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Specific mutations in H5N1 mainly impact the magnitude and velocity of the host response in mice.
Published in:
BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-69
By:
- Tchitchek, Nicolas;
- Eisfeld, Amie J;
- Tisoncik-Go, Jennifer;
- Josset, Laurence;
- Gralinski, Lisa E;
- Bécavin, Christophe;
- Tilton, Susan C;
- Webb-Robertson, Bobbie-Jo;
- Ferris, Martin T;
- Totura, Allison L;
- Chengjun Li;
- Neumann, Gabriele;
- Metz, Thomas O;
- Smith, Richard D;
- Waters, Katrina M;
- Baric, Ralph;
- Yoshihiro Kawaoka;
- Katze, Michael G
Publication type:
Article
Host Genetic Variation Impacts SARS-CoV-2 Vaccination Response in the Diversity Outbred Mouse Population.
Published in:
Vaccines, 2024, v. 12, n. 1, p. 103, doi. 10.3390/vaccines12010103
By:
- Cruz Cisneros, Marta C.;
- Anderson, Elizabeth J.;
- Hampton, Brea K.;
- Parotti, Breantié;
- Sarkar, Sanjay;
- Taft-Benz, Sharon;
- Bell, Timothy A.;
- Blanchard, Matthew;
- Dillard, Jacob A.;
- Dinnon III, Kenneth H.;
- Hock, Pablo;
- Leist, Sarah R.;
- Madden, Emily A.;
- Shaw, Ginger D.;
- West, Ande;
- Baric, Ralph S.;
- Baxter, Victoria K.;
- Pardo-Manuel de Villena, Fernando;
- Heise, Mark T.;
- Ferris, Martin T.
Publication type:
Article
High Frequency of Mutations That Expand the Host Range of an RNA Virus.
Published in:
Genetics, 2007, v. 176, n. 2, p. 1013, doi. 10.1534/genetics.106.064634
By:
- Ferris, Martin T.;
- Joyce, Paul;
- Burch, Christina L.
Publication type:
Article
CC002/Unc females are mouse models of exercise‐induced paradoxical fat response.
Published in:
Physiological Reports, 2018, v. 6, n. 12, p. 1, doi. 10.14814/phy2.13716
By:
- McMullan, Rachel C.;
- Ferris, Martin T.;
- Bell, Timothy A.;
- Menachery, Vineet D.;
- Baric, Ralph S.;
- Hua, Kunjie;
- Pomp, Daniel;
- Smith‐Ryan, Abbie E.;
- de Villena, Fernando Pardo‐Manuel
Publication type:
Article
Cocaine-Induced Locomotor Activation Differs Across Inbred Mouse Substrains.
Published in:
Frontiers in Psychiatry, 2022, v. 13, p. 1, doi. 10.3389/fpsyt.2022.800245
By:
- Gaines, Christiann H.;
- Schoenrock, Sarah A.;
- Farrington, Joseph;
- Lee, David F.;
- Aponte-Collazo, Lucas J.;
- Shaw, Ginger D.;
- Miller, Darla R.;
- Ferris, Martin T.;
- Pardo-Manuel de Villena, Fernando;
- Tarantino, Lisa M.
Publication type:
Article
New Metrics for Evaluating Viral Respiratory Pathogenesis.
Published in:
PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0131451
By:
- Menachery, Vineet D.;
- Gralinski, Lisa E.;
- Baric, Ralph S.;
- Ferris, Martin T.
Publication type:
Article
Baseline T cell immune phenotypes predict virologic and disease control upon SARS-CoV infection in Collaborative Cross mice.
Published in:
PLoS Pathogens, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.ppat.1009287
By:
- Graham, Jessica B.;
- Swarts, Jessica L.;
- Leist, Sarah R.;
- Schäfer, Alexandra;
- Menachery, Vineet D.;
- Gralinski, Lisa E.;
- Jeng, Sophia;
- Miller, Darla R.;
- Mooney, Michael A.;
- McWeeney, Shannon K.;
- Ferris, Martin T.;
- Pardo-Manuel de Villena, Fernando;
- Heise, Mark T.;
- Baric, Ralph S.;
- Lund, Jennifer M.
Publication type:
Article
Large differences in collateral blood vessel abundance among individuals arise from multiple genetic variants.
Published in:
Journal of Cerebral Blood Flow & Metabolism, 2023, v. 43, n. 11, p. 1983, doi. 10.1177/0271678X231194956
By:
- Faber, James E;
- Zhang, Hua;
- Xenakis, James G;
- Bell, Timothy A;
- Hock, Pablo;
- Pardo-Manuel de Villena, Fernando;
- Ferris, Martin T;
- Rzechorzek, Wojciech
Publication type:
Article
Genetic basis of thermal nociceptive sensitivity and brain weight in a BALB/c reduced complexity cross.
Published in:
Molecular Pain, 2022, v. 18, p. 1, doi. 10.1177/17448069221079540
By:
- Beierle, Jacob A;
- Yao, Emily J;
- Goldstein, Stanley I;
- Scotellaro, Julia L;
- Sena, Katherine D;
- Linnertz, Colton A;
- Willits, Adam B;
- Kader, Leena;
- Young, Erin E;
- Peltz, Gary;
- Emili, Andrew;
- Ferris, Martin T;
- Bryant, Camron D
Publication type:
Article
The updated mouse universal genotyping array bioinformatic pipeline improves genetic QC in laboratory mice.
Published in:
G3: Genes | Genomes | Genetics, 2024, v. 14, n. 10, p. 1, doi. 10.1093/g3journal/jkae193
By:
- Blanchard, Matthew W;
- Sigmon, John Sebastian;
- Brennan, Jennifer;
- Ahulamibe, Chidima;
- Allen, Michelle E;
- Ardery, Sam;
- Baric, Ralph S;
- Bell, Timothy A;
- Farrington, Joseph;
- Ciavatta, Dominic;
- Cisneros, Marta C Cruz;
- Drushal, Madison;
- Ferris, Martin T;
- Fry, Rebecca C;
- Gaines, Christiann;
- Gu, Bin;
- Heise, Mark T;
- Hock, Pablo;
- Hodges, Richard Austin;
- Hulgin, Mia
Publication type:
Article
Whole Genome Sequencing and Progress Toward Full Inbreeding of the Mouse Collaborative Cross Population.
Published in:
G3: Genes | Genomes | Genetics, 2019, v. 9, n. 5, p. 1303, doi. 10.1534/g3.119.400039
By:
- Shorter, John R.;
- Najarian, Maya L.;
- Bell, Timothy A.;
- Blanchard, Matthew;
- Ferris, Martin T.;
- Hock, Pablo;
- Kashfeen, Anwica;
- Kirchoff, Kathryn E.;
- Linnertz, Colton L.;
- Sigmon, J. Sebastian;
- Miller, Darla R.;
- McMillan, Leonard;
- de Villena, Fernando Pardo-Manuel
Publication type:
Article
Bayesian Diallel Analysis Reveals Mx1-Dependent and Mx1-Independent Effects on Response to Influenza A Virus in Mice.
Published in:
G3: Genes | Genomes | Genetics, 2018, v. 8, n. 2, p. 427, doi. 10.1534/g3.117.300438
By:
- Maurizio, Paul L.;
- Ferris, Martin T.;
- Keele, Gregory R.;
- Miller, Darla R.;
- Shaw, Ginger D.;
- Whitmore, Alan C.;
- West, Ande;
- Morrison, Clayton R.;
- Noll, Kelsey E.;
- Plante, Kenneth S.;
- Cockrell, Adam S.;
- Threadgill, David W.;
- de Villena, Fernando Pardo-Manuel;
- Baric, Ralph S.;
- Heise, Mark T.;
- Valdar, William
Publication type:
Article
Oas1b-dependent Immune Transcriptional Profiles of West Nile Virus Infection in the Collaborative Cross.
Published in:
G3: Genes | Genomes | Genetics, 2017, v. 7, n. 6, p. 1665, doi. 10.1534/g3.117.041624
By:
- Green, Richard;
- Wilkins, Courtney;
- Thomas, Sunil;
- Sekine, Aimee;
- Hendrick, Duncan M.;
- Voss, Kathleen;
- Ireton, Renee C.;
- Mooney, Michael;
- Go, Jennifer T.;
- Choonoo, Gabrielle;
- Jeng, Sophia;
- de Villena, Fernando Pardo-Manuel;
- Ferris, Martin T.;
- McWeeney, Shannon;
- Gale Jr., Michael
Publication type:
Article
Allelic Variation in the Toll-Like Receptor Adaptor Protein Ticam2 Contributes to SARS-Coronavirus Pathogenesis in Mice.
Published in:
G3: Genes | Genomes | Genetics, 2017, v. 7, n. 6, p. 1653, doi. 10.1534/g3.117.041434
By:
- Gralinski, Lisa E.;
- Menachery, Vineet D.;
- Morgan, Andrew P.;
- Totura, Allison L.;
- Beall, Anne;
- Kocher, Jacob;
- Plante, Jessica;
- Harrison-Shostak, D. Corinne;
- Schäfer, Alexandra;
- de Villena, Fernando Pardo-Manuel;
- Ferris, Martin T.;
- Baric, Ralph S.
Publication type:
Article
The Mouse Universal Genotyping Array: From Substrains to Subspecies.
Published in:
G3: Genes | Genomes | Genetics, 2016, v. 6, n. 2, p. 263, doi. 10.1534/g3.115.022087
By:
- Morgan, Andrew P.;
- Fu, Chen-Ping;
- Kao, Chia-Yu;
- Welsh, Catherine E.;
- Didion, John P.;
- Yadgary, Liran;
- Hyacinth, Leeanna;
- Ferris, Martin T.;
- Bell, Timothy A.;
- Miller, Darla R.;
- Giusti-Rodriguez, Paola;
- Nonneman, Randal J.;
- Cook, Kevin D.;
- Whitmire, Jason K.;
- Gralinski, Lisa E.;
- Keller, Mark;
- Attie, Alan D.;
- Churchill, Gary A.;
- Petkov, Petko;
- Sullivan, Patrick F.
Publication type:
Article
A reduced complexity cross between BALB/c substrains identifies Zhx2 as a candidate gene underlying oxycodone metabolite brain concentration and state‐dependent learning of opioid reward.
Published in:
FASEB Journal, 2022, v. 36, p. N.PAG, doi. 10.1096/fasebj.2022.36.S1.R4573
By:
- Beierle, Jacob A.;
- Yao, Emily J.;
- Goldstein, Stan I.;
- Scotellaro, Julia L.;
- Sena, Katherine D.;
- Averin, Olga;
- Moody, David E.;
- Reilly, Christopher A.;
- Emili, Andrew;
- Peltz, Gary;
- Ferris, Martin T.;
- Bryant, Camron D.
Publication type:
Article
Fecal IgA, Antigen Absorption, and Gut Microbiome Composition Are Associated With Food Antigen Sensitization in Genetically Susceptible Mice.
Published in:
Frontiers in Immunology, 2021, v. 11, p. N.PAG, doi. 10.3389/fimmu.2020.599637
By:
- Smeekens, Johanna M.;
- Johnson-Weaver, Brandi T.;
- Hinton, Andrew L.;
- Azcarate-Peril, M. Andrea;
- Moran, Timothy P.;
- Immormino, Robert M.;
- Kesselring, Janelle R.;
- Steinbach, Erin C.;
- Orgel, Kelly A.;
- Staats, Herman F.;
- Burks, A. Wesley;
- Mucha, Peter J.;
- Ferris, Martin T.;
- Kulis, Michael D.
Publication type:
Article
U-CAN-seq: A Universal Competition Assay by Nanopore Sequencing.
Published in:
Viruses (1999-4915), 2024, v. 16, n. 4, p. 636, doi. 10.3390/v16040636
By:
- Diaz, Jennifer;
- Sears, John;
- Chang, Che-Kang;
- Burdick, Jane;
- Law, Isabella;
- Sanders, Wes;
- Linnertz, Colton;
- Sylvester, Paul;
- Moorman, Nathaniel;
- Ferris, Martin T.;
- Heise, Mark T.
Publication type:
Article
Multi-omics analysis identifies drivers of protein phosphorylation.
Published in:
Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02892-2
By:
- Zhang, Tian;
- Keele, Gregory R.;
- Gyuricza, Isabela Gerdes;
- Vincent, Matthew;
- Brunton, Catherine;
- Bell, Timothy A.;
- Hock, Pablo;
- Shaw, Ginger D.;
- Munger, Steven C.;
- de Villena, Fernando Pardo-Manuel;
- Ferris, Martin T.;
- Paulo, Joao A.;
- Gygi, Steven P.;
- Churchill, Gary A.
Publication type:
Article
Modeling Host Genetic Regulation of Influenza Pathogenesis in the Collaborative Cross.
Published in:
PLoS Pathogens, 2013, v. 9, n. 2, p. 1, doi. 10.1371/journal.ppat.1003196
By:
- Ferris, Martin T.;
- Aylor, David L.;
- Bottomly, Daniel;
- Whitmore, Alan C.;
- Aicher, Lauri D.;
- Bell, Timothy A.;
- Bradel-Tretheway, Birgit;
- Bryan, Janine T.;
- Buus, Ryan J.;
- Gralinski, Lisa E.;
- Haagmans, Bart L.;
- McMillan, Leonard;
- Miller, Darla R.;
- Rosenzweig, Elizabeth;
- Valdar, William;
- Wang, Jeremy;
- Churchill, Gary A.;
- Threadgill, David W.;
- McWeeney, Shannon K.;
- Katze, Michael G.
Publication type:
Article
A Mouse Model of Chronic West Nile Virus Disease.
Published in:
PLoS Pathogens, 2016, v. 12, n. 11, p. 1, doi. 10.1371/journal.ppat.1005996
By:
- Graham, Jessica B.;
- Swarts, Jessica L.;
- Wilkins, Courtney;
- Thomas, Sunil;
- Green, Richard;
- Sekine, Aimee;
- Voss, Kathleen M.;
- Ireton, Renee C.;
- Mooney, Michael;
- Choonoo, Gabrielle;
- Miller, Darla R.;
- Treuting, Piper M.;
- Pardo Manuel de Villena, Fernando;
- Ferris, Martin T.;
- McWeeney, Shannon;
- Jr.Gale, Michael;
- Lund, Jennifer M.
Publication type:
Article
Host genetic regulation of immune-based and infectious diseases.
Published in:
Mammalian Genome, 2018, v. 29, n. 7/8, p. 365, doi. 10.1007/s00335-018-9779-y
By:
- Ferris, Martin T.;
- Hood, Derek W.
Publication type:
Article
Genomes of the Mouse Collaborative Cross.
Published in:
Genetics, 2017, v. 206, n. 2, p. 537, doi. 10.1534/genetics.116.198838
By:
- Srivastava, Anuj;
- Morgan, Andrew P.;
- Najarian, Maya L.;
- Sarsani, Vishal Kumar;
- Sigmon, J. Sebastian;
- Shorter, John R.;
- Kashfeen, Anwica;
- McMullan, Rachel C.;
- Williams, Lucy H.;
- Giusti-Rodríguez, Paola;
- Ferris, Martin T.;
- Sullivan, Patrick;
- Hock, Pablo;
- Miller, Darla R.;
- Bell, Timothy A.;
- McMillan, Leonard;
- Churchill, Gary A.;
- de Villena, Fernando Pardo-Manuel
Publication type:
Article
Intestinal epithelial cell barrier dysfunction and elevated Angiopoietin‐like 4 identified in orally susceptible peanut allergy model.
Published in:
Clinical & Experimental Allergy, 2023, v. 53, n. 2, p. 210, doi. 10.1111/cea.14248
By:
- Steinbach, Erin C.;
- Smeekens, Johanna M.;
- Roy, Satyaki;
- Toyonaga, Takahiko;
- Cornaby, Caleb;
- Perini, Layna B.;
- Berglind, Ana E.;
- Kulis, Michael D.;
- Kim, Edwin H.;
- Ferris, Martin T.;
- Furey, Terrence S.;
- Burks, Arvil Wesley;
- Sheikh, Shehzad Z.
Publication type:
Article
Genome Wide Identification of SARS-CoV Susceptibility Loci Using the Collaborative Cross.
Published in:
PLoS Genetics, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pgen.1005504
By:
- Gralinski, Lisa E.;
- Ferris, Martin T.;
- Aylor, David L.;
- Whitmore, Alan C.;
- Green, Richard;
- Frieman, Matthew B.;
- Deming, Damon;
- Menachery, Vineet D.;
- Miller, Darla R.;
- Buus, Ryan J.;
- Bell, Timothy A.;
- Churchill, Gary A.;
- Threadgill, David W.;
- Katze, Michael G.;
- McMillan, Leonard;
- Valdar, William;
- Heise, Mark T.;
- Pardo-Manuel de Villena, Fernando;
- Baric, Ralph S.
Publication type:
Article
Immune Predictors of Mortality After Ribonucleic Acid Virus Infection.
Published in:
2020
By:
- Graham, Jessica B;
- Swarts, Jessica L;
- Menachery, Vineet D;
- Gralinski, Lisa E;
- Schäfer, Alexandra;
- Plante, Kenneth S;
- Morrison, Clayton R;
- Voss, Kathleen M;
- Green, Richard;
- Choonoo, Gabrielle;
- Jeng, Sophia;
- Miller, Darla R;
- Mooney, Michael A;
- McWeeney, Shannon K;
- Ferris, Martin T;
- Villena, Fernando Pardo-Manuel de;
- Gale, Michael;
- Heise, Mark T;
- Baric, Ralph S;
- Lund, Jennifer M
Publication type:
journal article
Forward genetic screen of homeostatic antibody levels in the Collaborative Cross identifies MBD1 as a novel regulator of B cell homeostasis.
Published in:
PLoS Genetics, 2022, v. 18, n. 12, p. 1, doi. 10.1371/journal.pgen.1010548
By:
- Hampton, Brea K.;
- Plante, Kenneth S.;
- Whitmore, Alan C.;
- Linnertz, Colton L.;
- Madden, Emily A.;
- Noll, Kelsey E.;
- Boyson, Samuel P.;
- Parotti, Breantie;
- Xenakis, James G.;
- Bell, Timothy A.;
- Hock, Pablo;
- Shaw, Ginger D.;
- de Villena, Fernando Pardo-Manuel;
- Ferris, Martin T.;
- Heise, Mark T.
Publication type:
Article
Broad Blockade Antibody Responses in Human Volunteers after Immunization with a Multivalent Norovirus VLP Candidate Vaccine: Immunological Analyses from a Phase I Clinical Trial.
Published in:
PLoS Medicine, 2015, v. 12, n. 3, p. 1, doi. 10.1371/journal.pmed.1001807
By:
- Lindesmith, Lisa C.;
- Ferris, Martin T.;
- Mullan, Clancy W.;
- Ferreira, Jennifer;
- Debbink, Kari;
- Swanstrom, Jesica;
- Richardson, Charles;
- Goodwin, Robert R.;
- Baehner, Frank;
- Mendelman, Paul M.;
- Bargatze, Robert F.;
- Baric, Ralph S.
Publication type:
Article
Beneficial Fitness Effects Are Not Exponential for Two Viruses.
Published in:
Journal of Molecular Evolution, 2008, v. 67, n. 4, p. 368, doi. 10.1007/s00239-008-9153-x
By:
- Rokyta, Darin R.;
- Beisel, Craig J.;
- Joyce, Paul;
- Ferris, Martin T.;
- Burch, Christina L.;
- Wichman, Holly A.
Publication type:
Article
Human ACE2 expression, a major tropism determinant for SARS-CoV-2, is regulated by upstream and intragenic elements.
Published in:
PLoS Pathogens, 2023, v. 18, n. 2, p. 1, doi. 10.1371/journal.ppat.1011168
By:
- Snouwaert, John N.;
- Jania, Leigh A.;
- Nguyen, Trang;
- Martinez, David R.;
- Schäfer, Alexandra;
- Catanzaro, Nicholas J.;
- Gully, Kendra L.;
- Baric, Ralph S.;
- Heise, Mark;
- Ferris, Martin T.;
- Anderson, Elizabeth;
- Pressey, Katia;
- Dillard, Jacob A.;
- Taft-Benz, Sharon;
- Baxter, Victoria K.;
- Ting, Jenny P-Y;
- Koller, Beverly H.
Publication type:
Article
Genetic diversity of collaborative cross mice enables identification of novel rift valley fever virus encephalitis model.
Published in:
PLoS Pathogens, 2022, v. 18, n. 7, p. 1, doi. 10.1371/journal.ppat.1010649
By:
- Cartwright, Haley N.;
- Barbeau, Dominique J.;
- Doyle, Joshua D.;
- Klein, Ed;
- Heise, Mark T.;
- Ferris, Martin T.;
- McElroy, Anita K.
Publication type:
Article

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