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Multi-species annotation of transcriptome and chromatin structure in domesticated animals.
Published in:
BMC Biology, 2019, v. 17, n. 1, p. 1, doi. 10.1186/s12915-019-0726-5
By:
- Foissac, Sylvain;
- Djebali, Sarah;
- Munyard, Kylie;
- Vialaneix, Nathalie;
- Rau, Andrea;
- Muret, Kevin;
- Esquerré, Diane;
- Zytnicki, Matthias;
- Derrien, Thomas;
- Bardou, Philippe;
- Blanc, Fany;
- Cabau, Cédric;
- Crisci, Elisa;
- Dhorne-Pollet, Sophie;
- Drouet, Françoise;
- Faraut, Thomas;
- Gonzalez, Ignacio;
- Goubil, Adeline;
- Lacroix-Lamandé, Sonia;
- Laurent, Fabrice
Publication type:
Article
Whole-genome sequencing of 234 bulls facilitates mapping of monogenic and complex traits in cattle.
Published in:
Nature Genetics, 2014, v. 46, n. 8, p. 858, doi. 10.1038/ng.3034
By:
- Daetwyler, Hans D;
- Capitan, Aurélien;
- Pausch, Hubert;
- Stothard, Paul;
- van Binsbergen, Rianne;
- Brøndum, Rasmus F;
- Liao, Xiaoping;
- Djari, Anis;
- Rodriguez, Sabrina C;
- Grohs, Cécile;
- Esquerré, Diane;
- Bouchez, Olivier;
- Rossignol, Marie-Noëlle;
- Klopp, Christophe;
- Rocha, Dominique;
- Fritz, Sébastien;
- Eggen, André;
- Bowman, Phil J;
- Coote, David;
- Chamberlain, Amanda J
Publication type:
Article
Progressive ataxia of Charolais cattle highlights a role of KIF1C in sustainable myelination.
Published in:
PLoS Genetics, 2018, v. 14, n. 8, p. 1, doi. 10.1371/journal.pgen.1007550
By:
- Duchesne, Amandine;
- Vaiman, Anne;
- Frah, Magali;
- Floriot, Sandrine;
- Legoueix-Rodriguez, Sabrina;
- Desmazières, Anne;
- Fritz, Sébastien;
- Beauvallet, Christian;
- Albaric, Olivier;
- Venot, Eric;
- Bertaud, Maud;
- Saintilan, Romain;
- Guatteo, Raphaël;
- Esquerré, Diane;
- Branchu, Julien;
- Fleming, Anaïs;
- Brice, Alexis;
- Darios, Frédéric;
- Vilotte, Jean-Luc;
- Stevanin, Giovanni
Publication type:
Article
Genome-Wide Study of Structural Variants in Bovine Holstein, Montbéliarde and Normande Dairy Breeds.
Published in:
PLoS ONE, 2015, v. 10, n. 8, p. 1, doi. 10.1371/journal.pone.0135931
By:
- Boussaha, Mekki;
- Esquerré, Diane;
- Barbieri, Johanna;
- Djari, Anis;
- Pinton, Alain;
- Letaief, Rabia;
- Salin, Gérald;
- Escudié, Frédéric;
- Roulet, Alain;
- Fritz, Sébastien;
- Samson, Franck;
- Grohs, Cécile;
- Bernard, Maria;
- Klopp, Christophe;
- Boichard, Didier;
- Rocha, Dominique
Publication type:
Article
Genome-Wide Characterization of RNA Editing in Chicken Embryos Reveals Common Features among Vertebrates.
Published in:
PLoS ONE, 2015, v. 10, n. 5, p. 1, doi. 10.1371/journal.pone.0126776
By:
- Frésard, Laure;
- Leroux, Sophie;
- Roux, Pierre-François;
- Klopp, Christophe;
- Fabre, Stéphane;
- Esquerré, Diane;
- Dehais, Patrice;
- Djari, Anis;
- Gourichon, David;
- Lagarrigue, Sandrine;
- Pitel, Frédérique
Publication type:
Article
Re-Sequencing Data for Refining Candidate Genes and Polymorphisms in QTL Regions Affecting Adiposity in Chicken.
Published in:
PLoS ONE, 2014, v. 9, n. 10, p. 1, doi. 10.1371/journal.pone.0111299
By:
- Roux, Pierre-François;
- Boutin, Morgane;
- Désert, Colette;
- Djari, Anis;
- Esquerré, Diane;
- Klopp, Christophe;
- Lagarrigue, Sandrine;
- Demeure, Olivier
Publication type:
Article
Extensive Expression Differences along Porcine Small Intestine Evidenced by Transcriptome Sequencing.
Published in:
PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0088515
By:
- Mach, Núria;
- Berri, Mustapha;
- Esquerré, Diane;
- Chevaleyre, Claire;
- Lemonnier, Gaëtan;
- Billon, Yvon;
- Lepage, Patricia;
- Oswald, Isabelle P.;
- Doré, Joël;
- Rogel-Gaillard, Claire;
- Estellé, Jordi
Publication type:
Article
Detection of Haplotypes Associated with Prenatal Death in Dairy Cattle and Identification of Deleterious Mutations in GART, SHBG and SLC37A2.
Published in:
PLoS ONE, 2013, v. 8, n. 6, p. 1, doi. 10.1371/journal.pone.0065550
By:
- Fritz, Sébastien;
- Capitan, Aurelien;
- Djari, Anis;
- Rodriguez, Sabrina C.;
- Barbat, Anne;
- Baur, Aurélia;
- Grohs, Cécile;
- Weiss, Bernard;
- Boussaha, Mekki;
- Esquerré, Diane;
- Klopp, Christophe;
- Rocha, Dominique;
- Boichard, Didier
Publication type:
Article
Novel Insights into the Bovine Polled Phenotype and Horn Ontogenesis in <i>Bovidae</i>
Published in:
PLoS ONE, 2013, v. 8, n. 5, p. 1, doi. 10.1371/journal.pone.0063512
By:
- Allais-Bonnet, Aurélie;
- Grohs, Cécile;
- Medugorac, Ivica;
- Krebs, Stefan;
- Djari, Anis;
- Graf, Alexander;
- Fritz, Sébastien;
- Seichter, Doris;
- Baur, Aurélia;
- Russ, Ingolf;
- Bouet, Stéphan;
- Rothammer, Sophie;
- Wahlberg, Per;
- Esquerré, Diane;
- Hoze, Chris;
- Boussaha, Mekki;
- Weiss, Bernard;
- Thépot, Dominique;
- Fouilloux, Marie-Noëlle;
- Rossignol, Marie-Noëlle
Publication type:
Article
Expression profiling of rainbow trout testis development identifies evolutionary conserved genes involved in spermatogenesis.
Published in:
BMC Genomics, 2009, v. 10, p. 546, doi. 10.1186/1471-2164-10-546
By:
- Rolland, Antoine D.;
- Lareyre, Jean-Jacques;
- Goupil, Anne-Sophie;
- Montfort, Jérôme;
- Ricordel, Marie-Jo;
- Esquerré, Diane;
- Hugot, Karine;
- Houlgatte, Rémi;
- Chalmel, Fréderic;
- Le Gac, Florence
Publication type:
Article
Unraveling the effects of the gut microbiota composition and function on horse endurance physiology.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-46118-7
By:
- Plancade, Sandra;
- Clark, Allison;
- Philippe, Catherine;
- Helbling, Jean-Christophe;
- Moisan, Marie-Pierre;
- Esquerré, Diane;
- Moyec, Laurence le;
- Robert, Céline;
- Barrey, Eric;
- Mach, Núria
Publication type:
Article
The Extent of mRNA Editing Is Limited in Chicken Liver and Adipose, but Impacted by Tissular Context, Genotype, Age, and Feeding as Exemplified with a Conserved Edited Site in COG3.
Published in:
G3: Genes | Genomes | Genetics, 2016, v. 6, n. 2, p. 321, doi. 10.1534/g3.115.022251
By:
- Roux, Pierre-François;
- Frésard, Laure;
- Boutin, Morgane;
- Leroux, Sophie;
- Klopp, Christophe;
- Djari, Anis;
- Esquerré, Diane;
- Martin, Pascal GP;
- Zerjal, Tatiana;
- Gourichon, David;
- Pitel, Frédérique;
- Lagarrigue, Sandrine
Publication type:
Article
Natural enemies emerging in cereal fields in spring may contribute to biological control.
Published in:
Agricultural & Forest Entomology, 2022, v. 24, n. 3, p. 267, doi. 10.1111/afe.12490
By:
- Tortosa, Axelle;
- Duflot, Rémi;
- Rivers‐Moore, Justine;
- Ladet, Sylvie;
- Esquerré, Diane;
- Vialatte, Aude
Publication type:
Article
Correction to: Quantitative trait loci for resistance to Flavobacterium psychrophilum in rainbow trout: effect of the mode of infection and evidence of epistatic interactions.
Published in:
2019
By:
- Fraslin, Clémence;
- Dechamp, Nicolas;
- Bernard, Maria;
- Krieg, Francine;
- Hervet, Caroline;
- Guyomard, René;
- Esquerré, Diane;
- Barbieri, Johanna;
- Kuchly, Claire;
- Duchaud, Eric;
- Boudinot, Pierre;
- Rochat, Tatiana;
- Bernardet, Jean-François;
- Quillet, Edwige
Publication type:
Correction Notice
Quantitative trait loci for resistance to Flavobacterium psychrophilum in rainbow trout: effect of the mode of infection and evidence of epistatic interactions.
Published in:
Genetics Selection Evolution, 2018, v. 50, n. 1, p. 1, doi. 10.1186/s12711-018-0431-9
By:
- Fraslin, Clémence;
- Dechamp, Nicolas;
- Bernard, Maria;
- Krieg, Francine;
- Hervet, Caroline;
- Guyomard, René;
- Esquerré, Diane;
- Barbieri, Johanna;
- Kuchly, Claire;
- Duchaud, Eric;
- Boudinot, Pierre;
- Rochat, Tatiana;
- Bernardet, Jean-François;
- Quillet, Edwige
Publication type:
Article
A missense variant in the coil1A domain of the keratin 25 gene is associated with the dominant curly hair coat trait (Crd) in horse.
Published in:
Genetics Selection Evolution, 2017, v. 49, p. 1, doi. 10.1186/s12711-017-0359-5
By:
- Morgenthaler, Caroline;
- Diribarne, Mathieu;
- Capitan, Aurélien;
- Legendre, Rachel;
- Saintilan, Romain;
- Gilles, Maïlys;
- Esquerré, Diane;
- Juras, Rytis;
- Khanshour, Anas;
- Schibler, Laurent;
- Cothran, Gus
Publication type:
Article
Identification of copy number variation in French dairy and beef breeds using next-generation sequencing.
Published in:
Genetics Selection Evolution, 2017, v. 49, p. 1, doi. 10.1186/s12711-017-0352-z
By:
- Letaief, Rabia;
- Rebours, Emmanuelle;
- Grohs, Cécile;
- Meersseman, Cédric;
- Fritz, Sébastien;
- Trouilh, Lidwine;
- Esquerré, Diane;
- Barbieri, Johanna;
- Klopp, Christophe;
- Philippe, Romain;
- Blanquet, Véronique;
- Boichard, Didier;
- Rocha, Dominique;
- Boussaha, Mekki
Publication type:
Article
Author Correction: An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues.
Published in:
2021
By:
- Jehl, Frédéric;
- Muret, Kévin;
- Bernard, Maria;
- Boutin, Morgane;
- Lagoutte, Laetitia;
- Désert, Colette;
- Dehais, Patrice;
- Esquerré, Diane;
- Acloque, Hervé;
- Giuffra, Elisabetta;
- Djebali, Sarah;
- Foissac, Sylvain;
- Derrien, Thomas;
- Pitel, Frédérique;
- Zerjal, Tatiana;
- Klopp, Christophe;
- Lagarrigue, Sandrine
Publication type:
Correction Notice
An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues.
Published in:
Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-77586-x
By:
- Jehl, Frédéric;
- Muret, Kévin;
- Bernard, Maria;
- Boutin, Morgane;
- Lagoutte, Laetitia;
- Désert, Colette;
- Dehais, Patrice;
- Esquerré, Diane;
- Acloque, Hervé;
- Giuffra, Elisabetta;
- Djebali, Sarah;
- Foissac, Sylvain;
- Derrien, Thomas;
- Pitel, Frédérique;
- Zerjal, Tatiana;
- Klopp, Christophe;
- Lagarrigue, Sandrine
Publication type:
Article
Publisher Correction: Unraveling the effects of the gut microbiota composition and function on horse endurance physiology.
Published in:
2020
By:
- Plancade, Sandra;
- Clark, Allison;
- Philippe, Catherine;
- Helbling, Jean-Christophe;
- Moisan, Marie-Pierre;
- Esquerré, Diane;
- Le Moyec, Laurence;
- Robert, Céline;
- Barrey, Eric;
- Mach, Núria
Publication type:
Correction Notice
RNA-seq analysis of hepatic gene expression of common Pekin, Muscovy, mule and hinny ducks fed ad libitum or overfed.
Published in:
BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-018-5415-1
By:
- Hérault, Frédéric;
- Houée-Bigot, Magalie;
- Baéza, Elisabeth;
- Bouchez, Olivier;
- Esquerré, Diane;
- Klopp, Christophe;
- Diot, Christian
Publication type:
Article
A conceptual framework for the governance of multiple ecosystem services in agricultural landscapes.
Published in:
Landscape Ecology, 2019, v. 34, n. 7, p. 1653, doi. 10.1007/s10980-019-00829-4
By:
- Vialatte, Aude;
- Barnaud, Cecile;
- Blanco, Julien;
- Ouin, Annie;
- Choisis, Jean-Philippe;
- Andrieu, Emilie;
- Sheeren, David;
- Ladet, Sylvie;
- Deconchat, Marc;
- Clément, Floriane;
- Esquerré, Diane;
- Sirami, Clelia
Publication type:
Article
Survey of allele specific expression in bovine muscle.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-40781-6
By:
- Guillocheau, Gabriel M.;
- El Hou, Abdelmajid;
- Meersseman, Cédric;
- Esquerré, Diane;
- Rebours, Emmanuelle;
- Letaief, Rabia;
- Simao, Morgane;
- Hypolite, Nicolas;
- Bourneuf, Emmanuelle;
- Bruneau, Nicolas;
- Vaiman, Anne;
- Vander Jagt, Christy J.;
- Chamberlain, Amanda J.;
- Rocha, Dominique
Publication type:
Article
Identification of large intergenic non-coding RNAs in bovine muscle using next-generation transcriptomic sequencing.
Published in:
BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-499
By:
- Billerey, Coline;
- Boussaha, Mekki;
- Esquerré, Diane;
- Rebours, Emmanuelle;
- Djari, Anis;
- Meersseman, Cédric;
- Klopp, Christophe;
- Gautheret, Daniel;
- Rocha, Dominique
Publication type:
Article
Gene-based single nucleotide polymorphism discovery in bovine muscle using next-generation transcriptomic sequencing.
Published in:
BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-307
By:
- Djari, Anis;
- Esquerré, Diane;
- Weiss, Bernard;
- Martins, Frédéric;
- Meersseman, Cédric;
- Boussaha, Mekki;
- Klopp, Christophe;
- Rocha, Dominique
Publication type:
Article
Transcriptome analysis of porcine PBMCs after in vitro stimulation by LPS or PMA/ionomycin using an expression array targeting the pig immune response.
Published in:
BMC Genomics, 2010, v. 11, p. 292, doi. 10.1186/1471-2164-11-292
By:
- Yu Gao;
- Flori, Laurence;
- Lecardonnel, Jérome;
- Esquerré, Diane;
- Zhi-Liang Hu;
- Teillaud, Angélique;
- Lemonnier, Gaëtan;
- Lefèvre, Francois;
- Oswald, Isabelle P.;
- Rogel-Gaillard, Claire
Publication type:
Article
Long noncoding RNA repertoire in chicken liver and adipose tissue.
Published in:
Genetics Selection Evolution, 2017, v. 49, p. 1, doi. 10.1186/s12711-016-0275-0
By:
- Muret, Kévin;
- Klopp, Christophe;
- Wucher, Valentin;
- Esquerré, Diane;
- Legeai, Fabrice;
- Lecerf, Frédéric;
- Désert, Colette;
- Boutin, Morgane;
- Jehl, Frédéric;
- Acloque, Hervé;
- Giuffra, Elisabetta;
- Djebali, Sarah;
- Foissac, Sylvain;
- Derrien, Thomas;
- Lagarrigue, Sandrine
Publication type:
Article
Construction of a large collection of small genome variations in French dairy and beef breeds using whole-genome sequences.
Published in:
Genetics Selection Evolution, 2016, v. 48, p. 1, doi. 10.1186/s12711-016-0268-z
By:
- Boussaha, Mekki;
- Michot, Pauline;
- Letaief, Rabia;
- Hozé, Chris;
- Fritz, Sébastien;
- Grohs, Cécile;
- Esquerré, Diane;
- Duchesne, Amandine;
- Philippe, Romain;
- Blanquet, Véronique;
- Phocas, Florence;
- Floriot, Sandrine;
- Rocha, Dominique;
- Klopp, Christophe;
- Capitan, Aurélien;
- Boichard, Didier
Publication type:
Article
The Effects of Weaning Methods on Gut Microbiota Composition and Horse Physiology.
Published in:
Frontiers in Physiology, 2017, p. 1, doi. 10.3389/fphys.2017.00535
By:
- Mach, Núria;
- Foury, Aline;
- Kittelmann, Sandra;
- Reigner, Fabrice;
- Moroldo, Marco;
- Ballester, Maria;
- Esquerré, Diane;
- Rivière, Julie;
- Sallé, Guillaume;
- Gérard, Philippe;
- Moisan, Marie-Pierre;
- Lansade, Léa
Publication type:
Article
Identification of a t(3;4)(p1.3;q1.5) translocation breakpoint in pigs using somatic cell hybrid mapping and high-resolution mate-pair sequencing.
Published in:
PLoS ONE, 2017, v. 12, n. 11, p. 1, doi. 10.1371/journal.pone.0187617
By:
- Fève, Katia;
- Foissac, Sylvain;
- Pinton, Alain;
- Mompart, Florence;
- Esquerré, Diane;
- Faraut, Thomas;
- Yerle, Martine;
- Riquet, Juliette
Publication type:
Article
Genetic variability of the activity of bidirectional promoters: a pilot study in bovine muscle.
Published in:
DNA Research, 2017, v. 24, n. 3, p. 221, doi. 10.1093/dnares/dsx004
By:
- Meersseman, Cédric;
- Letaief, Rabia;
- Léjard, Véronique;
- Rebours, Emmanuelle;
- Guillocheau, Gabriel;
- Esquerré, Diane;
- Djari, Anis;
- Chamberlain, Amanda;
- Jagt, Christy Vander;
- Klopp, Christophe;
- Boussaha, Mekki;
- Renand, Gilles;
- Maftah, Abderrahman;
- Petit, Daniel;
- Rocha, Dominique
Publication type:
Article

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