Works by Fargo, David C

Results: 17

Tracking replication enzymology in vivo by genome-wide mapping of ribonucleotide incorporation.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 3, p. 185, doi. 10.1038/nsmb.2957

By:

Clausen, Anders R;
Lujan, Scott A;
Burkholder, Adam B;
Orebaugh, Clinton D;
Williams, Jessica S;
Clausen, Maryam F;
Malc, Ewa P;
Mieczkowski, Piotr A;
Fargo, David C;
Smith, Duncan J;
Kunkel, Thomas A

Publication type:

Article

An APOBEC3A hypermutation signature is distinguishable from the signature of background mutagenesis by APOBEC3B in human cancers.

Published in:

Nature Genetics, 2015, v. 47, n. 9, p. 1067, doi. 10.1038/ng.3378

By:

Sterling, Joan F;
Malc, Ewa P;
Fargo, David C;
Mieczkowski, Piotr A;
Kwiatkowski, David J;
Saini, Natalie;
Kim, Jaegil;
Roberts, Steven A;
Getz, Gad;
Chan, Kin;
Gordenin, Dmitry A;
Klimczak, Leszek J

Publication type:

Article

Race/ethnicity-stratified fine-mapping of the MHC locus reveals genetic variants associated with late-onset asthma.

Published in:

Frontiers in Genetics, 2023, p. 1, doi. 10.3389/fgene.2023.1173676

By:

Lee, Eunice Y.;
Wonson Choi;
Burkholder, Adam B.;
Perera, Lalith;
Mack, Jasmine A.;
Miller, Frederick W.;
Fessler, Michael B.;
Cook, Donald N.;
Karmaus, Peer W. F.;
Hideki Nakano;
Garantziotis, Stavros;
Madenspacher, Jennifer H.;
House, John S.;
Akhtari, Farida S.;
Schmitt, Charles S.;
Fargo, David C.;
Hall, Janet E.;
Motsinger-Reif, Alison A.

Publication type:

Article

Methionine metabolism is essential for SIRT1-regulated mouse embryonic stem cell maintenance and embryonic development.

Published in:

EMBO Journal, 2017, v. 36, n. 21, p. 3175, doi. 10.15252/embj.201796708

By:

Tang, Shuang;
Fang, Yi;
Huang, Gang;
Xu, Xiaojiang;
Padilla‐Banks, Elizabeth;
Fan, Wei;
Xu, Qing;
Sanderson, Sydney M;
Foley, Julie F;
Dowdy, Scotty;
McBurney, Michael W;
Fargo, David C;
Williams, Carmen J;
Locasale, Jason W;
Guan, Ziqiang;
Li, Xiaoling

Publication type:

Article

UV-exposure, endogenous DNA damage, and DNA replication errors shape the spectra of genome changes in human skin.

Published in:

PLoS Genetics, 2021, v. 17, n. 1, p. 1, doi. 10.1371/journal.pgen.1009302

By:

Saini, Natalie;
Giacobone, Camille K.;
Klimczak, Leszek J.;
Papas, Brian N.;
Burkholder, Adam B.;
Li, Jian-Liang;
Fargo, David C.;
Bai, Re;
Gerrish, Kevin;
Innes, Cynthia L.;
Schurman, Shepherd H.;
Gordenin, Dmitry A.

Publication type:

Article

The Impact of Environmental and Endogenous Damage on Somatic Mutation Load in Human Skin Fibroblasts.

Published in:

PLoS Genetics, 2016, v. 12, n. 10, p. 1, doi. 10.1371/journal.pgen.1006385

By:

Saini, Natalie;
Roberts, Steven A.;
Klimczak, Leszek J.;
Chan, Kin;
Grimm, Sara A.;
Dai, Shuangshuang;
Fargo, David C.;
Boyer, Jayne C.;
Kaufmann, William K.;
Taylor, Jack A.;
Lee, Eunjung;
Cortes-Ciriano, Isidro;
Park, Peter J.;
Schurman, Shepherd H.;
Malc, Ewa P.;
Mieczkowski, Piotr A.;
Gordenin, Dmitry A.

Publication type:

Article

Downstream Antisense Transcription Predicts Genomic Features That Define the Specific Chromatin Environment at Mammalian Promoters.

Published in:

PLoS Genetics, 2016, v. 12, n. 8, p. 1, doi. 10.1371/journal.pgen.1006224

By:

Lavender, Christopher A.;
Cannady, Kimberly R.;
Hoffman, Jackson A.;
Trotter, Kevin W.;
Gilchrist, Daniel A.;
Bennett, Brian D.;
Burkholder, Adam B.;
Burd, Craig J.;
Fargo, David C.;
Archer, Trevor K.

Publication type:

Article

Rapid activity-induced transcription of Arc and other IEGs relies on poised RNA polymerase II.

Published in:

Nature Neuroscience, 2011, v. 14, n. 7, p. 848, doi. 10.1038/nn.2839

By:

Saha, Ramendra N.;
Wissink, Erin M.;
Bailey, Emma R.;
Zhao, Meilan;
Fargo, David C.;
Hwang, Ji-Yeon;
Daigle, Kelly R.;
Fenn, J Daniel;
Adelman, Karen;
Dudek, Serena M.

Publication type:

Article

Posttranscriptional Regulation of Cell-Cell Interaction Protein-Encoding Transcripts by Zfs1p in Schizosaccharomyces pombe.

Published in:

Molecular & Cellular Biology, 2012, v. 32, n. 20, p. 4206, doi. 10.1128/MCB.00325-12

By:

Wells, Melissa L.;
Huang, Weichun;
Li, Leping;
Gerrish, Kevin E.;
Fargo, David C.;
Ozsolak, Fatih;
Blackshear, Perry J.

Publication type:

Article

The phosphorylation status of T522 modulates tissue-specific functions of SIRT1 in energy metabolism in mice.

Published in:

EMBO Reports, 2017, v. 18, n. 5, p. 841, doi. 10.15252/embr.201643803

By:

Lu, Jing;
Xu, Qing;
Ji, Ming;
Guo, Xiumei;
Xu, Xiaojiang;
Fargo, David C;
Li, Xiaoling

Publication type:

Article

Post-transcriptional regulation of transcript abundance by a conserved member of the tristetraprolin family in C andida albicans.

Published in:

Molecular Microbiology, 2015, v. 95, n. 6, p. 1036, doi. 10.1111/mmi.12913

By:

Wells, Melissa L.;
Washington, Onica L.;
Hicks, Stephanie N.;
Nobile, Clarissa J.;
Hartooni, Nairi;
Wilson, Gerald M.;
Zucconi, Beth E.;
Huang, Weichun;
Li, Leping;
Fargo, David C.;
Blackshear, Perry J.

Publication type:

Article

Revealing a human p53 universe.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 16, p. 8153, doi. 10.1093/nar/gky720

By:

Nguyen, Thuy-Ai T;
Grimm, Sara A;
Bushel, Pierre R;
Li, Jianying;
Li, Yuanyuan;
Bennett, Brian D;
Lavender, Christopher A;
Ward, James M;
Fargo, David C;
Anderson, Carl W

Publication type:

Article

A Novel Analytical Strategy to Identify Fusion Transcripts between Repetitive Elements and Protein Coding-Exons Using RNA-Seq.

Published in:

PLoS ONE, 2016, v. 11, n. 7, p. 1, doi. 10.1371/journal.pone.0159028

By:

Wang, Tianyuan;
Santos, Janine H.;
Feng, Jian;
Fargo, David C.;
Shen, Li;
Riadi, Gonzalo;
Keeley, Elizabeth;
Rosh, Zachary S.;
Nestler, Eric J.;
Woychik, Richard P.

Publication type:

Article

Questionnaire-Based Polyexposure Assessment Outperforms Polygenic Scores for Classification of Type 2 Diabetes in a Multiancestry Cohort.

Published in:

Diabetes Care, 2023, v. 46, n. 5, p. 929, doi. 10.2337/dc22-0295

By:

Akhtari, Farida S.;
Lloyd, Dillon;
Burkholder, Adam;
Tong, Xiaoran;
House, John S.;
Lee, Eunice Y.;
Buse, John;
Schurman, Shepherd H.;
Fargo, David C.;
Schmitt, Charles P.;
Hall, Janet;
Motsinger-Reif, Alison A.

Publication type:

Article

ORSO (Online Resource for Social Omics): A data-driven social network connecting scientists to genomics datasets.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 1, p. 1, doi. 10.1371/journal.pcbi.1007571

By:

Lavender, Christopher A.;
Shapiro, Andrew J.;
Day, Frank S.;
Fargo, David C.

Publication type:

Article

Muver, a computational framework for accurately calling accumulated mutations.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-4753-3

By:

Burkholder, Adam B.;
Lujan, Scott A.;
Lavender, Christopher A.;
Grimm, Sara A.;
Kunkel, Thomas A.;
Fargo, David C.

Publication type:

Article

ORIO (Online Resource for Integrative Omics): a web-based platform for rapid integration of next generation sequencing data.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 10, p. 5678, doi. 10.1093/nar/gkx270

By:

Lavender, Christopher A.;
Shapiro, Andrew J.;
Burkholder, Adam B.;
Bennett, Brian D.;
Adelman, Karen;
Fargo, David C.

Publication type:

Article