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Precision pharmacological reversal of strain-specific diet-induced metabolic syndrome in mice informed by epigenetic and transcriptional regulation.
- Published in:
- PLoS Genetics, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pgen.1010997
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- Publication type:
- Article
Refining risk estimates for lead in drinking water based on the impact of genetics and diet on blood lead levels using the Collaborative Cross mouse population.
- Published in:
- Toxicological Sciences, 2023, v. 194, n. 2, p. 226, doi. 10.1093/toxsci/kfad054
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- Publication type:
- Article
DNA methylation entropy is associated with DNA sequence features and developmental epigenetic divergence.
- Published in:
- Nucleic Acids Research, 2023, v. 51, n. 5, p. 2046, doi. 10.1093/nar/gkad050
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- Publication type:
- Article
Autism-Associated DNA Methylation at Birth From Multiple Tissues Is Enriched for Autism Genes in the Early Autism Risk Longitudinal Investigation.
- Published in:
- Frontiers in Molecular Neuroscience, 2021, v. 14, p. 1, doi. 10.3389/fnmol.2021.775390
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- Publication type:
- Article
Estimating DNA methylation potential energy landscapes from nanopore sequencing data.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-00781-x
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- Publication type:
- Article
Human brain region-specific variably methylated regions are enriched for heritability of distinct neuropsychiatric traits.
- Published in:
- Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02335-w
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- Publication type:
- Article
Independent Methylome-Wide Association Studies of Schizophrenia Detect Consistent Case–Control Differences.
- Published in:
- Schizophrenia Bulletin, 2020, v. 46, n. 2, p. 319, doi. 10.1093/schbul/sbz056
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- Publication type:
- Article
Analyzing whole genome bisulfite sequencing data from highly divergent genotypes.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. 19, p. e117, doi. 10.1093/nar/gkz674
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- Publication type:
- Article
Ranking genomic features using an information-theoretic measure of epigenetic discordance.
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- BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-2777-6
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- Publication type:
- Article
Arioc: GPU-accelerated alignment of short bisulfite-treated reads.
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- Bioinformatics, 2018, v. 34, n. 15, p. 2673, doi. 10.1093/bioinformatics/bty167
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- Publication type:
- Article
Case-control meta-analysis of blood DNA methylation and autism spectrum disorder.
- Published in:
- Molecular Autism, 2018, v. 9, n. 1, p. N.PAG, doi. 10.1186/s13229-018-0224-6
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- Publication type:
- Article
An information-theoretic approach to the modeling and analysis of whole-genome bisulfite sequencing data.
- Published in:
- BMC Bioinformatics, 2018, v. 19, p. 1, doi. 10.1186/s12859-018-2086-5
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- Publication type:
- Article
Improving Metabolic Health Through Precision Dietetics in Mice.
- Published in:
- Genetics, 2018, v. 208, n. 1, p. 399, doi. 10.1534/genetics.117.300536
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- Publication type:
- Article
Cross-tissue integration of genetic and epigenetic data offers insight into autism spectrum disorder.
- Published in:
- Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-00868-y
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- Publication type:
- Article
DNA methylation mediates genotype and smoking interaction in the development of anti-citrullinated peptide antibody-positive rheumatoid arthritis.
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- Arthritis Research & Therapy, 2017, v. 19, p. 1, doi. 10.1186/s13075-017-1276-2
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- Publication type:
- Article
"Gap hunting" to characterize clustered probe signals in Illumina methylation array data.
- Published in:
- Epigenetics & Chromatin, 2016, v. 9, p. 1, doi. 10.1186/s13072-016-0107-z
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- Publication type:
- Article
High-specificity bioinformatics framework for epigenomic profiling of discordant twins reveals specific and shared markers for ACPA and ACPA-positive rheumatoid arthritis.
- Published in:
- Genome Medicine, 2016, v. 8, p. 1, doi. 10.1186/s13073-016-0374-0
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- Publication type:
- Article
DNA methylation is stable during replication and cell cycle arrest.
- Published in:
- Scientific Reports, 2015, p. 17911, doi. 10.1038/srep17911
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- Publication type:
- Article
An LSC epigenetic signature is largely mutation independent and implicates the HOXA cluster in AML pathogenesis.
- Published in:
- Nature Communications, 2015, v. 6, n. 10, p. 8489, doi. 10.1038/ncomms9489
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- Publication type:
- Article
Epigenetics at the Crossroads of Genes and the Environment.
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- 2015
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- Publication type:
- journal article
Paternal sperm DNA methylation associated with early signs of autism risk in an autism-enriched cohort.
- Published in:
- 2015
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- Publication type:
- journal article
Prenatal mercury concentration is associated with changes in DNA methylation at TCEANC2 in newborns.
- Published in:
- 2015
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- Publication type:
- journal article
Age and sun exposure-related widespread genomic blocks of hypomethylation in nonmalignant skin.
- Published in:
- Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0644-y
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- Publication type:
- Article
DNA methylation age of blood predicts all-cause mortality in later life.
- Published in:
- Genome Biology, 2015, v. 16, n. 1, p. 345, doi. 10.1186/s13059-015-0584-6
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- Publication type:
- Article
Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.
- Published in:
- Bioinformatics, 2014, v. 30, n. 10, p. 1363, doi. 10.1093/bioinformatics/btu049
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- Publication type:
- Article
Measuring cell-type specific differential methylation in human brain tissue.
- Published in:
- Genome Biology, 2013, v. 14, n. 8, p. R94, doi. 10.1186/gb-2013-14-8-r94
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- Publication type:
- Article
Cancer as a dysregulated epigenome allowing cellular growth advantage at the expense of the host.
- Published in:
- Nature Reviews Cancer, 2013, v. 13, n. 7, p. 497, doi. 10.1038/nrc3486
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- Publication type:
- Article
Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis.
- Published in:
- Nature Biotechnology, 2013, v. 31, n. 2, p. 142, doi. 10.1038/nbt.2487
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- Publication type:
- Article
A third-generation method reveals cell lineage ancestry.
- Published in:
- Nature Methods, 2013, v. 10, n. 2, p. 117, doi. 10.1038/nmeth.2338
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- Publication type:
- Article
Reversible switching between epigenetic states in honeybee behavioral subcastes.
- Published in:
- Nature Neuroscience, 2012, v. 15, n. 10, p. 1371, doi. 10.1038/nn.3218
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- Publication type:
- Article
Genome-Wide DNA Methylation Scan in Major Depressive Disorder.
- Published in:
- PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0034451
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- Publication type:
- Article
DNA methylation shows genome-wide association of NFIX, RAPGEF2 and MSRB3 with gestational age at birth.
- Published in:
- International Journal of Epidemiology, 2012, v. 41, n. 1, p. 188, doi. 10.1093/ije/dyr237
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- Publication type:
- Article
Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies.
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- International Journal of Epidemiology, 2012, v. 41, n. 1, p. 200, doi. 10.1093/ije/dyr238
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- Publication type:
- Article
Significance analysis and statistical dissection of variably methylated regions.
- Published in:
- Biostatistics, 2012, v. 13, n. 1, p. 166, doi. 10.1093/biostatistics/kxr013
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- Publication type:
- Article
Euchromatin islands in large heterochromatin domains are enriched for CTCF binding and differentially DNA-methylated regions.
- Published in:
- BMC Genomics, 2012, v. 13, n. 1, p. 566, doi. 10.1186/1471-2164-13-566
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- Publication type:
- Article
Erratum: Donor cell type can influence the epigenome and differentiation potential of human induced pluripotent stem cells.
- Published in:
- 2012
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- Publication type:
- Correction notice
Donor cell type can influence the epigenome and differentiation potential of human induced pluripotent stem cells.
- Published in:
- Nature Biotechnology, 2011, v. 29, n. 12, p. 1117, doi. 10.1038/nbt.2052
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- Publication type:
- Article
Increased methylation variation in epigenetic domains across cancer types.
- Published in:
- Nature Genetics, 2011, v. 43, n. 8, p. 768, doi. 10.1038/ng.865
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- Publication type:
- Article
Genome-scale epigenetic reprogramming during epithelial-to-mesenchymal transition.
- Published in:
- Nature Structural & Molecular Biology, 2011, v. 18, n. 8, p. 867, doi. 10.1038/nsmb.2084
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- Publication type:
- Article
Accurate genome-scale percentage DNA methylation estimates from microarray data.
- Published in:
- Biostatistics, 2011, v. 12, n. 2, p. 197, doi. 10.1093/biostatistics/kxq055
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- Publication type:
- Article
Epigenomics reveals a functional genome anatomy and a new approach to common disease.
- Published in:
- 2010
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- Publication type:
- Opinion
Comprehensive methylome map of lineage commitment from haematopoietic progenitors.
- Published in:
- Nature, 2010, v. 467, n. 7313, p. 338, doi. 10.1038/nature09367
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- Publication type:
- Article
Personalized Epigenomic Signatures That Are Stable Over Time and Covary with Body Mass Index.
- Published in:
- Science Translational Medicine, 2010, v. 2, n. 49, p. 1, doi. 10.1126/scitranslmed.3001262
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- Publication type:
- Article
Redefining CpG islands using hidden Markov models.
- Published in:
- Biostatistics, 2010, v. 11, n. 3, p. 499, doi. 10.1093/biostatistics/kxq005
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- Publication type:
- Article
Reply to “Reassessing the abundance of H3K9me2 chromatin domains in embryonic stem cells”.
- Published in:
- 2010
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- Publication type:
- Letter
Differential methylation of tissue- and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts.
- Published in:
- Nature Genetics, 2009, v. 41, n. 12, p. 1350, doi. 10.1038/ng.471
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- Publication type:
- Article
A species-generalized probabilistic model-based definition of CpG islands.
- Published in:
- Mammalian Genome, 2009, v. 20, n. 9/10, p. 674, doi. 10.1007/s00335-009-9222-5
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- Publication type:
- Article
The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores.
- Published in:
- Nature Genetics, 2009, v. 41, n. 2, p. 178, doi. 10.1038/ng.298
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- Publication type:
- Article
Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells.
- Published in:
- Nature Genetics, 2009, v. 41, n. 2, p. 246, doi. 10.1038/ng.297
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- Publication type:
- Article
Moving AHEAD with an international human epigenome project.
- Published in:
- Nature, 2008, v. 454, n. 7205, p. 711, doi. 10.1038/454711a
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- Publication type:
- Article