Works by Ence Yang

Results: 32

Rapid identification of pathogens associated with ventilator-associated pneumonia by Nanopore sequencing.

Published in:

2021

By:

Wu, Nan;
Ranjan, Piyush;
Tao, Changyu;
Liu, Chao;
Yang, Ence;
He, Bei;
Erb-Downward, John R.;
Bo, Shining;
Zheng, Jiajia;
Guo, Chenxia;
Liu, Beibei;
Sun, Lina;
Yan, Wei;
Wang, Meng;
Wang, Wenting;
Wen, Jianing;
Yang, Ping;
Yang, Lin;
Tian, Qiaoshan;
Dickson, Robert P.

Publication type:

journal article

circFL-seq reveals full-length circular RNAs with rolling circular reverse transcription and nanopore sequencing.

Published in:

eLife, 2021, p. 1, doi. 10.7554/eLife.69457

By:

Zelin Liu;
Changyu Tao;
Shiwei Li;
Minghao Du;
Yongtai Bai;
Xueyan Hu;
Yu Li;
Jian Chen;
Ence Yang

Publication type:

Article

A transcription‐independent mechanism determines rapid periodic fluctuations of BRCA1 expression.

Published in:

EMBO Journal, 2023, v. 42, n. 15, p. 1, doi. 10.15252/embj.2022111951

By:

Nie, Chen;
Zhou, Xiao Albert;
Zhou, Jiadong;
Liu, Zelin;
Gu, Yangyang;
Liu, Wanchang;
Zhan, Jun;
Li, Shiwei;
Xiong, Yundong;
Zhou, Mei;
Shen, Qinjian;
Wang, Weibin;
Yang, Ence;
Wang, Jiadong

Publication type:

Article

Gene expression responses of threespine stickleback to salinity: implications for salt-sensitive hypertension.

Published in:

Frontiers in Genetics, 2014, v. 5, p. 1, doi. 10.3389/fgene.2014.00312

By:

Gang Wang;
Ence Yang;
Smith, Kerri J.;
Yong Zeng;
Guoli Ji;
Connon, Richard;
Fangue, Nann A.;
Cai, James J.

Publication type:

Article

Exploiting aberrant mRNA expression in autism for gene discovery and diagnosis.

Published in:

Human Genetics, 2016, v. 135, n. 7, p. 797, doi. 10.1007/s00439-016-1673-7

By:

Guan, Jinting;
Yang, Ence;
Yang, Jizhou;
Zeng, Yong;
Ji, Guoli;
Cai, James

Publication type:

Article

Additive, Epistatic, and Environmental Effects Through the Lens of Expression Variability QTL in a Twin Cohort.

Published in:

Genetics, 2014, v. 196, n. 2, p. 413, doi. 10.1534/genetics.113.157503

By:

Gang Wang;
Ence Yang;
Brinkmeyer-Langford, Candice L.;
Cai, James J.

Publication type:

Article

Unraveling the dynamic transcriptomic changes during the dimorphic transition of Talaromyces marne.

Published in:

Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2024.136934

By:

Minghao Du;
Changyu Tao;
Xueyan Hu;
Yun Zhang;
Jun Kan;
Juan Wang;
Ence Yang

Publication type:

Article

Antimicrobial Compounds Produced by Vaginal Lactobacillus crispatus Are Able to Strongly Inhibit Candida albicans Growth, Hyphal Formation and Regulate Virulence-related Gene Expressions.

Published in:

Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00564

By:

Shuai Wang;
Qiangyi Wang;
Ence Yang;
Ling Yan;
Tong Li;
Hui Zhuang

Publication type:

Article

Th2 cells infiltrating high-grade serous ovarian cancer: a feature that may account for the poor prognosis.

Published in:

Journal of Gynecologic Oncology, 2023, v. 34, n. 4, p. 1, doi. 10.3802/jgo.2023.34.e48

By:

Hao Su;
Yueqi Jin;
Changyu Tao;
Hua Yang;
Ence Yang;
Wei-Guang Zhang;
Fengzhi Feng

Publication type:

Article

Genome-wide liver transcriptomic profiling of a malaria mouse model reveals disturbed immune and metabolic responses.

Published in:

Parasites & Vectors, 2023, v. 16, n. 1, p. 1, doi. 10.1186/s13071-023-05672-w

By:

Hu, Xueyan;
Zhao, Jie;
Zhao, Junhui;
Yang, Ence;
Jia, Mozhi

Publication type:

Article

Effect of storage conditions on the survival of two potential biocontrol agents of nematodes, the fungi Paecilomyces lilacinus and Pochonia chlamydosporia.

Published in:

Biocontrol Science & Technology, 2008, v. 18, n. 6, p. 613, doi. 10.1080/09583150802161868

By:

Weijun Duan;
Yang, Ence;
Meichun Xiang;
Xingzhong Liu

Publication type:

Article

MADS-Box Transcription Factor MadsA Regulates Dimorphic Transition, Conidiation, and Germination of Talaromyces marneffei.

Published in:

Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.01781

By:

Wang, Qiangyi;
Li, Tong;
Zhuang, Hui;
Du, Minghao;
Xiao, Liming;
Yang, Ence;
Wang, Shuai;
Wang, Linqi;
Liu, Linxia

Publication type:

Article

Competitive antagonism of KAT7 crotonylation against acetylation affects procentriole formation and colorectal tumorigenesis.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-57546-7

By:

Wang, Meng;
Mu, Guanqun;
Qiu, Bingquan;
Wang, Shuo;
Tao, Changyu;
Mao, Yutong;
Zhao, Xinhui;
Liu, Jiansong;
Chen, Keyu;
Li, Ziyu;
Wang, Weibin;
Yang, Ence;
Yang, Yang

Publication type:

Article

Functional response of the fungus Hirsutella rhossiliensis to the nematode, Heterodera glycines.

Published in:

SCIENCE CHINA Life Sciences, 2015, v. 58, n. 7, p. 704, doi. 10.1007/s11427-015-4868-6

By:

Shu, Chi;
Lai, YiLing;
Yang, EnCe;
Chen, SenYu;
Xiang, MeiChun;
Liu, XingZhong

Publication type:

Article

The landscape of hervRNAs transcribed from human endogenous retroviruses across human body sites.

Published in:

Genome Biology, 2022, v. 23, p. 1, doi. 10.1186/s13059-022-02804-w

By:

She, Jianqi;
Du, Minghao;
Xu, Zhanzhan;
Jin, Yueqi;
Li, Yu;
Zhang, Daoning;
Tao, Changyu;
Chen, Jian;
Wang, Jiadong;
Yang, Ence

Publication type:

Article

A unique cell wall synthetic response evoked by glucosamine determines pathogenicity-associated fungal cellular differentiation.

Published in:

PLoS Genetics, 2021, p. 1, doi. 10.1371/journal.pgen.1009817

By:

Hu, Pengjie;
Ding, Hao;
Shen, Lan;
He, Guang-Jun;
Liu, Huimin;
Tian, Xiuyun;
Tao, Changyu;
Bai, Xiangzheng;
Liang, Jingnan;
Jin, Cheng;
Xu, Xinping;
Yang, Ence;
Wang, Linqi

Publication type:

Article

Mapping and genotypic analysis of the NK-lysin gene in chicken.

Published in:

Genetics Selection Evolution, 2014, v. 46, p. 1, doi. 10.1186/1297-9686-46-43

By:

Mi Ok Lee;
Yang, Ence;
Morisson, Mireille;
Vignal, Alain;
Yong-Zhen Huang;
Cheng, Hans H.;
Muir, William M.;
Lamont, Susan J.;
Hyun Soon Lillehoj;
Sung Hyen Lee;
Womack, James E.

Publication type:

Article

Efficient and specific DNA oligonucleotide rRNA probe-based rRNA removal in Talaromyces marneffei.

Published in:

Mycology: An International Journal on Fungal Biology, 2022, v. 13, n. 2, p. 106, doi. 10.1080/21501203.2021.2017045

By:

Hu, Xueyan;
Zhang, Yun;
Du, Minghao;
Yang, Ence

Publication type:

Article

MTM: a multi-task learning framework to predict individualized tissue gene expression profiles.

Published in:

Bioinformatics, 2023, v. 39, n. 6, p. 1, doi. 10.1093/bioinformatics/btad363

By:

He, Guangyi;
Chen, Maiyue;
Bian, Yingnan;
Yang, Ence

Publication type:

Article

CVCDAP: an integrated platform for molecular and clinical analysis of cancer virtual cohorts.

Published in:

Nucleic Acids Research, 2020, v. 48, n. W1, p. W463, doi. 10.1093/nar/gkaa423

By:

Guan, Xiaoqing;
Cai, Meng;
Du, Yang;
Yang, Ence;
Ji, Jiafu;
Wu, Jianmin

Publication type:

Article

Population-level expression variability of mitochondrial DNA-encoded genes in humans.

Published in:

European Journal of Human Genetics, 2014, v. 22, n. 9, p. 1093, doi. 10.1038/ejhg.2013.293

By:

Wang, Gang;
Yang, Ence;
Mandhan, Ishita;
Brinkmeyer-Langford, Candice L;
Cai, James J

Publication type:

Article

Species-specific circular RNA circDS-1 enhances adaptive evolution in Talaromyces marneffei through regulation of dimorphic transition.

Published in:

PLoS Genetics, 2025, v. 21, n. 3, p. 1, doi. 10.1371/journal.pgen.1011482

By:

Hu, Xueyan;
Du, Minghao;
Tao, Changyu;
Wang, Juan;
Zhang, Yun;
Jin, Yueqi;
Yang, Ence

Publication type:

Article

Transcription factor Znf2 coordinates with the chromatin remodeling SWI/SNF complex to regulate cryptococcal cellular differentiation.

Published in:

Communications Biology, 2019, v. 2, n. 1, p. N.PAG, doi. 10.1038/s42003-019-0665-2

By:

Lin, Jianfeng;
Zhao, Youbao;
Ferraro, Aileen R.;
Yang, Ence;
Lewis, Zachary A.;
Lin, Xiaorong

Publication type:

Article

Epistasis and destabilizing mutations shape gene expression variability in humans via distinct modes of action.

Published in:

Human Molecular Genetics, 2016, v. 25, n. 22, p. 4911, doi. 10.1093/hmg/ddw314

By:

Ence Yang;
Gang Wang;
Jizhou Yang;
Beiyan Zhou;
Yanan Tian;
Cai, James J.

Publication type:

Article

Characterization of the Intestinal Fungal Microbiome in HIV and HCV Mono-Infected or Co-Infected Patients.

Published in:

Viruses (1999-4915), 2022, v. 14, n. 8, p. 1811, doi. 10.3390/v14081811

By:

Yin, Yue;
Tuohutaerbieke, Maermaer;
Feng, Chengjie;
Li, Xinjie;
Zhang, Yuqi;
Xu, Qiang;
Tu, Jing;
Yang, Ence;
Zou, Qinghua;
Shen, Tao

Publication type:

Article

The lncRNA RZE1 Controls Cryptococcal Morphological Transition.

Published in:

PLoS Genetics, 2015, v. 11, n. 11, p. 1, doi. 10.1371/journal.pgen.1005692

By:

Chacko, Nadia;
Zhao, Youbao;
Yang, Ence;
Wang, Linqi;
Cai, James J.;
Lin, Xiaorong

Publication type:

Article

Aberrant Gene Expression in Humans.

Published in:

PLoS Genetics, 2015, v. 11, n. 1, p. 1, doi. 10.1371/journal.pgen.1004942

By:

Zeng, Yong;
Wang, Gang;
Yang, Ence;
Ji, Guoli;
Brinkmeyer-Langford, Candice L.;
Cai, James J.

Publication type:

Article

Signature Gene Expression Reveals Novel Clues to the Molecular Mechanisms of Dimorphic Transition in Penicillium marneffei.

Published in:

PLoS Genetics, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pgen.1004662

By:

Yang, Ence;
Chow, Wang-Ngai;
Wang, Gang;
Woo, Patrick C. Y.;
Lau, Susanna K. P.;
Yuen, Kwok-Yung;
Lin, Xiaorong;
Cai, James J.

Publication type:

Article

Two Sequential Clinical Isolates of Candida glabrata with Multidrug-Resistance to Posaconazole and Echinocandins.

Published in:

Antibiotics (2079-6382), 2021, v. 10, n. 10, p. 1217, doi. 10.3390/antibiotics10101217

By:

Wang, Qiqi;
Li, Yun;
Cai, Xuan;
Li, Ruoyu;
Zheng, Bo;
Yang, Ence;
Liang, Tianyu;
Yang, Xinyu;
Wan, Zhe;
Liu, Wei

Publication type:

Article

Comparative Analysis of Clinical and Environmental Strains of Exophiala spinifera by Long-Reads Sequencing and RNAseq Reveal Adaptive Strategies.

Published in:

Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.01880

By:

Song, Yinggai;
Du, Minghao;
Menezes da Silva, Nickolas;
Yang, Ence;
Vicente, Vania A.;
Sybren de Hoog, G.;
Li, Ruoyu

Publication type:

Article

Regulatory basis for reproductive flexibility in a meningitis-causing fungal pathogen.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-35549-y

By:

Hu, Pengjie;
Ding, Hao;
Liu, Huimin;
Yang, Yulin;
Chen, Lei;
He, Guang-Jun;
Ke, Weixin;
Zhu, Ping;
Tian, Xiuyun;
Peng, Yan;
Shen, Zhenghao;
Yao, Xiaoxia;
Tao, Changyu;
Yang, Ence;
Liao, Guojian;
Liu, Xiao;
Wang, Linqi

Publication type:

Article

Detection of circular RNA expression and related quantitative trait loci in the human dorsolateral prefrontal cortex.

Published in:

Genome Biology, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s13059-019-1701-8

By:

Liu, Zelin;
Ran, Yuan;
Tao, Changyu;
Li, Sichen;
Chen, Jian;
Yang, Ence

Publication type:

Article