Works matching AU Fernando, Samodha

Results: 52

Predicting feed efficiency traits in beef cattle using genomics and rumen microbiomics.

Published in:

Journal of Animal Science, 2025, v. 103, p. 18, doi. 10.1093/jas/skaf102.020

By:

Lakamp, Drew;
Adams, Seidu;
Wells, James E.;
Snelling, Warren M.;
Kuehn, Larry A.;
Fernando, Samodha;
Spangler, Matthew L.

Publication type:

Article

Characterizing the Rumen Bacterial Community in Replacement Holstein Heifers with Divergent Genomically Enhanced Residual Feed Intake.

Published in:

Journal of Animal Science, 2023, v. 101, p. 286, doi. 10.1093/jas/skad281.342

By:

O'Reilly, Keara;
Carstens, Gordon E.;
Adams, Seidu;
Fernando, Samodha C.;
Johnson, Jocelyn R.;
Deeb, Nader

Publication type:

Article

Using a Novel Direct-Fed Microbial as an Alternative for Tylosin Phosphate to Control Liver Abscesses and Decrease Antimicrobial Use in Finishing Beef Steers.

Published in:

Journal of Animal Science, 2023, v. 101, p. 66, doi. 10.1093/jas/skad281.080

By:

Hoffman, Ashley A.;
Fernando, Samodha C.;
Wells, James E.;
Woerner, Dale R.;
Manahan, Jeff L.;
Long, Nathan S.;
McDaniel, Zach S.;
Smock, Taylor M.;
Line, Dalton J.;
Broadway, Paul R.;
Carroll, Jeffery A.;
Sanchez, Nicole C. Burdick;
Hales, Kristin E.

Publication type:

Article

Longitudinal Heritability of Ocular Microbiota in Preweaned Beef Cattle.

Published in:

Journal of Animal Science, 2023, v. 101, p. 30, doi. 10.1093/jas/skad281.037

By:

Lakamp, Drew;
Neujahr, Alison;
Hille, Matthew;
Loy, J. Dustin;
Fernando, Samodha C.;
Spangler, Matthew L.

Publication type:

Article

Microbiome Manipulation to Reduce Methane Emission in Beef Cattle.

Published in:

2023

By:

Doan, Tien;
Wilson, Hannah;
Kubwimana, Fiacre;
Neujahr, Alison;
Fernando, Samodha C.

Publication type:

Abstract

Investigating the Colonization History of Early-Life Microbiome of Piglets.

Published in:

2023

By:

Adams, Seidu;
Knapp, Josh P.;
Neujahr, Alison;
Burkey, Thomas;
Miller, Phillip S.;
Fernando, Samodha C.

Publication type:

Abstract

Microbiomes from Theory to Application.

Published in:

Journal of Animal Science, 2023, v. 101, p. 63, doi. 10.1093/jas/skad341.070

By:

Adams, Seidu;
Aluthge, Nirosh D.;
Abbas, Waseem;
Spangler, Matt L.;
James, Wells;
Hales, Kristen E.;
Kuehn, Larry A.;
Oliver, William T.;
Burkey, Thomas;
Miller, Phillip S.;
Fernando, Samodha C.

Publication type:

Article

Effect of fiber source and crude protein level on nursery pig performance and fecal microbial communities.

Published in:

Journal of Animal Science, 2021, v. 99, n. 12, p. 1, doi. 10.1093/jas/skab343

By:

Batson, Kelsey L.;
Neujahr, Alison C.;
Burkey, Thomas;
Fernando, Samodha C.;
Tokach, Mike D.;
Woodworth, Jason C.;
Goodband, Robert D.;
DeRouchey, Joel M.;
Gebhardt, Jordan T.;
Calderón, Hilda I.

Publication type:

Article

Effects of mannan oligosaccharides and Lactobacillus mucosae on growth performance, immune response, and gut health of weanling pigs challenged with Escherichia coli lipopolysaccharides.

Published in:

Journal of Animal Science, 2021, v. 99, n. 12, p. 1, doi. 10.1093/jas/skab286

By:

Li, Yanshuo S.;
San Andres, Joice V.;
Trenhaile-Grannemann, Melanie D.;
van Sambeek, Dana M.;
Moore, Kelly C.;
Winkel, Shana M.;
Fernando, Samodha C.;
Burkey, Thomas E.;
Miller, Phillip S.

Publication type:

Article

Effect of a Direct Fed Microbial Feed Additive on Finishing Beef Cattle Performance and Liver Abscess Rate.

Published in:

Journal of Animal Science, 2021, v. 99, p. 212, doi. 10.1093/jas/skab054.348

By:

Adair, Kelton;
Fernando, Samodha;
Erickson, Galen E.;
Bartenslager, Alison;
Carlson, Zachary E.

Publication type:

Article

The Effects of Lactobacillus Fermentum on Sow and Litter Performance.

Published in:

Journal of Animal Science, 2021, v. 99, p. 160, doi. 10.1093/jas/skab054.274

By:

Knapp, Josh K.;
Winkel, Shana M.;
Bartenslager, Alison;
Trenhaile-Grannemann, Melanie D.;
Andres, Joice V. San;
Khang Nguyen;
Wittler, J'Nan;
Kinstler, Sydney;
Fernando, Samodha;
Miller, Phillip;
Burkey, Thomas

Publication type:

Article

The Effects of Lactobacillus Fermentum on Nursery Pig Performance.

Published in:

Journal of Animal Science, 2021, v. 99, p. 159, doi. 10.1093/jas/skab054.273

By:

Knapp, Josh K.;
Bartenslager, Alison;
Winkel, Shana M.;
Trenhaile-Grannemann, Melanie D.;
Andres, Joice V. San;
Khang Nguyen;
Wittler, J'Nan;
Kinstler, Sydney;
Fernando, Samodha;
Miller, Phillip;
Burkey, Thomas

Publication type:

Article

Rumen epithelial transcriptome and microbiome profiles of rumen epithelium and contents of beef cattle with and without liver abscesses.

Published in:

Journal of Animal Science, 2020, v. 98, n. 12, p. 1, doi. 10.1093/jas/skaa359

By:

Abbas, Waseem;
Keel, Brittney N;
Kachman, Stephan D;
Fernando, Samodha C;
Wells, James E;
Hales, Kristin E;
Lindholm-Perry, Amanda K

Publication type:

Article

Effect of Dietary Nitrates and Sulfates on Enteric Methane Mitigation in Finishing Cattle.

Published in:

Journal of Animal Science, 2020, v. 98, p. 220, doi. 10.1093/jas/skaa054.384

By:

Abdelmoteleb, Mohamed;
Knoell, Allie;
Fernando, Samodha

Publication type:

Article

Effect of Green Grass supplementation of swine diet on pork quality characteristics.

Published in:

Journal of Animal Science, 2020, v. 98, p. 169, doi. 10.1093/jas/skaa054.301

By:

Furbeck, Rebecca;
Knapp, Josh P.;
Trenhaile-Grannemann, Melanie D.;
Burkey, Thomas;
Fernando, Samodha;
Sullivan, Gary;
Miller, Phillip

Publication type:

Article

Genome Centric Approaches to Understand Antimicrobial Resistance in the Rumen Microbiome.

Published in:

Journal of Animal Science, 2020, v. 98, p. 160, doi. 10.1093/jas/skaa054.283

By:

Tom, Wesley A.;
Hales, Kristin;
Wells, James;
Fernando, Samodha

Publication type:

Article

The effect of diet on the microbial community structure and composition in lactating Jersey cows consuming a mixture of straw and dry distillers grains plus solubles in replacement of alfalfa hay.

Published in:

Journal of Animal Science, 2020, v. 98, p. 138, doi. 10.1093/jas/skaa054.241

By:

Knoell, Allison;
Aluthge, Nirosh;
Abbas, Waseem;
Bartenslager, Alison;
Judy, Jared;
Morris, Dennis;
Wilson, Hannah C.;
Herrick, Kevin;
Kononoff, Paul J.;
Fernando, Samodha

Publication type:

Article

Epimural microbiota and rumen epithelial gene expression in healthy and liver-abscessed animals.

Published in:

Journal of Animal Science, 2020, v. 98, p. 135, doi. 10.1093/jas/skaa054.234

By:

Abbas, Waseem;
Lindholm-Perry, Amanda K.;
Keel, Brittney N.;
Wells, James E.;
Hales, Kristin;
Knoell, Allison;
Paz, Henry A.;
Fernando, Samodha

Publication type:

Article

Resilience of the ocular microbiome in beef calves.

Published in:

2020

By:

Bartenslager, Alison;
Aluthge, Nirosh;
Loy, John;
Spangler, Matthew;
Fernando, Samodha

Publication type:

Abstract

Effect of dietary medium-chain fatty acids on nursery pig growth performance, fecal microbial composition, and mitigation properties against porcine epidemic diarrhea virus following storage.

Published in:

Journal of Animal Science, 2020, v. 98, n. 1, p. 1, doi. 10.1093/jas/skz358

By:

Gebhardt, Jordan T.;
Thomson, Katelyn A.;
Woodworth, Jason C.;
Dritz, Steve S.;
Tokach, Michael D.;
DeRouchey, Joel M.;
Goodband, Robert D.;
Jones, Cassandra K.;
Cochrane, Roger A.;
Niederwerder, Megan C.;
Fernando, Samodha;
Abbas, Waseem;
Burkey, Thomas E.

Publication type:

Article

BOARD INVITED REVIEW: The pig microbiota and the potential for harnessing the power of the microbiome to improve growth and health.

Published in:

Journal of Animal Science, 2019, v. 97, n. 9, p. 3741, doi. 10.1093/jas/skz208

By:

Aluthge, Nirosh D;
Sambeek, Dana M Van;
Carney-Hinkle, Erin E;
Li, Yanshuo S;
Fernando, Samodha C;
Burkey, Thomas E

Publication type:

Article

93 Host genetics help shape the rumen microbiome in beef cattle.

Published in:

Journal of Animal Science, 2019, v. 97, p. 51, doi. 10.1093/jas/skz122.093

By:

Abbas, Waseem;
Howard, Jeremy T;
Paz, Henry A;
Hales, Kristin E;
Wells, James E;
Kuehn, Larry A;
Spangler, Matthew L;
Erickson, Galen E;
Fernando, Samodha C

Publication type:

Article

196 Direct comparison of human microbiota-associated (HMA) gnotobiotic piglet and mouse models.

Published in:

Journal of Animal Science, 2019, v. 97, p. 114, doi. 10.1093/jas/skz122.203

By:

Aluthge, Nirosh D;
Tom, Wesley A;
Bartenslager, Alison C;
Burkey, Thomas E;
Heath, Kelly D;
Kreikemeier-Bower, Craig;
Kittana, Hatem;
Ramer-Tait, Amanda E;
Fernando, Samodha C

Publication type:

Article

151 Effects of carbohydrate source on performance and gastrointestinal microbiota in nursery pigs.

Published in:

Journal of Animal Science, 2019, v. 97, p. 86, doi. 10.1093/jas/skz122.156

By:

Kinstler, Sydney;
Li, Yanshao;
Miller, Phillip;
Burkey, Thomas E;
Trenhaile-Gannemann, Melanie;
Fernando, Samodha C;
Knoell, Allison;
Tom, Wesley A

Publication type:

Article

BIG DATA ANALYTICS AND PRECISION ANIMAL AGRICULTURE SYMPOSIUM: Machine learning and data mining advance predictive big data analysis in precision animal agriculture.

Published in:

Journal of Animal Science, 2018, v. 96, n. 4, p. 1540, doi. 10.1093/jas/sky014

By:

Morota, Gota;
Ventura, Ricardo V;
Silva, Fabyano F;
Koyama, Masanori;
Fernando, Samodha C

Publication type:

Article

Rumen bacterial community structure impacts feed efficiency in beef cattle.

Published in:

Journal of Animal Science, 2018, v. 96, n. 3, p. 1045, doi. 10.1093/jas/skx081

By:

Paz, Henry A;
Hales, Kristin E;
Wells, James E;
Kuehn, Larry A;
Freetly, Harvey C;
Berry, Elaine D;
Flythe, Michael D;
Spangler, Matthew L;
Fernando, Samodha C

Publication type:

Article

Effects of spray-dried porcine plasma on fecal microbiota in nursery pigs.

Published in:

Journal of Animal Science, 2018, v. 96, n. 3, p. 1017, doi. 10.1093/jas/skx034

By:

Tran, Huyen;
Anderson, Christopher L;
Bundy, Justin W;
Fernando, Samodha C;
Miller, Phillip S;
Burkey, Thomas E

Publication type:

Article

Insights into rumen microbial biosynthetic gene cluster diversity through genome-resolved metagenomics.

Published in:

Communications Biology, 2021, v. 4, p. 1, doi. 10.1038/s42003-021-02331-7

By:

Anderson, Christopher L.;
Fernando, Samodha C.

Publication type:

Article

Differential longitudinal establishment of human fecal bacterial communities in germ-free porcine and murine models.

Published in:

Communications Biology, 2020, v. 3, n. 1, p. 1, doi. 10.1038/s42003-020-01477-0

By:

Aluthge, Nirosh D.;
Tom, Wesley A.;
Bartenslager, Alison C.;
Burkey, Thomas E.;
Miller, Phillip S.;
Heath, Kelly D.;
Kreikemeier-Bower, Craig;
Kittana, Hatem;
Schmaltz, Robert J.;
Ramer-Tait, Amanda E.;
Fernando, Samodha C.

Publication type:

Article

Employing Respondent Driven Sampling (RDS) to recruit people who inject drugs (PWID) and other hard-to-reach populations during COVID-19: Lessons learned.

Published in:

Frontiers in Psychiatry, 2022, v. 13, p. 01, doi. 10.3389/fpsyt.2022.990055

By:

Abadie, Roberto;
Habecker, Patrick;
Gocchi Carrasco, Kimberly;
Chiou, Kathy S.;
Fernando, Samodha;
Bennett, Sydney J.;
Valentin-Acevedo, Aníbal;
Dombrowski, Kirk;
West, John T.;
Wood, Charles

Publication type:

Article

The persistence and stabilization of auxiliary genes in the human skin virome.

Published in:

Virology Journal, 2023, v. 20, n. 1, p. 1, doi. 10.1186/s12985-023-02012-3

By:

Graham, Ema H.;
Tom, Wesley A.;
Neujahr, Alison C.;
Adamowicz, Michael S.;
Clarke, Jennifer L.;
Herr, Joshua R.;
Fernando, Samodha C.

Publication type:

Article

Fowlicidin-3 is an α-helical cationic host defense peptide with potent antibacterial and lipopolysaccharide-neutralizing activities.

Published in:

FEBS Journal, 2007, v. 274, n. 2, p. 418, doi. 10.1111/j.1742-4658.2006.05589.x

By:

Bommineni, Yugendar R.;
Huaien Dai;
Yu-Xi Gong;
Soulages, Jose L.;
Fernando, Samodha C.;
DeSilva, Udaya;
Prakash, Om;
Zhang, Guolong

Publication type:

Article

29 Human Immunodeficiency Virus (HIV) Status, Injection Drug Use, and Cognitive Effects in a Spanish-Speaking Population.

Published in:

2023

By:

Snyder, Rachael L.;
Miller, Alec J.;
Feiger, Jeremy A.;
Davila, Carmen A.;
Carrasco, Kim G.;
Dombrowski, Kirk;
Abadie, Roberto;
Valentin, Anibal;
Fernando, Samodha;
West, John T.;
Wood, Charles;
Bennett, Sydney J.;
Chiou, Kathy S.

Publication type:

Abstract

56 Cognitive Intra-Individual Variability Profiles of a Spanish Speaking Population Living with HIV and Injection Drug Use.

Published in:

2023

By:

Feiger, Jeremy A;
Snyder, Rachael L.;
Miller, Alec J;
Davila, Carmen A;
Carrasco, Kim G;
Dombrowski, Kirk;
Abadie, Roberto;
Valentin, Anibal;
Fernando, Samodha;
West, John T;
Wood, Charles;
Bennett, Sydney J;
Chiou, Kathy S

Publication type:

Abstract

Immune profiling in Puerto Rican injection drug users with and without HIV-1 infection.

Published in:

Journal of Leukocyte Biology, 2023, v. 114, n. 2, p. 142, doi. 10.1093/jleuko/qiad045

By:

Bennett, Sydney J;
Davila, Carmen Ana;
Reyes, Zahiraliz;
Valentín-Acevedo, Aníbal;
Gocchi Carrasco, Kim;
Abadie, Roberto;
Marlin, M Caleb;
Beel, Marci;
Chapple, Andrew G;
Fernando, Samodha;
Guthridge, Joel M;
Chiou, Kathy S;
Dombrowski, Kirk;
West, John T;
Wood, Charles

Publication type:

Article

Metaphylactic antimicrobial effects on occurrences of antimicrobial resistance in Salmonella enterica, Escherichia coli and Enterococcus spp. measured longitudinally from feedlot arrival to harvest in high‐risk beef cattle.

Published in:

Journal of Applied Microbiology, 2022, v. 133, n. 3, p. 1940, doi. 10.1111/jam.15691

By:

Long, Nathan S.;
Wells, James E.;
Berry, Elaine D.;
Legako, Jerrad F.;
Woerner, Dale R.;
Loneragan, Guy H.;
Broadway, Paul R.;
Carroll, Jeff A.;
Sanchez, Nicole C. Burdick;
Fernando, Samodha C.;
Bacon, Carley M.;
Helmuth, Cory L.;
Smock, Taylor M.;
Manahan, Jeff L.;
Hoffman, Ashley A.;
Hales, Kristin E.

Publication type:

Article

Rapid detection of high consequence and emerging viral pathogens in pigs.

Published in:

Frontiers in Veterinary Science, 2024, p. 1, doi. 10.3389/fvets.2024.1341783

By:

Neujahr, Alison C.;
Loy, Duan S.;
Loy, John Dustin;
Brodersen, Bruce W.;
Fernando, Samodha C.

Publication type:

Article

Rumen Bacterial Community Composition in Holstein and Jersey Cows Is Different under Same Dietary Condition and Is Not Affected by Sampling Method.

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.01206

By:

Paz, Henry A.;
Anderson, Christopher L.;
Muller, Makala J.;
Kononoff, Paul J.;
Fernando, Samodha C.;
Piao, Hailan;
Hackmann, Timothy

Publication type:

Article

Microbial diversity and activity in the Nematostella vectensis holobiont: insights from 16S rRNA gene sequencing, isolate genomes, and a pilot-scale survey of gene expression.

Published in:

Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00818

By:

Har, Jia Y.;
Helbig, Tim;
Lim, Ju H.;
Fernando, Samodha C.;
Reitzel, Adam M.;
Penn, Kevin;
Thompson, Janelle R.

Publication type:

Article

Microbial diversity and activity in the Nematostella vectensis holobiont: insights from 16S rRNA gene sequencing, isolate genomes, and a pilot-scale survey of gene expression.

Published in:

Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00818

By:

Jia Yi Har;
Tim Helbig;
Ju Hyoung Lim;
Fernando, Samodha C.;
Penn, Adam M.;
Penn, Kevin;
Thompson, Janelle R.

Publication type:

Article

Secondary metabolite gene expression and interplay of bacterial functions in a tropical freshwater cyanobacterial bloom.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 9, p. 1866, doi. 10.1038/ismej.2014.27

By:

Penn, Kevin;
Wang, Jia;
Fernando, Samodha C;
Thompson, Janelle R

Publication type:

Article

The effects of administering different metaphylactic antimicrobials on growth performance and health outcomes of high-risk, newly received feedlot steers.

Published in:

Translational Animal Science, 2022, v. 6, n. 4, p. 1, doi. 10.1093/tas/txac140

By:

Coppin, Carley M;
Smock, Taylor M;
Helmuth, Cory L;
Manahan, Jeff L;
Long, Nathan S;
Hoffman, Ashley A;
Carroll, Jeffrey A;
Broadway, Paul R;
Sanchez, Nicole C Burdick;
Wells, James E;
Fernando, Samodha C;
Hales, Kristin E

Publication type:

Article

Evaluation of methane production manipulated by level of intake in growing cattle and corn oil in finishing cattle.

Published in:

Translational Animal Science, 2020, v. 4, n. 4, p. 1, doi. 10.1093/tas/txaa186

By:

Winders, Tommy M;
Boyd, Bradley M;
Hilscher, F Henry;
Stowell, Rick R;
Fernando, Samodha C;
Erickson, Galen E

Publication type:

Article

Epstein‐Barr virus‐immortalized B lymphocytes exacerbate experimental autoimmune encephalomyelitis in xenograft mice.

Published in:

Journal of Medical Virology, 2021, v. 93, n. 6, p. 3813, doi. 10.1002/jmv.26188

By:

Polepole, Pascal;
Bartenslager, Alison;
Liu, Yutong;
Petro, Thomas M.;
Fernando, Samodha;
Zhang, Luwen

Publication type:

Article

Microbiota of the Major South Atlantic Reef Building Coral Mussismilia.

Published in:

Microbial Ecology, 2015, v. 69, n. 2, p. 267, doi. 10.1007/s00248-014-0474-6

By:

Fernando, Samodha;
Wang, Jia;
Sparling, Kimberly;
Garcia, Gizele;
Francini-Filho, Ronaldo;
Moura, Rodrigo;
Paranhos, Rodolfo;
Thompson, Fabiano;
Thompson, Janelle

Publication type:

Article

Dietary energy drives the dynamic response of bovine rumen viral communities.

Published in:

Microbiome, 2017, v. 5, p. 1, doi. 10.1186/s40168-017-0374-3

By:

Anderson, Christopher L.;
Sullivan, Matthew B.;
Fernando, Samodha C.

Publication type:

Article

Gut microbiota profiling in injection drug users with and without HIV-1 infection in Puerto Rico.

Published in:

Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2024.1470037

By:

Aluthge, Nirosh;
Adams, Seidu;
Davila, Carmen A.;
Gocchi Carrasco, Nova R.;
Chiou, Kathy S.;
Abadie, Roberto;
Bennett, Sydney J.;
Dombrowski, Kirk;
Major, Angel M.;
Valentín-Acevedo, Aníbal;
West, John T.;
Wood, Charles;
Fernando, Samodha C.

Publication type:

Article

Gut microbiota profiling in injection drug users with and without HIV-1 infection in Puerto Rico.

Published in:

Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2024.1470037

By:

Aluthge, Nirosh;
Adams, Seidu;
Davila, Carmen A.;
Gocchi Carrasco, Nova R.;
Chiou, Kathy S.;
Abadie, Roberto;
Bennett, Sydney J.;
Dombrowski, Kirk;
Major, Angel M.;
Valentín-Acevedo, Aníbal;
West, John T.;
Wood, Charles;
Fernando, Samodha C.

Publication type:

Article

Influence of host genetics in shaping the rumen bacterial community in beef cattle.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-72011-9

By:

Abbas, Waseem;
Howard, Jeremy T.;
Paz, Henry A.;
Hales, Kristin E.;
Wells, James E.;
Kuehn, Larry A.;
Erickson, Galen E.;
Spangler, Matthew L.;
Fernando, Samodha C.

Publication type:

Article

Fecal Microbiota Transplantation Is Associated With Reduced Morbidity and Mortality in Porcine Circovirus Associated Disease.

Published in:

Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.01631

By:

Niederwerder, Megan C.;
Constance, Laura A.;
Rowland, Raymond R. R.;
Abbas, Waseem;
Fernando, Samodha C.;
Potter, Megan L.;
Sheahan, Maureen A.;
Burkey, Thomas E.;
Hesse, Richard A.;
Cino-Ozuna, Ada G.

Publication type:

Article