Found: 26

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  • Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources.

    Published in:
    Genetics, 2023, v. 224, n. 1, p. 1, doi. 10.1093/genetics/iyac191
    By:
    • Wong, Edith D.;
    • Miyasato, Stuart R.;
    • Aleksander, Suzi;
    • Karra, Kalpana;
    • Nash, Robert S.;
    • Skrzypek, Marek S.;
    • Weng, Shuai;
    • Engel, Stacia R.;
    • Cherry, J. Michael
    Publication type:
    Article

  • New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources.

    Published in:
    Genetics, 2022, v. 220, n. 4, p. 1, doi. 10.1093/genetics/iyab224
    By:
    • Engel, Stacia R.;
    • Wong, Edith D.;
    • Nash, Robert S.;
    • Aleksander, Suzi;
    • Alexander, Micheal;
    • Douglass, Eric;
    • Karra, Kalpana;
    • Miyasato, Stuart R.;
    • Simison, Matt;
    • Skrzypek, Marek S.;
    • Weng, Shuai;
    • Cherry, J. Michael
    Publication type:
    Article

  • Transcriptome visualization and data availability at the Saccharomyces Genome Database.

    Published in:
    Nucleic Acids Research, 2020, v. 48, n. D1, p. D743, doi. 10.1093/nar/gkz892
    By:
    • Ng, Patrick C;
    • Wong, Edith D;
    • MacPherson, Kevin A;
    • Aleksander, Suzi;
    • Argasinska, Joanna;
    • Dunn, Barbara;
    • Nash, Robert S;
    • Skrzypek, Marek S;
    • Gondwe, Felix;
    • Jha, Sagar;
    • Karra, Kalpana;
    • Weng, Shuai;
    • Miyasato, Stuart;
    • Simison, Matt;
    • Engel, Stacia R;
    • Cherry, J Michael
    Publication type:
    Article

  • Automated generation of gene summaries at the Alliance of Genome Resources.

    Published in:
    Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa037
    By:
    • Kishore, Ranjana;
    • Arnaboldi, Valerio;
    • Slyke, Ceri E Van;
    • Chan, Juancarlos;
    • Nash, Robert S;
    • Urbano, Jose M;
    • Dolan, Mary E;
    • Engel, Stacia R;
    • Shimoyama, Mary;
    • Sternberg, Paul W;
    • Resources, the Alliance of Genome
    Publication type:
    Article

  • Incorporation of a unified protein abundance dataset into the Saccharomyces genome database.

    Published in:
    Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa008
    By:
    • Nash, Robert S;
    • Weng, Shuai;
    • Karra, Kalpana;
    • Wong, Edith D;
    • Engel, Stacia R;
    • Cherry, J Michael;
    • Project, SGD
    Publication type:
    Article

  • Annotation of gene product function from high-throughput studies using the Gene Ontology.

    Published in:
    Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz007
    By:
    • Attrill, Helen;
    • Gaudet, Pascale;
    • Huntley, Rachael P;
    • Lovering, Ruth C;
    • Engel, Stacia R;
    • Poux, Sylvain;
    • Auken, Kimberly M Van;
    • Georghiou, George;
    • Chibucos, Marcus C;
    • Berardini, Tanya Z;
    • Wood, Valerie;
    • Drabkin, Harold;
    • Fey, Petra;
    • Garmiri, Penelope;
    • Harris, Midori A;
    • Sawford, Tony;
    • Reiser, Leonore;
    • Tauber, Rebecca;
    • Toro, Sabrina;
    • Consortium, The Gene Ontology
    Publication type:
    Article

  • Integration of macromolecular complex data into the Saccharomyces Genome Database.

    Published in:
    Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz008
    By:
    • Wong, Edith D;
    • Skrzypek, Marek S;
    • Weng, Shuai;
    • Binkley, Gail;
    • Meldal, Birgit H M;
    • Perfetto, Livia;
    • Orchard, Sandra E;
    • Engel, Stacia R;
    • Cherry, J Michael;
    • Project, the SGD
    Publication type:
    Article

  • Saccharomycesgenome database informs human biology.

    Published in:
    Nucleic Acids Research, 2018, v. 46, n. D1, p. D736, doi. 10.1093/nar/gkx1112
    By:
    • Skrzypek, Marek S;
    • Nash, Robert S;
    • Wong, Edith D;
    • MacPherson, Kevin A;
    • Hellerstedt, Sage T;
    • Engel, Stacia R;
    • Karra, Kalpana;
    • Weng, Shuai;
    • Sheppard, Travis K;
    • Binkley, Gail
    Publication type:
    Article

  • Updated regulation curation model at the Saccharomyces Genome Database.

    Published in:
    Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay007
    By:
    • Engel, Stacia R;
    • Skrzypek, Marek S;
    • Hellerstedt, Sage T;
    • Wong, Edith D;
    • Nash, Robert S;
    • Weng, Shuai;
    • Binkley, Gail;
    • Sheppard, Travis K;
    • Karra, Kalpana;
    • Cherry, J Michael
    Publication type:
    Article

  • Curated protein information in the Saccharomyces genome database.

    Published in:
    Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax011
    By:
    • Hellerstedt, Sage T.;
    • Nash, Robert S.;
    • Shuai Weng;
    • Paskov, Kelley M.;
    • Wong, Edith D.;
    • Karra, Kalpana;
    • Engel, Stacia R.;
    • Cherry, J. Michael
    Publication type:
    Article

  • Outreach and online training services at the Saccharomyces Genome Database.

    Published in:
    Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax002
    By:
    • MacPherson, Kevin A.;
    • Starr, Barry;
    • Wong, Edith D.;
    • Dalusag, Kyla S.;
    • Hellerstedt, Sage T.;
    • Lang, Olivia W.;
    • Nash, Robert S.;
    • Skrzypek, Marek S.;
    • Engel, Stacia R.;
    • Cherry, J. Michael
    Publication type:
    Article

  • The Saccharomyces Genome Database Variant Viewer.

    Published in:
    Nucleic Acids Research, 2016, v. 44, n. 1, p. D698, doi. 10.1093/nar/gkv1250
    By:
    • Sheppard, Travis K.;
    • Hitz, Benjamin C.;
    • Engel, Stacia R.;
    • Song, Giltae;
    • Balakrishnan, Rama;
    • Binkley, Gail;
    • Costanzo, Maria C.;
    • Dalusag, Kyla S.;
    • Demeter, Janos;
    • Hellerstedt, Sage T.;
    • Karra, Kalpana;
    • Nash, Robert S.;
    • Paskov, Kelley M.;
    • Skrzypek, Marek S.;
    • Shuai Weng;
    • Wong, Edith D.;
    • Cherry, J. Michael
    Publication type:
    Article

  • From one to many: expanding the Saccharomyces cerevisiae reference genome panel.

    Published in:
    Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw020
    By:
    • Engel, Stacia R.;
    • Shuai Weng;
    • Binkley, Gail;
    • Paskov, Kelley;
    • Song, Giltae;
    • Cherry, J. Michael
    Publication type:
    Article

  • Saccharomyces genome database provides new regulation data.

    Published in:
    Nucleic Acids Research, 2014, v. 42, n. D1, p. D717, doi. 10.1093/nar/gkt1158
    By:
    • Costanzo, Maria C.;
    • Engel, Stacia R.;
    • Wong, Edith D.;
    • Lloyd, Paul;
    • Karra, Kalpana;
    • Chan, Esther T.;
    • Weng, Shuai;
    • Paskov, Kelley M.;
    • Roe, Greg R.;
    • Binkley, Gail;
    • Hitz, Benjamin C.;
    • Cherry, J. Michael
    Publication type:
    Article

  • The new modern era of yeast genomics: community sequencing and the resulting annotation of multiple Saccharomyces cerevisiae strains at the Saccharomyces Genome Database.

    Published in:
    Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat012
    By:
    • Engel, Stacia R.;
    • Cherry, J. Michael
    Publication type:
    Article

  • Saccharomyces Genome Database: the genomics resource of budding yeast.

    Published in:
    Nucleic Acids Research, 2012, p. D700, doi. 10.1093/nar/gkr1029
    By:
    • Cherry, J. Michael;
    • Hong, Eurie L.;
    • Amundsen, Craig;
    • Balakrishnan, Rama;
    • Binkley, Gail;
    • Chan, Esther T.;
    • Christie, Karen R.;
    • Costanzo, Maria C.;
    • Dwight, Selina S.;
    • Engel, Stacia R.;
    • Fisk, Dianna G.;
    • Hirschman, Jodi E.;
    • Hitz, Benjamin C.;
    • Karra, Kalpana;
    • Krieger, Cynthia J.;
    • Miyasato, Stuart R.;
    • Nash, Rob S.;
    • Park, Julie;
    • Skrzypek, Marek S.;
    • Simison, Matt
    Publication type:
    Article

  • Saccharomyces Genome Database provides mutant phenotype data.

    Published in:
    Nucleic Acids Research, 2010, v. 38, p. D433, doi. 10.1093/nar/gkp917
    By:
    • Engel, Stacia R.;
    • Balakrishnan, Rama;
    • Binkley, Gail;
    • Christie, Karen R.;
    • Costanzo, Maria C.;
    • Dwight, Selina S.;
    • Fisk, Dianna G.;
    • Hirschman, Jodi E.;
    • Hitz, Benjamin C.;
    • Hong, Eurie L.;
    • Krieger, Cynthia J.;
    • Livstone, Michael S.;
    • Miyasato, Stuart R.;
    • Nash, Robert;
    • Oughtred, Rose;
    • Park, Julie;
    • Skrzypek, Marek S.;
    • Shuai Weng;
    • Wong, Edith D.;
    • Dolinski, Kara
    Publication type:
    Article

  • New mutant phenotype data curation system in the Saccharomyces Genome Database.

    Published in:
    Database: The Journal of Biological Databases & Curation, 2009, v. 2009, p. 1, doi. 10.1093/database/bap001
    By:
    • Costanzo, Maria C.;
    • Skrzypek, Marek S.;
    • Nash, Robert;
    • Wong, Edith;
    • Binkley, Gail;
    • Engel, Stacia R.;
    • Hitz, Benjamin;
    • Hong, Eurie L.;
    • Cherry, J. Michael
    Publication type:
    Article

  • Gene Ontology annotations at SGD: new data sources and annotation methods.

    Published in:
    Nucleic Acids Research, 2008, v. 36, p. D577
    By:
    • Hong, Eurie L.;
    • Balakrishnan, Rama;
    • Dong, Qing;
    • Christie, Karen R.;
    • Park, Julie;
    • Binkley, Gail;
    • Costanzo, Maria C.;
    • Dwight, Selina S.;
    • Engel, Stacia R.;
    • Fisk, Dianna G.;
    • Hirschman, Jodi E.;
    • Hitz, Benjamin C.;
    • Krieger, Cynthia J.;
    • Livstone, Michael S.;
    • Miyasato, Stuart R.;
    • Nash, Robert S.;
    • Oughtred, Rose;
    • Skrzypek, Marek S.;
    • Weng, Shuai;
    • Wong, Edith D.
    Publication type:
    Article

  • Expanded protein information at SGD: new pages and proteome browser.

    Published in:
    Nucleic Acids Research, 2007, v. 35, p. d468, doi. 10.1093/nar/gkl931
    By:
    • Nash, Robert;
    • Weng, Shuai;
    • Hitz, Ben;
    • Balakrishnan, Rama;
    • Christie, Karen R.;
    • Costanzo, Maria C.;
    • Dwight, Selina S.;
    • Engel, Stacia R.;
    • Fisk, Dianna G.;
    • Hirschman, Jodi E.;
    • Hong, Eurie L.;
    • Livstone, Michael S.;
    • Oughtred, Rose;
    • Park, Julie;
    • Skrzypek, Marek;
    • Theesfeld, Chandra L.;
    • Binkley, Gail;
    • Dong, Qing;
    • Lane, Christopher;
    • Miyasato, Stuart
    Publication type:
    Article

  • Saccharomyces cerevisiae S288C genome annotation: a working hypothesis.

    Published in:
    Yeast, 2006, v. 23, n. 12, p. 857, doi. 10.1002/yea.1400
    By:
    • Fisk, Dianna G.;
    • Ball, Catherine A.;
    • Dolinski, Kara;
    • Engel, Stacia R.;
    • Hong, Eurie L.;
    • Issel-Tarver, Laurie;
    • Schwartz, Katja;
    • Sethuraman, Anand;
    • Botstein, David;
    • Michael Cherry, J.
    Publication type:
    Article

  • Genome Snapshot: a new resource at the Saccharomyces Genome Database (SGD) presenting an overview of the Saccharomyces cerevisiae genome.

    Published in:
    Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d442, doi. 10.1093/nar/gkj117
    By:
    • Hirschman, Jodi E.;
    • Balakrishnan, Rama;
    • Christie, Karen R.;
    • Costanzo, Maria C.;
    • Dwight, Selina S.;
    • Engel, Stacia R.;
    • Fisk, Dianna G.;
    • Hong, Eurie L.;
    • Livstone, Michael S.;
    • Nash, Robert;
    • Park, Julie;
    • Oughtred, Rose;
    • Skrzypek, Marek;
    • Starr, Barry;
    • Theesfeld, Chandra L.;
    • Williams, Jennifer;
    • Andrada, Rey;
    • Binkley, Gail;
    • Dong, Qing;
    • Lane, Christopher
    Publication type:
    Article

  • Fungal BLAST and Model Organism BLASTP Best Hits: new comparison resources at the Saccharomyces Genome Database (SGD).

    Published in:
    Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d374
    By:
    • Balakrishnan, Rama;
    • Christie, Karen R.;
    • Costanzo, Maria C.;
    • Dolinski, Kara;
    • Dwight, Selina S.;
    • Engel, Stacia R.;
    • Fisk, Dianna G.;
    • Hirschman, Jodi E.;
    • Hong, Eurie L.;
    • Nash, Robert;
    • Oughtred, Rose;
    • Skrzypek, Marek;
    • Theesfeld, Chandra L.;
    • Binkley, Gail;
    • Dong, Qing;
    • Lane, Christopher;
    • Sethuraman, Anand;
    • Weng, Shuai;
    • Botstein, David;
    • Cherry, J. Michael
    Publication type:
    Article

  • Specific Status of Propithecus spp.

    Published in:
    International Journal of Primatology, 2004, v. 25, n. 4, p. 875, doi. 10.1023/B:IJOP.0000029127.31190.e9
    By:
    • Mayor, Mireya I.;
    • Sommer, Julie A.;
    • Houck, Marlys L.;
    • Zaonarivelo, John R.;
    • Wright, Patricia C.;
    • Ingram, Colleen;
    • Engel, Stacia R.;
    • Louis Jr., Edward E.
    Publication type:
    Article

  • Saccharomyces genome database.

    Published in:
    Briefings in Bioinformatics, 2004, v. 5, n. 1, p. 9, doi. 10.1093/bib/5.1.9
    By:
    • Dwight, Selina S.;
    • Balakrishnan, Rama;
    • Christie, Karen R.;
    • Costanzo, Maria C.;
    • Dolinski, Kara;
    • Engel, Stacia R.;
    • Feierbach, Becket.;
    • Fisk, Dianna G.;
    • Hirschman, Jodi;
    • Hong, Eurie L.;
    • IsselTarver, Laurie;
    • Nash, Robert S.;
    • Sethuraman, Anand;
    • Starr, Barry;
    • Theesfeld, Chandra L.;
    • Andrada, Rey;
    • Binkley, Gail;
    • Qing Dong;
    • Lane, Christopher;
    • Schroeder, Mark
    Publication type:
    Article

  • Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms.

    Published in:
    Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d311
    By:
    • Christie, Karen R.;
    • Weng, Shuai;
    • Balakrishnan, Rama;
    • Costanzo, Maria C.;
    • Dolinski, Kara;
    • Dwight, Selina S.;
    • Engel, Stacia R.;
    • Feierbach, Becket;
    • Fisk, Dianna G.;
    • Hirschman, Jodi E.;
    • Hong, Eurie L.;
    • Issel‐Tarver, Laurie;
    • Nash, Robert;
    • Sethuraman, Anand;
    • Starr, Barry;
    • Theesfeld, Chandra L.;
    • Andrada, Rey;
    • Binkley, Gail;
    • Dong, Qing;
    • Lane, Christopher
    Publication type:
    Article