeth L;
Oba, Patrícia M;
Applegate, Catherine C;
Clark, Lindsay V;
Fields, Christopher J;
Swanson, Kelly S

Publication type:

Article

Xylan degradation by the human gut Bacteroides xylanisolvens XB1A<sup>T</sup> involves two distinct gene clusters that are linked at the transcriptional level.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2680-8

By:

Despres, Jordane;
Forano, Evelyne;
Lepercq, Pascale;
Comtet-Marre, Sophie;
Jubelin, Gregory;
Chambon, Christophe;
Yeoman, Carl J.;
Berg Miller, Margaret E.;
Fields, Christopher J.;
Martens, Eric;
Terrapon, Nicolas;
Henrissat, Bernard;
White, Bryan A.;
Mosoni, Pascale

Publication type:

Article

Unraveling the pectinolytic function of Bacteroides xylanisolvens using a RNA-seq approach and mutagenesis.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2472-1

By:

Despres, Jordane;
Forano, Evelyne;
Lepercq, Pascale;
Comtet-Marre, Sophie;
Jubelin, Grégory;
Yeoman, Carl J.;
Berg Miller, Margret E.;
Fields, Christopher J.;
Terrapon, Nicolas;
Le Bourvellec, Carine;
Renard, Catherine M. G. C.;
Henrissat, Bernard;
White, Bryan A.;
Mosoni, Pascale

Publication type:

Article

Glyphosate’s impact on vegetative growth in leafy spurge identifies molecular processes and hormone cross-talk associated with increased branching.

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 395, doi. 10.1186/s12864-015-1627-9

By:

Doğramacı, Münevver;
Foley, Michael E.;
Horvath, David P.;
Hernandez, Alvaro G.;
Khetani, Radhika S.;
Fields, Christopher J.;
Keating, Kathleen M.;
Mikel, Mark A.;
Anderson, James V.

Publication type:

Article

Sequencing of Argonaute-bound microRNA/mRNA hybrids reveals regulation of the unfolded protein response by microRNA-320a.

Published in:

PLoS Genetics, 2021, v. 17, n. 12, p. 1, doi. 10.1371/journal.pgen.1009934

By:

Fields, Christopher J.;
Li, Lu;
Hiers, Nicholas M.;
Li, Tianqi;
Sheng, Peike;
Huda, Taha;
Shan, Jixiu;
Gay, Lauren;
Gu, Tongjun;
Bian, Jiang;
Kilberg, Michael S.;
Renne, Rolf;
Xie, Mingyi

Publication type:

Article

Fecal Microbiome and Metabolomic Profiles of Mixed-Fed Infants Are More Similar to Formula-Fed than Breastfed Infants.

Published in:

Microorganisms, 2025, v. 13, n. 1, p. 166, doi. 10.3390/microorganisms13010166

By:

Wang, Mei;
Valizadegan, Negin;
Fields, Christopher J.;
Donovan, Sharon M.

Publication type:

Article

Host species and site of collection shape the microbiota of Rift Valley fever vectors in Kenya.

Published in:

PLoS Neglected Tropical Diseases, 2019, v. 13, n. 6, p. 1, doi. 10.1371/journal.pntd.0007361

By:

Tchouassi, David P.;
Muturi, Ephantus J.;
Arum, Samwel O.;
Kim, Chang-Hyun;
Fields, Christopher J.;
Torto, Baldwyn

Publication type:

Article

A soft selective sweep during rapid evolution of gentle behaviour in an Africanized honeybee.

Published in:

Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-01800-0

By:

Avalos, Arian;
Rendon, Gloria;
Fields, Christopher J.;
Hudson, Matthew E.;
Brown, Patrick J.;
Robinson, Gene E.;
Pan, Hailin;
Guojie Zhang;
Cai Li;
Acevedo-Gonzalez, Jenny P.;
Giray, Tugrul

Publication type:

Article

Plasma Exosomal miRNAs in Persons with and without Alzheimer Disease: Altered Expression and Prospects for Biomarkers.

Published in:

PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0139233

By:

Lugli, Giovanni;
Cohen, Aaron M.;
Bennett, David A.;
Shah, Raj C.;
Fields, Christopher J.;
Hernandez, Alvaro G.;
Smalheiser, Neil R.

Publication type:

Article

pyr RNA binding to the Bacillus caldolyticus PyrR attenuation protein – characterization and regulation by uridine and guanosine nucleotides.

Published in:

FEBS Journal, 2008, v. 275, n. 4, p. 655, doi. 10.1111/j.1742-4658.2007.06227.x

By:

Jørgensen, Casper M.;
Fields, Christopher J.;
Chander, Preethi;
Watt, Desmond;
Burgner II, John W.;
Smith, Janet L.;
Switzer, Robert L.

Publication type:

Article

Subacute Exposure to an Environmentally Relevant Dose of Di-(2-ethylhexyl) Phthalate during Gestation Alters the Cecal Microbiome, but Not Pregnancy Outcomes in Mice.

Published in:

Toxics, 2021, v. 9, n. 9, p. 215, doi. 10.3390/toxics9090215

By:

Chiu, Karen;
Bashir, Shah Tauseef;
Gao, Liying;
Gutierrez, Jessica;
de Godoy, Maria R. C.;
Drnevich, Jenny;
Fields, Christopher J.;
Cann, Isaac;
Flaws, Jodi A.;
Nowak, Romana A.

Publication type:

Article

DNA punch cards for storing data on native DNA sequences via enzymatic nicking.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-15588-z

By:

Tabatabaei, S. Kasra;
Wang, Boya;
Athreya, Nagendra Bala Murali;
Enghiad, Behnam;
Hernandez, Alvaro Gonzalo;
Fields, Christopher J.;
Leburton, Jean-Pierre;
Soloveichik, David;
Zhao, Huimin;
Milenkovic, Olgica

Publication type:

Article

Patterns of differential gene expression in adult rotation-resistant and wild-type western corn rootworm digestive tracts.

Published in:

Evolutionary Applications, 2015, v. 8, n. 7, p. 692, doi. 10.1111/eva.12278

By:

Chu, Chia-Ching;
Zavala, Jorge A.;
Spencer, Joseph L.;
Curzi, Matías J.;
Fields, Christopher J.;
Drnevich, Jenny;
Siegfried, Blair D.;
Seufferheld, Manfredo J.

Publication type:

Article

First Draft Genome Assembly of Root-Lesion Nematode Pratylenchus scribneri Generated Using Long-Read Sequencing.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 8, p. 7311, doi. 10.3390/ijms24087311

By:

Arora, Deepika;
Hernandez, Alvaro G.;
Walden, Kimberly K. O.;
Fields, Christopher J.;
Yan, Guiping

Publication type:

Article

Defense against territorial intrusion is associated with DNA methylation changes in the honey bee brain.

Published in:

BMC Genomics, 2018, v. 19, p. 1, doi. 10.1186/s12864-018-4594-0

By:

Herb, Brian R.;
Shook, Molly S.;
Fields, Christopher J.;
Robinson, Gene E.

Publication type:

Article

Using Genomics to Shape the Definition of the Agglutinin-Like Sequence (ALS) Family in the Saccharomycetales.

Published in:

Frontiers in Cellular & Infection Microbiology, 2021, v. 11, p. 1, doi. 10.3389/fcimb.2021.794529

By:

Oh, Soon-Hwan;
Schliep, Klaus;
Isenhower, Allyson;
Rodriguez-Bobadilla, Rubi;
Vuong, Vien M.;
Fields, Christopher J.;
Hernandez, Alvaro G.;
Hoyer, Lois L.

Publication type:

Article

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 6, p. 1767, doi. 10.1093/nar/gkp1137

By:

Cock, Peter J. A.;
Fields, Christopher J.;
Goto, Naohisa;
Heuer, Michael L.;
Rice, Peter M.

Publication type:

Article

High‐quality genome assemblies for nine non‐model North American insect species representing six orders (Insecta: Coleoptera, Diptera, Hemiptera, Hymenoptera, Lepidoptera, Neuroptera).

Published in:

Molecular Ecology Resources, 2024, v. 24, n. 8, p. 1, doi. 10.1111/1755-0998.14010

By:

Walden, Kimberly K. O.;
Cao, Yanghui;
Fields, Christopher J.;
Hernandez, Alvaro G.;
Rendon, Gloria A.;
Robinson, Gene E.;
Skinner, Rachel K.;
Stein, Jeffrey A.;
Dietrich, Christopher H.

Publication type:

Article

Assessing computational genomics skills: Our experience in the H3ABioNet African bioinformatics network.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 6, p. 1, doi. 10.1371/journal.pcbi.1005419

By:

Jongeneel, C. Victor;
Achinike-Oduaran, Ovokeraye;
Adebiyi, Ezekiel;
Adebiyi, Marion;
Adeyemi, Seun;
Akanle, Bola;
Aron, Shaun;
Ashano, Efejiro;
Bendou, Hocine;
Botha, Gerrit;
Chimusa, Emile;
Choudhury, Ananyo;
Donthu, Ravikiran;
Drnevich, Jenny;
Falola, Oluwadamila;
Fields, Christopher J.;
Hazelhurst, Scott;
Hendry, Liesl;
Isewon, Itunuoluwa;
Khetani, Radhika S.

Publication type:

Article