Works by FIELD, DAWN

Results: 46

The Genomic Standards Consortium.

Published in:

PLoS Biology, 2011, v. 9, n. 6, p. 1, doi. 10.1371/journal.pbio.1001088

By:

Field, Dawn;
Amaral-Zettler, Linda;
Cochrane, Guy;
Cole, James R.;
Dawyndt, Peter;
Garrity, George M.;
Gilbert, Jack;
Glöckner, Frank Oliver;
Hirschman, Lynette;
Karsch-Mizrachi, Ilene;
Klenk, Hans-Peter;
Knight, Rob;
Kottmann, Renzo;
Kyrpides, Nikos;
Meyer, Folker;
Gil, Inigo San;
Sansone, Susanna-Assunta;
Schriml, Lynn M.;
Sterk, Peter;
Tatusova, Tatiana

Publication type:

Article

Bioinformatics and Data Management Support for Environmental Genomics.

Published in:

PLoS Biology, 2005, v. 3, n. 8, p. 1, doi. 10.1371/journal.pbio.0030297

By:

Field, Dawn;
Tiwari, Bela;
Snape, Jason

Publication type:

Article

Bioinformatics and Data Management Support for Environmental Genomics.

Published in:

PLoS Biology, 2005, v. 3, n. 8, p. 1352, doi. 10.1371/journal.pbio.0030297

By:

Field, Dawn;
Tiwari, Bela;
Snape, Jason

Publication type:

Article

The Positive Role of the Ecological Community in the Genomic Revolution.

Published in:

Microbial Ecology, 2007, v. 53, n. 3, p. 507, doi. 10.1007/s00248-007-9206-5

By:

Field, Dawn;
Kyrpides, Nikos

Publication type:

Article

Genomic Standards Consortium Projects.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 599, doi. 10.4056/sigs.5559680

By:

Field, Dawn;
Sterk, Peter;
Kottmann, Renzo;
Smet, J.;
Amaral-Zettler, Linda;
Cochrane, Guy;
Cole, James;
Davies, Neil;
Dawyndt, Peter;
Garrity, George;
Gilbert, Jack;
Glöckner, Frank;
Hirschman, Lynette;
Klenk, Hans-Peter;
Knight, Rob;
Kyrpides, Nikos;
Meyer, Folker;
Karsch-Mizrachi, Ilene;
Morrison, Norman;
Robbins, Robert

Publication type:

Article

Report of the 14 Genomic Standards Consortium Meeting, Oxford, UK, September 17-21, 2012.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1236, doi. 10.4056/sigs.4319681

By:

Davies, Neil;
Field, Dawn;
Amaral-Zettler, Linda;
Barker, Katharine;
Bicak, Mesude;
Bourlat, Sarah;
Coddington, Jonathan;
Deck, John;
Drummond, Alexei;
Gilbert, Jack;
Glöckner, Frank;
Kottmann, Renzo;
Meyer, Chris;
Morrison, Norman;
Obst, Matthias;
Robbins, Robert;
Schriml, Lynn;
Sterk, Peter;
Stones-Havas, Steven

Publication type:

Article

The 15th Genomic Standards Consortium meeting.

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 1, p. 124, doi. 10.4056/sigs.3457

By:

Schriml, Lynn;
Mizrachi, Ilene;
Sterk, Peter;
Field, Dawn;
Hirschman, Lynette;
Tatusova, Tatiana;
Sansone, Susanna;
Gilbert, Jack;
Schindel, David;
Davies, Neil;
Meyer, Chris;
Meyer, Folker;
Garrity, George;
Proctor, Lita;
Medema, M.;
Lan, Yemin;
Klindworth, Anna;
Glöckner, Frank;
Korves, Tonia;
Gonzalez, Antonia

Publication type:

Article

RCN4GSC Workshop Report: Managing Data at the Interface of Biodiversity and (Meta)Genomics, March 2011.

Published in:

2012

By:

Robbins, Robert J.;
Amaral-Zettler, Linda;
Bik, Holly;
Blum, Stan;
Edwards, James;
Field, Dawn;
Garrity, George;
Gilbert, Jack A.;
Kottmann, Renzo;
Krishtalka, Leonard;
Lapp, Hilmar;
Lawrence, Carolyn;
Morrison, Norman;
Tuama, Éamonn Ó.;
Parr, Cynthia;
Gil, Inigo San;
Schindel, David;
Schriml, Lynn;
Vieglas, David;
Wooley, John

Publication type:

Proceeding

Meeting Report: Hackathon-Workshop on Darwin Core and MIxS Standards Alignment (February 2012).

Published in:

2012

By:

Tuama, Éamonn Ó.;
Deck, John;
Dröge, Gabriel;
Döring, Markus;
Field, Dawn;
Kottmann, Renzo;
Juncai Ma;
Hiroshi Mori;
Morrison, Norman;
Sterk, Peter;
Hideaki Sugawara;
Wieczorek, John;
Linhuan Wu;
Pelin Yilmaz

Publication type:

Proceeding

Ecological perspectives on the sequenced genome collection.

Published in:

Ecology Letters, 2005, v. 8, n. 12, p. 1334, doi. 10.1111/j.1461-0248.2005.00837.x

By:

Hughes Martiny, Jennifer B.;
Field, Dawn;
Rainey, Paul

Publication type:

Article

PlantTribes: a gene and gene family resource for comparative genomics in plants.

Published in:

Nucleic Acids Research, 2008, v. 36, p. D970

By:

Wall, P. Kerr;
Leebens-Mack, Jim;
Müller, Kai F.;
Field, Dawn;
Altman, Naomi S.;
dePamphilis, Claude W.

Publication type:

Article

eGenomics: Cataloguing Our Complete Genome Collection III.

Published in:

2007

By:

Field, Dawn;
Garrity, George;
Gray, Tanya;
Selengut, Jeremy;
Sterk, Peter;
Thomson, Nick;
Tatusova, Tatiana;
Cochrane, Guy;
Glöckner, Frank Oliver;
Kottmann, Renzo;
Lister, Allyson L.;
Tateno, Yoshio;
Vaughan, Robert

Publication type:

Proceeding

USE OF MICROARRAYS TO STUDY ENVIRONMENTALLY RELEVANT ORGANISMS: A UK PERSPECTIVE.

Published in:

Environmental Research Journal, 2010, v. 4, n. 1/2, p. 43

By:

Allen, Michael J.;
Cossins, Andrew R.;
Hall, Neil;
Blaxter, Mark;
Burke, Terry;
Field, Dawn

Publication type:

Article

Sequencing data: A genomic network to monitor Earth.

Published in:

2012

By:

Davies, Neil;
Field, Dawn;
The Genomic Observatories Network

Publication type:

Letter

The microsatellites of Escherichia coli: rapidly evolving repetitive DNAs in a non-pathogenic prokaryote.

Published in:

Molecular Microbiology, 2001, v. 39, n. 1, p. 183, doi. 10.1046/j.1365-2958.2001.02245.x

By:

Metzgar, David;
Thomas, Elizabeth;
Davis, Clara;
Field, Dawn;
Wills, Christopher

Publication type:

Article

The length of a tetranucleotide repeat tract in Haemophilus influenzae determines the phase variation rate of a gene with homology to type III DNA methyltransferases.

Published in:

Molecular Microbiology, 2000, v. 35, n. 1, p. 211, doi. 10.1046/j.1365-2958.2000.01701.x

By:

De Bolle, Xavier;
Bayliss, Christopher D;
Field, Dawn;
van de Ven, Tamsin;
Saunders, Nigel J;
Hood, Derek W;
Moxon, E. Richard

Publication type:

Article

The Western English Channel contains a persistent microbial seed bank.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 6, p. 1089, doi. 10.1038/ismej.2011.162

By:

Caporaso, J Gregory;
Paszkiewicz, Konrad;
Field, Dawn;
Knight, Rob;
Gilbert, Jack A

Publication type:

Article

Defining seasonal marine microbial community dynamics.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 2, p. 298, doi. 10.1038/ismej.2011.107

By:

Gilbert, Jack A;
Steele, Joshua A;
Caporaso, J Gregory;
Steinbrück, Lars;
Reeder, Jens;
Temperton, Ben;
Huse, Susan;
McHardy, Alice C;
Knight, Rob;
Joint, Ian;
Somerfield, Paul;
Fuhrman, Jed A;
Field, Dawn

Publication type:

Article

The genomic standards consortium: bringing standards to life for microbial ecology.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2011, v. 5, n. 10, p. 1565, doi. 10.1038/ismej.2011.39

By:

Yilmaz, Pelin;
Gilbert, Jack A;
Knight, Rob;
Amaral-Zettler, Linda;
Karsch-Mizrachi, Ilene;
Cochrane, Guy;
Nakamura, Yasukazu;
Sansone, Susanna-Assunta;
Glöckner, Frank Oliver;
Field, Dawn

Publication type:

Article

Supervised classification of microbiota mitigates mislabeling errors.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2011, v. 5, n. 4, p. 570, doi. 10.1038/ismej.2010.148

By:

Knights, Dan;
Kuczynski, Justin;
Koren, Omry;
Ley, Ruth E;
Field, Dawn;
Knight, Rob;
DeSantis, Todd Z;
Kelley, Scott T

Publication type:

Article

Comparison of multiple metagenomes using phylogenetic networks based on ecological indices.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2010, v. 4, n. 10, p. 1236, doi. 10.1038/ismej.2010.51

By:

Mitra, Suparna;
Gilbert, Jack A;
Field, Dawn;
Huson, Daniel H

Publication type:

Article

Bias in assessments of marine microbial biodiversity in fosmid libraries as evaluated by pyrosequencing.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2009, v. 3, n. 7, p. 792, doi. 10.1038/ismej.2009.32

By:

Temperton, Ben;
Field, Dawn;
Oliver, Anna;
Tiwari, Bela;
Mühling, Martin;
Joint, Ian;
Gilbert, Jack A.

Publication type:

Article

Synthesis Centers as Critical Research Infrastructure.

Published in:

BioScience, 2017, v. 67, n. 8, p. 750, doi. 10.1093/biosci/bix053

By:

BARON, JILL S.;
SPECHT, ALISON;
GARNIER, ERIC;
BISHOP, PAMELA;
CAMPBELL, C. ANDREW;
DAVIS, FRANK W.;
FADY, BRUNO;
FIELD, DAWN;
GROSS, LOUIS J.;
GURU, SIDDESWARA M.;
HALPERN, BENJAMIN S.;
HAMPTON, STEPHANIE E.;
LEAVITT, PETER R.;
MEAGHER, THOMAS R.;
OMETTO, JEAN;
PARKER, JOHN N.;
PRICE, RICHARD;
RAWSON, CASEY H.;
RODRIGO, ALLEN;
SHEBLE, LAURA A.

Publication type:

Article

Predicting bacterial community assemblages using an artificial neural network approach.

Published in:

Nature Methods, 2012, v. 9, n. 6, p. 621, doi. 10.1038/nmeth.1975

By:

Larsen, Peter E;
Field, Dawn;
Gilbert, Jack A

Publication type:

Article

Contingency Loci, Mutator Alleles, and Their Interactions: Synergistic Strategies for Microbial Evolution and Adaptation in Pathogenesis<sup>a</sup>.

Published in:

Annals of the New York Academy of Sciences, 1999, v. 870, n. 1, p. 378, doi. 10.1111/j.1749-6632.1999.tb08907.x

By:

FIELD, DAWN;
MAGNASCO, MARCELO O.;
MOXON, E. RICHARD;
METZGAR, DAVID;
TANAKA, MARK M.;
WILLS, CHRISTOPHER;
THALER, DAVID S.

Publication type:

Article

ISA software suite: supporting standards-compliant experimental annotation and enabling curation at the community level.

Published in:

Bioinformatics, 2010, v. 26, n. 18, p. 2354, doi. 10.1093/bioinformatics/btq415

By:

Rocca-Serra, Philippe;
Brandizi, Marco;
Maguire, Eamonn;
Sklyar, Nataliya;
Taylor, Chris;
Begley, Kimberly;
Field, Dawn;
Harris, Stephen;
Hide, Winston;
Hofmann, Oliver;
Neumann, Steffen;
Sterk, Peter;
Tong, Weida;
Sansone, Susanna-Assunta

Publication type:

Article

The effect of anthropogenic arsenic contamination on the earthworm microbiome.

Published in:

Environmental Microbiology, 2015, v. 17, n. 6, p. 1884, doi. 10.1111/1462-2920.12712

By:

Pass, Daniel Antony;
Morgan, Andrew John;
Read, Daniel S.;
Field, Dawn;
Weightman, Andrew J.;
Kille, Peter

Publication type:

Article

The seasonal structure of microbial communities in the Western English Channel.

Published in:

Environmental Microbiology, 2009, v. 11, n. 12, p. 3132, doi. 10.1111/j.1462-2920.2009.02017.x

By:

Gilbert, Jack A.;
Field, Dawn;
Swift, Paul;
Newbold, Lindsay;
Oliver, Anna;
Smyth, Tim;
Somerfield, Paul J.;
Huse, Sue;
Joint, Ian

Publication type:

Article

Potential for phosphonoacetate utilization by marine bacteria in temperate coastal waters.

Published in:

Environmental Microbiology, 2009, v. 11, n. 1, p. 111, doi. 10.1111/j.1462-2920.2008.01745.x

By:

Gilbert, Jack A.;
Thomas, Simon;
Cooley, Natalie A.;
Kulakova, Anna;
Field, Dawn;
Booth, Tim;
McGrath, John W.;
Quinn, John P.;
Joint, Ian

Publication type:

Article

Unlocking the potential of metagenomics through replicated experimental design.

Published in:

Nature Biotechnology, 2012, v. 30, n. 6, p. 513, doi. 10.1038/nbt.2235

By:

Knight, Rob;
Jansson, Janet;
Field, Dawn;
Fierer, Noah;
Desai, Narayan;
Fuhrman, Jed A;
Hugenholtz, Phil;
van der Lelie, Daniel;
Meyer, Folker;
Stevens, Rick;
Bailey, Mark J;
Gordon, Jeffrey I;
Kowalchuk, George A;
Gilbert, Jack A

Publication type:

Article

The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools.

Published in:

BMC Bioinformatics, 2012, v. 13, n. 1, p. 141, doi. 10.1186/1471-2105-13-141

By:

Wilke, Andreas;
Harrison, Travis;
Wilkening, Jared;
Field, Dawn;
Glass, Elizabeth M.;
Kyrpides, Nikos;
Mavrommatis, Konstantinos;
Meyer, Folker

Publication type:

Article

Towards BioDBcore: a community-defined information specification for biological databases.

Published in:

Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D7, doi. 10.1093/nar/gkq1173

By:

Gaudet, Pascale;
Bairoch, Amos;
Field, Dawn;
Sansone, Susanna-Assunta;
Taylor, Chris;
Attwood, Teresa K.;
Bateman, Alex;
Blake, Judith A.;
Bult, Carol J.;
Cherry, J. Michael;
Chisholm, Rex L.;
Cochrane, Guy;
Cook, Charles E.;
Eppig, Janan T.;
Galperin, Michael Y.;
Gentleman, Robert;
Goble, Carole A.;
Gojobori, Takashi;
Hancock, John M.;
Howe, Douglas G.

Publication type:

Article

Towards BioDBcore: a community-defined information specification for biological databases.

Published in:

Database: The Journal of Biological Databases & Curation, 2011, v. 2011, n. 0, p. 1

By:

Gaudet, Pascale;
Bairoch, Amos;
Field, Dawn;
Sansone, Susanna-Assunta;
Taylor, Chris;
Attwood, Teresa K.;
Bateman, Alex;
Blake, Judith A.;
Bult, Carol J.;
Cherry, J. Michael;
Chisholm, Rex L.;
Cochrane, Guy;
Cook, Charles E.;
Eppig, Janan T.;
Galperin, Michael Y.;
Gentleman, Robert;
Goble, Carole A.;
Gojobori, Takashi;
Hancock, John M.;
Howe, Douglas G.

Publication type:

Article

Working together to put molecules on the map.

Published in:

2008

By:

Field, Dawn

Publication type:

Letter

Public repositories need serious funding.

Published in:

2006

By:

Tiwari, Bela;
Field, Dawn;
Snape, Jason

Publication type:

Letter

Simulating social-ecological systems: the Island Digital Ecosystem Avatars (IDEA) consortium.

Published in:

GigaScience, 2016, v. 5, p. 1, doi. 10.1186/s13742-016-0118-5

By:

Davies, Neil;
Field, Dawn;
Gavaghan, David;
Holbrook, Sally J.;
Planes, Serge;
Troyer, Matthias;
Bonsall, Michael;
Claudet, Joachim;
Roderick, George;
Schmitt, Russell J.;
Amaral Zettler, Linda;
Berteaux, Véronique;
Bossin, Hervé C.;
Cabasse, Charlotte;
Collin, Antoine;
Deck, John;
Dell, Tony;
Dunne, Jennifer;
Gates, Ruth;
Harfoot, Mike

Publication type:

Article

The Taxonomic and Functional Diversity of Microbes at a Temperate Coastal Site: A 'Multi-Omic' Study of Seasonal and Diel Temporal Variation.

Published in:

PLoS ONE, 2010, v. 5, n. 11, p. 1, doi. 10.1371/journal.pone.0015545

By:

Gilbert, Jack A.;
Field, Dawn;
Swift, Paul;
Thomas, Simon;
Cummings, Denise;
Temperton, Ben;
Weynberg, Karen;
Huse, Susan;
Hughes, Margaret;
Joint, Ian;
Somerfield, Paul J.;
Mühling, Martin

Publication type:

Article

The United States of America and Scientific Research.

Published in:

PLoS ONE, 2010, v. 5, n. 8, p. 1, doi. 10.1371/journal.pone.0012203

By:

Hather, Gregory J.;
Haynes, Winston;
Higdon, Roger;
Kolker, Natali;
Stewart, Elizabeth A.;
Arzberger, Peter;
Chain, Patrick;
Field, Dawn;
Franza, B. Robert;
Lin, Biaoyang;
Meyer, Folker;
Ozdemir, Vural;
Smith, Charles V.;
van Belle, Gerald;
Wooley, John;
Kolker, Eugene

Publication type:

Article

Detection of Large Numbers of Novel Sequences in the Metatranscriptomes of Complex Marine Microbial Communities.

Published in:

PLoS ONE, 2008, v. 3, n. 8, p. 1, doi. 10.1371/journal.pone.0003042

By:

Gilbert, Jack A.;
Field, Dawn;
Ying Huang;
Edwards, Rob;
Weizhong Li;
Gilna, Paul;
Joint, Ian

Publication type:

Article

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.

Published in:

2011

By:

Yilmaz, Pelin;
Kottmann, Renzo;
Field, Dawn;
Knight, Rob;
Cole, James R.;
Amaral-Zettler, Linda;
Gilbert, Jack A.;
Karsch-Mizrachi, Ilene;
Johnston, Anjanette;
Cochrane, Guy;
Vaughan, Robert;
Hunter, Christopher;
Park, Joonhong;
Morrison, Norman;
Rocca-Serra, Philippe;
Sterk, Peter;
Arumugam, Manimozhiyan;
Bailey, Mark;
Baumgartner, Laura;
Birren, Bruce W.

Publication type:

Opinion

Promoting coherent minimum reporting guidelines for biological and biomedical investigations: the MIBBI project.

Published in:

Nature Biotechnology, 2008, v. 26, n. 8, p. 889, doi. 10.1038/nbt.1411

By:

Taylor, Chris F;
Field, Dawn;
Sansone, Susanna-Assunta;
Aerts, Jan;
Apweiler, Rolf;
Ashburner, Michael;
Ball, Catherine A;
Binz, Pierre-Alain;
Bogue, Molly;
Booth, Tim;
Brazma, Alvis;
Brinkman, Ryan R;
Michael Clark, Adam;
Deutsch, Eric W;
Fiehn, Oliver;
Fostel, Jennifer;
Ghazal, Peter;
Gibson, Frank;
Gray, Tanya;
Grimes, Graeme

Publication type:

Article

The minimum information about a genome sequence (MIGS) specification.

Published in:

Nature Biotechnology, 2008, v. 26, n. 5, p. 541, doi. 10.1038/nbt1360

By:

Field, Dawn;
Garrity, George;
Gray, Tanya;
Morrison, Norman;
Selengut, Jeremy;
Sterk, Peter;
Tatusova, Tatiana;
Thomson, Nicholas;
Allen, Michael J;
Angiuoli, Samuel V;
Ashburner, Michael;
Axelrod, Nelson;
Baldauf, Sandra;
Ballard, Stuart;
Boore, Jeffrey;
Cochrane, Guy;
Cole, James;
Dawyndt, Peter;
De Vos, Paul;
dePamphilis, Claude

Publication type:

Article

Open software for biologists: from famine to feast.

Published in:

Nature Biotechnology, 2006, v. 24, n. 7, p. 801, doi. 10.1038/nbt0706-801

By:

Field, Dawn;
Tiwari, Bela;
Booth, Tim;
Houten, Stewart;
Swan, Dan;
Bertrand, Nicolas;
Thurston, Milo

Publication type:

Article

Toward interoperable bioscience data.

Published in:

Nature Genetics, 2012, v. 44, n. 2, p. 121, doi. 10.1038/ng.1054

By:

Sansone, Susanna-Assunta;
Rocca-Serra, Philippe;
Field, Dawn;
Maguire, Eamonn;
Taylor, Chris;
Hofmann, Oliver;
Fang, Hong;
Neumann, Steffen;
Tong, Weida;
Amaral-Zettler, Linda;
Begley, Kimberly;
Booth, Tim;
Bougueleret, Lydie;
Burns, Gully;
Chapman, Brad;
Clark, Tim;
Coleman, Lee-Ann;
Copeland, Jay;
Das, Sudeshna;
de Daruvar, Antoine

Publication type:

Article

Catchment-scale biogeography of riverine bacterioplankton.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 2, p. 516, doi. 10.1038/ismej.2014.166

By:

Read, Daniel S;
Gweon, Hyun S;
Bowes, Michael J;
Newbold, Lindsay K;
Field, Dawn;
Bailey, Mark J;
Griffiths, Robert I

Publication type:

Article

Satellite remote sensing data can be used to model marine microbial metabolite turnover.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 1, p. 166, doi. 10.1038/ismej.2014.107

By:

Larsen, Peter E;
Scott, Nicole;
Post, Anton F;
Field, Dawn;
Knight, Rob;
Hamada, Yuki;
Gilbert, Jack A

Publication type:

Article