Works by Engelmann, Julia C.

Results: 35

Microbial Communities on Plastic Polymers in the Mediterranean Sea.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.673553

By:

Vaksmaa, Annika;
Knittel, Katrin;
Abdala Asbun, Alejandro;
Goudriaan, Maaike;
Ellrott, Andreas;
Witte, Harry J.;
Vollmer, Ina;
Meirer, Florian;
Lott, Christian;
Weber, Miriam;
Engelmann, Julia C.;
Niemann, Helge

Publication type:

Article

High CD206 levels in Hodgkin lymphoma‐educated macrophages are linked to matrix‐remodeling and lymphoma dissemination.

Published in:

Molecular Oncology, 2020, v. 14, n. 3, p. 571, doi. 10.1002/1878-0261.12616

By:

Arlt, Annekatrin;
Bonin, Frederike;
Rehberg, Thorsten;
Perez‐Rubio, Paula;
Engelmann, Julia C.;
Limm, Katharina;
Reinke, Sarah;
Dullin, Christian;
Sun, Xueni;
Specht, Rieke;
Maulhardt, Markus;
Linke, Franziska;
Bunt, Gertrude;
Klapper, Wolfram;
Vockerodt, Martina;
Wilting, Jörg;
Pukrop, Tobias;
Dettmer, Katja;
Gronwald, Wolfram;
Oefner, Peter J.

Publication type:

Article

Cooperative STAT/NF-κB signaling regulates lymphoma metabolic reprogramming and aberrant GOT2 expression.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03803-x

By:

Feist, Maren;
Schwarzfischer, Philipp;
Heinrich, Paul;
Sun, Xueni;
Kemper, Judith;
von Bonin, Frederike;
Perez-Rubio, Paula;
Taruttis, Franziska;
Rehberg, Thorsten;
Dettmer, Katja;
Gronwald, Wolfram;
Reinders, Jörg;
Engelmann, Julia C.;
Dudek, Jan;
Klapper, Wolfram;
Trümper, Lorenz;
Spang, Rainer;
Oefner, Peter J.;
Kube, Dieter

Publication type:

Article

Phosphorylation of Argonaute proteins affects mRNA binding and is essential for micro RNA-guided gene silencing in vivo.

Published in:

EMBO Journal, 2017, v. 36, n. 14, p. 2088, doi. 10.15252/embj.201696386

By:

Quévillon Huberdeau, Miguel;
Zeitler, Daniela M;
Hauptmann, Judith;
Bruckmann, Astrid;
Fressigné, Lucile;
Danner, Johannes;
Piquet, Sandra;
Strieder, Nicholas;
Engelmann, Julia C;
Jannot, Guillaume;
Deutzmann, Rainer;
Simard, Martin J;
Meister, Gunter

Publication type:

Article

Causal Modeling of Cancer-Stromal Communication Identifies PAPPA as a Novel Stroma-Secreted Factor Activating NFκB Signaling in Hepatocellular Carcinoma.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.pcbi.1004293

By:

Engelmann, Julia C.;
Amann, Thomas;
Ott-Rötzer, Birgitta;
Nützel, Margit;
Reinders, Yvonne;
Reinders, Jörg;
Thasler, Wolfgang E.;
Kristl, Theresa;
Teufel, Andreas;
Huber, Christian G.;
Oefner, Peter J.;
Spang, Rainer;
Hellerbrand, Claus

Publication type:

Article

Zygotic Genome Activation Occurs Shortly after Fertilization in Maize.

Published in:

Plant Cell, 2017, v. 29, n. 9, p. 2106, doi. 10.1105/tpc.17.00099

By:

Chen, Junyi;
Strieder, Nicholas;
Krohn, Nadia G.;
Cyprys, Philipp;
Sprunck, Stefanie;
Engelmann, Julia C.;
Dresselhaus, Thomas

Publication type:

Article

Correction: Slug Is Increased in Vascular Remodeling and Induces a Smooth Muscle Cell Proliferative Phenotype.

Published in:

2016

By:

Coll-Bonfill, Núria;
Peinado, Victor I.;
Pisano, María V.;
Párrizas, Marcelina;
Blanco, Isabel;
Evers, Maurits;
Engelmann, Julia C.;
García-Lucio, Jessica;
Tura-Ceide, Olga;
Meister, Gunter;
Barberà, Joan Albert;
Musri, Melina M.

Publication type:

Correction Notice

Slug Is Increased in Vascular Remodeling and Induces a Smooth Muscle Cell Proliferative Phenotype.

Published in:

PLoS ONE, 2016, v. 11, n. 7, p. 1, doi. 10.1371/journal.pone.0159460

By:

Coll-Bonfill, Núria;
Peinado, Victor I.;
Pisano, María V.;
Párrizas, Marcelina;
Blanco, Isabel;
Evers, Maurits;
Engelmann, Julia C.;
García-Lucio, Jessica;
Tura-Ceide, Olga;
Meister, Gunter;
Barberà, Joan Albert;
Musri, Melina M.

Publication type:

Article

Identification of ADGRE5 as discriminating MYC target between Burkitt lymphoma and diffuse large B-cell lymphoma.

Published in:

2019

By:

Kleo, Karsten;
Dimitrova, Lora;
Oker, Elisabeth;
Tomaszewski, Nancy;
Berg, Erika;
Taruttis, Franziska;
Engelmann, Julia C.;
Schwarzfischer, Philipp;
Reinders, Jörg;
Spang, Rainer;
Gronwald, Wolfram;
Oefner, Peter J.;
Hummel, Michael

Publication type:

journal article

FastqPuri: high-performance preprocessing of RNA-seq data.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-2799-0

By:

Pérez-Rubio, Paula;
Lottaz, Claudio;
Engelmann, Julia C.

Publication type:

Article

Diel and seasonal methane dynamics in the shallow and turbulent Wadden Sea.

Published in:

Biogeosciences Discussions, 2023, p. 1, doi. 10.5194/egusphere-2023-983

By:

de Groot, Tim R.;
Mol, Anne M.;
Mesdag, Katherine;
Ramond, Pierre;
Ndhlovu, Rachel;
Engelmann, Julia C.;
Röckmann, Thomas;
Niemann, Helge

Publication type:

Article

Biosynthesis of Long Chain Alkyl Diols and Long Chain Alkenols in Nannochloropsis spp. (Eustigmatophyceae).

Published in:

Plant & Cell Physiology, 2019, v. 60, n. 8, p. 1666, doi. 10.1093/pcp/pcz078

By:

Balzano, Sergio;
Villanueva, Laura;
Bar, Marijke de;
Canavesi, Diana X Sahonero;
Yildiz, Caglar;
Engelmann, Julia C;
Marechal, Eric;
Lupette, Josselin;
Damsté, Jaap S Sinninghe;
Schouten, Stefan

Publication type:

Article

Transcriptome sequencing of melanocytic nevi and melanomas from Grm1 transgenic mice to determine melanoma driver mutations.

Published in:

Pigment Cell & Melanoma Research, 2014, v. 27, n. 4, p. 678, doi. 10.1111/pcmr.12244

By:

Jel, Miriam M.;
Engelmann, Julia C.;
Kunz, Manfred;
Schiffner, Susanne;
Kuphal, Silke;
Bosserhoff, Anja K.

Publication type:

Article

Contrasting responses of different mixotrophic protists to light and nutrient availability.

Published in:

Limnology & Oceanography, 2024, v. 69, n. 5, p. 1233, doi. 10.1002/lno.12565

By:

Koppelle, Sebastiaan;
Ivanković, Marina;
Bengtsson, Mia M.;
Preiler, Christian;
Huisman, Jef;
Brussaard, Corina P. D.;
Engelmann, Julia C.;
Ptáčník, Robert;
Wilken, Susanne

Publication type:

Article

Explorative data analysis of MCL reveals gene expression networks implicated in survival and prognosis supported by explorative CGH analysis.

Published in:

BMC Cancer, 2008, v. 8, p. 1, doi. 10.1186/1471-2407-8-106

By:

Blenk, Steffen;
Engelmann, Julia C.;
Pinkert, Stefan;
Weniger, Markus;
Schultz, Jörg;
Rosenwald, Andreas;
Müller-Hermelink, Hans K.;
Müller, Tobias;
Dandekar, Thomas

Publication type:

Article

Methane oxidation in anoxic lake water stimulated by nitrate and sulfate addition.

Published in:

Environmental Microbiology, 2020, v. 22, n. 2, p. 766, doi. 10.1111/1462-2920.14886

By:

Grinsven, Sigrid;
Sinninghe Damsté, Jaap S.;
Abdala Asbun, Alejandro;
Engelmann, Julia C.;
Harrison, John;
Villanueva, Laura

Publication type:

Article

DNA Methylation Alterations Exhibit Intraindividual Stability and Interindividual Heterogeneity in Prostate Cancer Metastases.

Published in:

Science Translational Medicine, 2013, v. 5, n. 169, p. 1, doi. 10.1126/scitranslmed.3005211

By:

Aryee, Martin J.;
Wennuan Liu;
Engelmann, Julia C.;
Nuhn, Philipp;
Gurel, Meltem;
Haffner, Michael C.;
Esopi, David;
Irizarry, Rafael A.;
Getzenberg, Robert H.;
Nelson, William G.;
Jun Luo;
Jianfeng Xu;
Isaacs, William B.;
Bova, G. Steven;
Yegnasubramanian, Srinivasan

Publication type:

Article

Is gene activity in plant cells affected by UMTS-irradiation? A whole genome approach.

Published in:

Advances & Applications in Bioinformatics & Chemistry, 2008, v. 1, p. 71

By:

Engelmann, Julia C.;
Deeken, Rosalia;
Müller, Tobias;
Nimtz, Günter;
Roelfsema, M. Rob G.;
Hedrich, Rainer

Publication type:

Article

Modelling cross-hybridization on phylogenetic DNA microarrays increases the detection power of closely related species.

Published in:

Molecular Ecology Resources, 2009, v. 9, n. 1, p. 83, doi. 10.1111/j.1755-0998.2008.02199.x

By:

ENGELMANN, JULIA C.;
RAHMANN, SVEN;
WOLF, MATTHIAS;
SCHULTZ, JÖRG;
FRITZILAS, EPAMEINONDAS;
KNEITZ, SUSANNE;
DANDEKAR, THOMAS;
MÜLLER, TOBIAS

Publication type:

Article

miRA: adaptable novel miRNA identification in plants using small RNA sequencing data.

Published in:

BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/s12859-015-0798-3

By:

Evers, Maurits;
Huttner, Michael;
Dueck, Anne;
Meister, Gunter;
Engelmann, Julia C.

Publication type:

Article

Genome Expression Pathway Analysis Tool -- Analysis and visualization of microarray gene expression data under genomic, proteomic and metabolic context.

Published in:

BMC Bioinformatics, 2007, v. 8, p. 1, doi. 10.1186/1471-2105-8-179

By:

Weniger, Markus;
Engelmann, Julia C;
Schultz, Jörg

Publication type:

Article

A statistical approach to virtual cellular experiments: improved causal discovery using accumulation IDA (aIDA).

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3807, doi. 10.1093/bioinformatics/btv461

By:

Taruttis, Franziska;
Spang, Rainer;
Engelmann, Julia C.

Publication type:

Article

Spatial and temporal variation of Antarctic microbial interactions: a study around the west Antarctic Peninsula.

Published in:

Environmental Microbiome, 2025, v. 20, n. 1, p. 1, doi. 10.1186/s40793-025-00663-z

By:

Sow, Swan L. S.;
van de Poll, Willem H.;
Eveleth, Rachel;
Rich, Jeremy J.;
Ducklow, Hugh W.;
Rozema, Patrick D.;
Luria, Catherine M.;
Bolhuis, Henk;
Meredith, Michael P.;
Amaral-Zettler, Linda A.;
Engelmann, Julia C.

Publication type:

Article

Organic matter degradation in the deep, sulfidic waters of the Black Sea: insights into the ecophysiology of novel anaerobic bacteria.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01816-x

By:

Yadav, Subhash;
Koenen, Michel;
Bale, Nicole J.;
Reitsma, Wietse;
Engelmann, Julia C.;
Stefanova, Kremena;
Damsté, Jaap S. Sinninghe;
Villanueva, Laura

Publication type:

Article

Organic matter degradation in the deep, sulfidic waters of the Black Sea: insights into the ecophysiology of novel anaerobic bacteria.

Published in:

Microbiome, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40168-024-01816-x

By:

Yadav, Subhash;
Koenen, Michel;
Bale, Nicole J.;
Reitsma, Wietse;
Engelmann, Julia C.;
Stefanova, Kremena;
Damsté, Jaap S. Sinninghe;
Villanueva, Laura

Publication type:

Article

siPools: highly complex but accurately defined siRNA pools eliminate off-target effects.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 12, p. 8049, doi. 10.1093/nar/gku480

By:

Hannus, Michael;
Beitzinger, Michaela;
Engelmann, Julia C.;
Weickert, Marie-Theresa;
Spang, Rainer;
Hannus, Stefan;
Meister, Gunter

Publication type:

Article

Early Senescence and Cell Death in Arabidopsis saul1 Mutants Involves the PAD4-Dependent Salicylic Acid Pathway<sup>1[W][OA]</sup>.

Published in:

Plant Physiology, 2012, v. 159, n. 4, p. 1477, doi. 10.1104/pp.112.196220

By:

Vogelmann, Katja;
Drechsel, Gabriele;
Bergler, Johannes;
Subert, Christa;
Philippar, Katrin;
Soll, Jiirgen;
Engelmann, Julia C.;
Engelsdorf, Timo;
Voll, Lars M.;
Hoth, Stefan

Publication type:

Article

Learning from Embryogenesis—A Comparative Expression Analysis in Melanoblast Differentiation and Tumorigenesis Reveals miRNAs Driving Melanoma Development.

Published in:

Journal of Clinical Medicine, 2021, v. 10, n. 11, p. 2259, doi. 10.3390/jcm10112259

By:

Linck-Paulus, Lisa;
Lämmerhirt, Lisa;
Völler, Daniel;
Meyer, Katharina;
Engelmann, Julia C.;
Spang, Rainer;
Eichner, Norbert;
Meister, Gunter;
Kuphal, Silke;
Bosserhoff, Anja Katrin

Publication type:

Article

Cascabel : A Scalable and Versatile Amplicon Sequence Data Analysis Pipeline Delivering Reproducible and Documented Results.

Published in:

Frontiers in Genetics, 2020, v. 11, p. N.PAG, doi. 10.3389/fgene.2020.489357

By:

Abdala Asbun, Alejandro;
Besseling, Marc A.;
Balzano, Sergio;
van Bleijswijk, Judith D. L.;
Witte, Harry J.;
Villanueva, Laura;
Engelmann, Julia C.

Publication type:

Article

Synergy of interleukin 10 and toll-like receptor 9 signalling in B cell proliferation: Implications for lymphoma pathogenesis.

Published in:

International Journal of Cancer, 2017, v. 140, n. 5, p. 1147, doi. 10.1002/ijc.30444

By:

Feist, Maren;
Kemper, Judith;
Taruttis, Franziska;
Rehberg, Thorsten;
Engelmann, Julia C.;
Gronwald, Wolfram;
Hummel, Michael;
Spang, Rainer;
Kube, Dieter

Publication type:

Article

A Least Angle Regression Model for the Prediction of Canonical and Non-Canonical miRNA-mRNA Interactions.

Published in:

PLoS ONE, 2012, v. 7, n. 7, p. 1, doi. 10.1371/journal.pone.0040634

By:

Engelmann, Julia C.;
Spang, Rainer

Publication type:

Article

Gene silencing pathways found in the green alga Volvox carteri reveal insights into evolution and origins of small RNA systems in plants.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3202-4

By:

Dueck, Anne;
Evers, Maurits;
Henz, Stefan R.;
Unger, Katharina;
Eichner, Norbert;
Merkl, Rainer;
Berezikov, Eugene;
Engelmann, Julia C.;
Weigel, Detlef;
Wenzl, Stephan;
Meister, Gunter

Publication type:

Article

Analysis of a coastal North Sea fish community: Comparison of aquatic environmental DNA concentrations to fish catches.

Published in:

Environmental DNA, 2020, v. 2, n. 4, p. 429, doi. 10.1002/edn3.67

By:

Bleijswijk, Judith D. L.;
Engelmann, Julia C.;
Klunder, Lise;
Witte, Harry J.;
Witte, Johannes IJ.;
Veer, Henk W.

Publication type:

Article

Tardigrade workbench: comparing stress-related proteins, sequence-similar and functional protein clusters as well as RNA elements in tardigrades.

Published in:

BMC Genomics, 2009, v. 10, p. 469, doi. 10.1186/1471-2164-10-469

By:

Förster, Frank;
Liang, Chuanguang;
Shkumatov, Alexander;
Beisser, Daniela;
Engelmann, Julia C.;
Schnölzer, Martina;
Frohme, Marcus;
Müller, Tobias;
Schill, Ralph O.;
Dandekar, Thomas

Publication type:

Article

Transcriptome Analysis in Tardigrade Species Reveals Specific Molecular Pathways for Stress Adaptations.

Published in:

Bioinformatics & Biology Insights, 2012, n. 6, p. 69, doi. 10.4137/BBI.S9150

By:

Förster, Frank;
Beisser, Daniela;
Grohme, Markus A.;
Chunguang Liang;
Mali, Brahim;
Siegl, Alexander Matthias;
Engelmann, Julia C.;
Shkumatov, Alexander V.;
Schokraie, Elham;
Müller, Tobias;
Schnölzer, Martina;
Schill, Ralph O.;
Frohme, Marcus;
Dandekar, Thomas

Publication type:

Article