Works by Fagerberg, Linn

Results: 32

Systematic transcriptional analysis of human cell lines for gene expression landscape and tumor representation.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-41132-w

By:

Jin, Han;
Zhang, Cheng;
Zwahlen, Martin;
von Feilitzen, Kalle;
Karlsson, Max;
Shi, Mengnan;
Yuan, Meng;
Song, Xiya;
Li, Xiangyu;
Yang, Hong;
Turkez, Hasan;
Fagerberg, Linn;
Uhlén, Mathias;
Mardinoglu, Adil

Publication type:

Article

Absolute Quantification of Pan-Cancer Plasma Proteomes Reveals Unique Signature in Multiple Myeloma.

Published in:

Cancers, 2023, v. 15, n. 19, p. 4764, doi. 10.3390/cancers15194764

By:

Kotol, David;
Woessmann, Jakob;
Hober, Andreas;
Álvez, María Bueno;
Tran Minh, Khue Hua;
Pontén, Fredrik;
Fagerberg, Linn;
Uhlén, Mathias;
Edfors, Fredrik

Publication type:

Article

Defining the transcriptome and proteome in three functionally different human cell lines.

Published in:

Molecular Systems Biology, 2010, v. 6, n. 1, p. 450, doi. 10.1038/msb.2010.106

By:

Lundberg, Emma;
Fagerberg, Linn;
Klevebring, Daniel;
Matic, Ivan;
Geiger, Tamar;
Cox, Juergen;
Älgenäs, Cajsa;
Lundeberg, Joakim;
Mann, Matthias;
Uhlen, Mathias

Publication type:

Article

A global view of protein expression in human cells, tissues, and organs.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 337, doi. 10.1038/msb.2009.93

By:

Pontén, Fredrik;
Gry, Marcus;
Fagerberg, Linn;
Lundberg, Emma;
Asplund, Anna;
Berglund, Lisa;
Oksvold, Per;
Björling, Erik;
Hober, Sophia;
Kampf, Caroline;
Navani, Sanjay;
Nilsson, Peter;
Ottosson, Jenny;
Persson, Anja;
Wernérus, Henrik;
Wester, Kenneth;
Uhlén, Mathias

Publication type:

Article

Whole-genome sequence association analysis of blood proteins in a longitudinal wellness cohort.

Published in:

Genome Medicine, 2020, v. 12, n. 1, p. 1, doi. 10.1186/s13073-020-00755-0

By:

Zhong, Wen;
Gummesson, Anders;
Tebani, Abdellah;
Karlsson, Max J.;
Hong, Mun-Gwan;
Schwenk, Jochen M.;
Edfors, Fredrik;
Bergström, Göran;
Fagerberg, Linn;
Uhlén, Mathias

Publication type:

Article

The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling.

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1686-y

By:

Lindskog, Cecilia;
Linné, Jerker;
Fagerberg, Linn;
Hallström, Björn M.;
Sundberg, Carl Johan;
Lindholm, Malene;
Huss, Mikael;
Kampf, Caroline;
Choi, Howard;
Liem, David A.;
Peipei Ping;
Väremo, Leif;
Mardinoglu, Adil;
Nielsen, Jens;
Larsson, Erik;
Pontén, Fredrik;
Uhlén, Mathias

Publication type:

Article

The human cardiac and skeletal muscle proteomes defined by transcriptomics and antibody-based profiling

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 475, doi. 10.1186/s12864-015-1686-y

By:

Lindskog, Cecilia;
Linné, Jerker;
Fagerberg, Linn;
Hallström, Björn M;
Sundberg, Carl Johan;
Lindholm, Malene;
Huss, Mikael;
Kampf, Caroline;
Howard Choi;
Liem, David A;
Peipei Ping;
Väremo, Leif;
Mardinoglu, Adil;
Nielsen, Jens;
Larsson, Erik;
Pontén, Fredrik;
Uhlén, Mathias

Publication type:

Article

Systematic Development of Sandwich Immunoassays for the Plasma Secretome.

Published in:

Proteomics, 2019, v. 19, n. 15, p. N.PAG, doi. 10.1002/pmic.201900008

By:

Häussler, Ragna S.;
Bendes, Annika;
Iglesias, MariaJesus;
Sanchez‐Rivera, Laura;
Dodig‐Crnković, Tea;
Byström, Sanna;
Fredolini, Claudia;
Birgersson, Elin;
Dale, Matilda;
Edfors, Fredrik;
Fagerberg, Linn;
Rockberg, Johan;
Tegel, Hanna;
Uhlén, Mathias;
Qundos, Ulrika;
Schwenk, Jochen M.

Publication type:

Article

Individual and stable autoantibody repertoires in healthy individuals.

Published in:

Autoimmunity, 2019, v. 52, n. 1, p. 1, doi. 10.1080/08916934.2019.1581774

By:

Neiman, Maja;
Hellström, Cecilia;
Just, David;
Mattsson, Cecilia;
Fagerberg, Linn;
Schuppe-Koistinen, Ina;
Gummesson, Anders;
Bergström, Göran;
Kallioniemi, Olli;
Achour, Adnane;
Sallinen, Riitta;
Uhlén, Mathias;
Nilsson, Peter

Publication type:

Article

Expression of Human Skin-Specific Genes Defined by Transcriptomics and Antibody-Based Profiling.

Published in:

Journal of Histochemistry & Cytochemistry, 2015, v. 63, n. 2, p. 129, doi. 10.1369/0022155414562646

By:

Edqvist, Per-Henrik D.;
Fagerberg, Linn;
Hallström, Björn M.;
Danielsson, Angelika;
Edlund, Karolina;
Uhlén, Mathias;
Pontén, Fredrik

Publication type:

Article

Enhanced validation of antibodies for research applications.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-06642-y

By:

Edfors, Fredrik;
Hober, Andreas;
Linderbäck, Klas;
Maddalo, Gianluca;
Azimi, Alireza;
Sivertsson, Åsa;
Tegel, Hanna;
Hober, Sophia;
Szigyarto, Cristina Al-Khalili;
Fagerberg, Linn;
von Feilitzen, Kalle;
Oksvold, Per;
Lindskog, Cecilia;
Forsström, Björn;
Uhlen, Mathias

Publication type:

Article

Antibody performance in western blot applications is context-dependent.

Published in:

Biotechnology Journal, 2014, v. 9, n. 3, p. 435, doi. 10.1002/biot.201300341

By:

Älgenäs, Cajsa;
Agaton, Charlotta;
Fagerberg, Linn;
Asplund, Anna;
Björling, Lisa;
Björling, Erik;
Kampf, Caroline;
Lundberg, Emma;
Nilsson, Peter;
Persson, Anja;
Wester, Kenneth;
Pontén, Fredrik;
Wernérus, Henrik;
Uhlén, Mathias;
Ottosson Takanen, Jenny;
Hober, Sophia

Publication type:

Article

Defining the human gallbladder proteome by transcriptomics and affinity proteomics.

Published in:

Proteomics, 2014, v. 14, n. 21/22, p. 2498, doi. 10.1002/pmic.201400201

By:

Kampf, Caroline;
Mardinoglu, Adil;
Fagerberg, Linn;
Hallström, Björn M;
Danielsson, Angelika;
Nielsen, Jens;
Pontén, Fredrik;
Uhlen, Mathias

Publication type:

Article

Prediction of the human membrane proteome.

Published in:

Proteomics, 2010, v. 10, n. 6, p. 1141, doi. 10.1002/pmic.200900258

By:

Fagerberg, Linn;
Jonasson, Kalle;
von Heijne, Gunnar;
Uhlén, Mathias;
Berglund, Lisa

Publication type:

Article

A whole-genome bioinformatics approach to selection of antigens for systematic antibody generation.

Published in:

Proteomics, 2008, v. 8, n. 14, p. 2832, doi. 10.1002/pmic.200800203

By:

Berglund, Lisa;
Björling, Erik;
Jonasson, Kalle;
Rockberg, Johan;
Fagerberg, Linn;
Al-Khalili Szigyarto, Cristina;
Sivertsson, Åsa;
Uhlén, Mathias

Publication type:

Article

A systems-approach reveals human nestin is an endothelial-enriched, angiogenesis-independent intermediate filament protein.

Published in:

Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-32859-4

By:

Dusart, Philip;
Fagerberg, Linn;
Perisic, Ljubica;
Civelek, Mete;
Struck, Eike;
Hedin, Ulf;
Uhlén, Mathias;
Trégouët, David-Alexandre;
Renné, Thomas;
Odeberg, Jacob;
Butler, Lynn M.

Publication type:

Article

iNetModels 2.0: an interactive visualization and database of multi-omics data.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W271, doi. 10.1093/nar/gkab254

By:

Arif, Muhammad;
Zhang, Cheng;
Li, Xiangyu;
Güngör, Cem;
Çakmak, Buğra;
Arslantürk, Metin;
Tebani, Abdellah;
Özcan, Berkay;
Subaş, Oğuzhan;
Zhou, Wenyu;
Piening, Brian;
Turkez, Hasan;
Fagerberg, Linn;
Price, Nathan;
Hood, Leroy;
Snyder, Michael;
Nielsen, Jens;
Uhlen, Mathias;
Mardinoglu, Adil

Publication type:

Article

Complementing tissue characterization by integrating transcriptome profiling from the Human Protein Atlas and from the FANTOM5 consortium.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 14, p. 6787, doi. 10.1093/nar/gkv608

By:

Nancy Yiu-Lin Yu;
Hallström, Björn M.;
Fagerberg, Linn;
Ponten, Fredrik;
Kawaji, Hideya;
Carninci, Piero;
Forrest, Alistair R. R.;
Yoshihide Hayashizaki;
Uhlén, Mathias;
Daub, Carsten O.

Publication type:

Article

A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 20, p. 10084, doi. 10.1093/nar/gks804

By:

Nookaew, Intawat;
Papini, Marta;
Pornputtapong, Natapol;
Scalcinati, Gionata;
Fagerberg, Linn;
Uhlén, Matthias;
Nielsen, Jens

Publication type:

Article

The Urinary Bladder Transcriptome and Proteome Defined by Transcriptomics and Antibody-Based Profiling.

Published in:

PLoS ONE, 2015, v. 10, n. 12, p. 1, doi. 10.1371/journal.pone.0145301

By:

Habuka, Masato;
Fagerberg, Linn;
Hallström, Björn M.;
Pontén, Fredrik;
Yamamoto, Tadashi;
Uhlen, Mathias

Publication type:

Article

Analysis of the Human Prostate-Specific Proteome Defined by Transcriptomics and Antibody-Based Profiling Identifies TMEM79 and ACOXL as Two Putative, Diagnostic Markers in Prostate Cancer.

Published in:

PLoS ONE, 2015, v. 10, n. 8, p. 1, doi. 10.1371/journal.pone.0133449

By:

O'Hurley, Gillian;
Busch, Christer;
Fagerberg, Linn;
Hallström, Björn M.;
Stadler, Charlotte;
Tolf, Anna;
Lundberg, Emma;
Schwenk, Jochen M.;
Jirström, Karin;
Bjartell, Anders;
Gallagher, William M.;
Uhlén, Mathias;
Pontén, Fredrik

Publication type:

Article

Defining the Human Brain Proteome Using Transcriptomics and Antibody-Based Profiling with a Focus on the Cerebral Cortex.

Published in:

PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0130028

By:

Sjöstedt, Evelina;
Fagerberg, Linn;
Hallström, Björn M.;
Häggmark, Anna;
Mitsios, Nicholas;
Nilsson, Peter;
Pontén, Fredrik;
Hökfelt, Tomas;
Uhlén, Mathias;
Mulder, Jan

Publication type:

Article

The Kidney Transcriptome and Proteome Defined by Transcriptomics and Antibody-Based Profiling.

Published in:

PLoS ONE, 2014, v. 9, n. 12, p. 1, doi. 10.1371/journal.pone.0116125

By:

Habuka, Masato;
Fagerberg, Linn;
Hallström, Björn M.;
Kampf, Caroline;
Edlund, Karolina;
Sivertsson, Åsa;
Yamamoto, Tadashi;
Pontén, Fredrik;
Uhlén, Mathias;
Odeberg, Jacob

Publication type:

Article

The Transcriptomic and Proteomic Landscapes of Bone Marrow and Secondary Lymphoid Tissues.

Published in:

PLoS ONE, 2014, v. 9, n. 12, p. 1, doi. 10.1371/journal.pone.0115911

By:

Andersson, Sandra;
Nilsson, Kenneth;
Fagerberg, Linn;
Hallström, Björn M.;
Sundström, Christer;
Danielsson, Angelika;
Edlund, Karolina;
Uhlen, Mathias;
Asplund, Anna

Publication type:

Article

The Human Pancreas Proteome Defined by Transcriptomics and Antibody-Based Profiling.

Published in:

PLoS ONE, 2014, v. 9, n. 12, p. 1, doi. 10.1371/journal.pone.0115421

By:

Danielsson, Angelika;
Pontén, Fredrik;
Fagerberg, Linn;
Hallström, Björn M.;
Schwenk, Jochen M.;
Uhlén, Mathias;
Korsgren, Olle;
Lindskog, Cecilia

Publication type:

Article

Towards a knowledge-based Human Protein Atlas.

Published in:

2010

By:

Uhlen, Mathias;
Oksvold, Per;
Fagerberg, Linn;
Lundberg, Emma;
Jonasson, Kalle;
Forsberg, Mattias;
Zwahlen, Martin;
Kampf, Caroline;
Wester, Kenneth;
Hober, Sophia;
Wernerus, Henrik;
Björling, Lisa;
Ponten, Fredrik

Publication type:

Letter

Analysis of transcript and protein overlap in a human osteosarcoma cell line.

Published in:

BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-684

By:

Klevebring, Daniel;
Fagerberg, Linn;
Lundberg, Emma;
Emanuelsson, Olof;
Uhlén, Mathias;
Lundeberg, Joakim

Publication type:

Article

Analysis of transcript and protein overlap in a human osteosarcoma cell line.

Published in:

BMC Genomics, 2010, v. 11, p. 684, doi. 10.1186/1471-2164-11-684

By:

Klevebring, Daniel;
Linn Fagerberg;
Lundberg, Emma;
Emanuelsson, Olof;
Uhlén, Mathias;
Lundeberg, Joakim

Publication type:

Article

The human gastrointestinal tract-specific transcriptome and proteome as defined by RNA sequencing and antibody-based profiling.

Published in:

Journal of Gastroenterology, 2015, v. 50, n. 1, p. 46, doi. 10.1007/s00535-014-0958-7

By:

Gremel, Gabriela;
Wanders, Alkwin;
Cedernaes, Jonathan;
Fagerberg, Linn;
Hallström, Björn;
Edlund, Karolina;
Sjöstedt, Evelina;
Uhlén, Mathias;
Pontén, Fredrik

Publication type:

Article

Next generation plasma proteome profiling to monitor health and disease.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22767-z

By:

Zhong, Wen;
Edfors, Fredrik;
Gummesson, Anders;
Bergström, Göran;
Fagerberg, Linn;
Uhlén, Mathias

Publication type:

Article

The lung-specific proteome defined by integration of transcriptomics and antibody-based profiling.

Published in:

FASEB Journal, 2014, v. 28, n. 12, p. 5184, doi. 10.1096/fj.14-254862

By:

Lindskog, Cecilia;
Fagerberg, Linn;
Haliström, Björn;
Edlund, Karolina;
Hellwig, Birte;
Rahnenführer, Jörg;
Kampf, Caroline;
Uhlén, Mathias;
Pontén, Fredrik;
Micke, Patrick

Publication type:

Article

The human liver-specific proteome defined by transcriptomics and antibody-based profiling.

Published in:

FASEB Journal, 2014, v. 28, n. 7, p. 2901, doi. 10.1096/fj.14-250555

By:

Kampf, Caroline;
Mardinoglu, Adil;
Fagerberg, Linn;
Hallstrom, Björn M.;
Edlund, Karolina;
Lundberg, Emma;
Pontén, Fredrik;
Nielsen, Jens;
Uhlen, Mathias

Publication type:

Article