Works by Emberly, Eldon

Results: 32

BEAF Regulates Cell-Cycle Genes through the Controlled Deposition of H3K9 Methylation Marks into Its Conserved Dual-Core Binding Sites.

Published in:

PLoS Biology, 2008, v. 6, n. 12, p. e327, doi. 10.1371/journal.pbio.0060327

By:

Emberly, Eldon;
Blattes, Roxane;
Schuettengruber, Bernd;
Hennion, Magali;
Nan Jiang;
Hart, Craig M.;
Käs, Emmanuel;
Cuvier, Olivier

Publication type:

Article

Transcriptional Control in the Segmentation Gene Network of Drosophila.

Published in:

PLoS Biology, 2004, v. 2, n. 9, p. 1396, doi. 10.1371/journal.pbio.0020271

By:

Schroeder, Mark D.;
Pearce, Michael;
Fak, John;
Fan, Hongqing;
Unnerstall, Ulrich;
Emberly, Eldon;
Rajewsky, Nikolaus;
Siggia, Eric D.;
Gaul, Ulrike

Publication type:

Article

Transcriptional Control in the Segmentation Gene Network of Drosophila.

Published in:

PLoS Biology, 2004, v. 2, n. 8, p. 1, doi. 10.1371/journal.pbio.0020271

By:

Schroeder, Mark D;
Pearce, Michael;
Fak, John;
Fan, HongQing;
Unnerstall, Ulrich;
Emberly, Eldon;
Rajewsky, Nikolaus;
Siggia, Eric D;
Gaul, Ulrike

Publication type:

Article

Concordant and discordant DNA methylation signatures of aging in human blood and brain.

Published in:

Epigenetics & Chromatin, 2015, v. 8, n. 1, p. 1, doi. 10.1186/s13072-015-0011-y

By:

Farré, Pau;
Jones, Meaghan J.;
Meaney, Michael J.;
Emberly, Eldon;
Turecki, Gustavo;
Kobor, Michael S.

Publication type:

Article

Additional annotation enhances potential for biologically-relevant analysis of the Illumina Infinium Human Methylation 450 BeadChip array.

Published in:

Epigenetics & Chromatin, 2013, v. 6, n. 1, p. 1, doi. 10.1186/1756-8935-6-4

By:

Price, E. Magda;
Cotton, Allison M.;
Lam, Lucia L.;
Farré, Pau;
Emberly, Eldon;
Brown, Carolyn J.;
Robinson, Wendy P.;
Kobor, Michael S.

Publication type:

Article

Flexibility of β-sheets: Principal component analysis of database protein structures.

Published in:

Proteins, 2004, v. 55, n. 1, p. 91, doi. 10.1002/prot.10618

By:

Eldon G. Emberly;
Ranjan Mukhopadhyay;
Chao Tang;
Ned S. Wingreen

Publication type:

Article

Identifying proteins of high designability via surface-exposure patterns.

Published in:

Proteins, 2002, v. 47, n. 3, p. 295, doi. 10.1002/prot.10067

By:

Emberly, Eldon G.;
Miller, Jonathan;
Zeng, Chen;
Wingreen, Ned S.;
Tang, Chao

Publication type:

Article

Dense neural networks for predicting chromatin conformation.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2286-z

By:

Farré, Pau;
Heurteau, Alexandre;
Cuvier, Olivier;
Emberly, Eldon

Publication type:

Article

Extensive androgen receptor enhancer heterogeneity in primary prostate cancers underlies transcriptional diversity and metastatic potential.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-35135-2

By:

Kneppers, Jeroen;
Severson, Tesa M.;
Siefert, Joseph C.;
Schol, Pieter;
Joosten, Stacey E. P.;
Yu, Ivan Pak Lok;
Huang, Chia-Chi Flora;
Morova, Tunç;
Altıntaş, Umut Berkay;
Giambartolomei, Claudia;
Seo, Ji-Heui;
Baca, Sylvan C.;
Carneiro, Isa;
Emberly, Eldon;
Pasaniuc, Bogdan;
Jerónimo, Carmen;
Henrique, Rui;
Freedman, Matthew L.;
Wessels, Lodewyk F. A.;
Lack, Nathan A.

Publication type:

Article

Correlation between sequence hydrophobicity and surface-exposure pattern of database proteins.

Published in:

Protein Science: A Publication of the Protein Society, 2004, v. 13, n. 3, p. 752, doi. 10.1110/ps.03431704

By:

Moelbert, Susanne;
Emberly, Eldon;
Tang, Chao

Publication type:

Article

Insulators recruit histone methyltransferase d Mes4 to regulate chromatin of flanking genes.

Published in:

EMBO Journal, 2014, v. 33, n. 14, p. 1599, doi. 10.15252/embj.201385965

By:

Lhoumaud, Priscillia;
Hennion, Magali;
Gamot, Adrien;
Cuddapah, Suresh;
Queille, Sophie;
Liang, Jun;
Micas, Gael;
Morillon, Pauline;
Urbach, Serge;
Bouchez, Olivier;
Severac, Dany;
Emberly, Eldon;
Zhao, Keji;
Cuvier, Olivier

Publication type:

Article

CHROMATRA: a Galaxy tool for visualizing genome-wide chromatin signatures.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 717, doi. 10.1093/bioinformatics/bts007

By:

Hentrich, Thomas;
Schulze, Julia M.;
Emberly, Eldon;
Kobor, Michael S.

Publication type:

Article

Localization of aggregating proteins in bacteria depends on the rate of addition.

Published in:

Frontiers in Microbiology, 2014, v. 5, p. 1, doi. 10.3389/fmicb.2014.00418

By:

Scheu, Karlton;
Gill, Rakinder;
Saberi, Saeed;
Meyer, Pablo;
Emberly, Eldon

Publication type:

Article

Localization of aggregating proteins in bacteria depends on the rate of addition.

Published in:

Frontiers in Microbiology, 2014, v. 5, p. 1, doi. 10.3389/fmicb.2014.00418

By:

Scheu, Karl;
Gill, Ricky;
Saberi, Saeed;
Meyer, Pablo;
Emberly, Eldon

Publication type:

Article

Probing long-range interactions by extracting free energies from genome-wide chromosome conformation capture data.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0584-2

By:

Saberi, Saeed;
Farré, Pau;
Cuvier, Olivier;
Emberly, Eldon

Publication type:

Article

Genome-Wide Mapping of Boundary Element-Associated Factor (BEAF) Binding Sites in Drosophila melanogaster Links BEAF to Transcription.

Published in:

Molecular & Cellular Biology, 2009, v. 29, n. 13, p. 9, doi. 10.1128/MCB.01748-08

By:

Jiang, Nan;
Emberly, Eldon;
Cuvier, Olivier;
Hart, Craig M.

Publication type:

Article

Action and Outcome Activity State Patterns in the Anterior Cingulate Cortex.

Published in:

Cerebral Cortex, 2013, v. 23, n. 6, p. 1257, doi. 10.1093/cercor/bhs104

By:

Hyman, James M.;
Whitman, Jennifer;
Emberly, Eldon;
Woodward, Todd S.;
Seamans, Jeremy K.

Publication type:

Article

DNA segregation under Par protein control.

Published in:

PLoS ONE, 2019, v. 14, n. 7, p. 1, doi. 10.1371/journal.pone.0218520

By:

Jindal, Lavisha;
Emberly, Eldon

Publication type:

Article

Abrupt changes in the patterns and complexity of anterior cingulate cortex activity when food is introduced into an environment.

Published in:

Frontiers in Neuroscience, 2013, v. 7, p. 1, doi. 10.3389/fnins.2013.00074

By:

Caracheo, Barak F.;
Emberly, Eldon;
Hadizadeh, Shirin;
Hyman, James M.;
Seamans, Jeremy K.

Publication type:

Article

Conservation of regulatory elements between two species of Drosophila.

Published in:

BMC Bioinformatics, 2003, v. 4, p. 57, doi. 10.1186/1471-2105-4-57

By:

Emberly, Eldon;
Rajewsky, Nikolaus;
Siggia, Eric D.

Publication type:

Article

Operational Principles for the Dynamics of the In Vitro ParA-ParB System.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004651

By:

Jindal, Lavisha;
Emberly, Eldon

Publication type:

Article

Chromosome Driven Spatial Patterning of Proteins in Bacteria.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 11, p. 1, doi. 10.1371/journal.pcbi.1000986

By:

Saberi, Saeed;
Emberly, Eldon

Publication type:

Article

Charging Effects, Forces, and Conduction in Molecular Wire Systems.

Published in:

Annals of the New York Academy of Sciences, 2002, v. 960, n. 1, p. 131, doi. 10.1111/j.1749-6632.2002.tb03028.x

By:

EMBERLY, ELDON G.;
KIRCZENOW, GEORGE

Publication type:

Article

A maximum-entropy model for predicting chromatin contacts.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.pcbi.1005956

By:

Farré, Pau;
Emberly, Eldon

Publication type:

Article

A Model for Cell Population Size Control Using Asymmetric Division.

Published in:

PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0074324

By:

Hamidi, Mani;
Emberly, Eldon

Publication type:

Article

Non-Equilibrium Polar Localization of Proteins in Bacterial Cells

Published in:

PLoS ONE, 2013, v. 8, n. 5, p. 1, doi. 10.1371/journal.pone.0064075

By:

Saberi, Saeed;
Emberly, Eldon

Publication type:

Article

Vital Dye Reaction and Granule Localization in Periplasm of Escherichia coli.

Published in:

PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0038427

By:

Liyan Ping;
Mavridou, Despoina A. I.;
Ferguson, Stuart J.;
Emberly, Eldon;
Westermann, Martin

Publication type:

Article

Children's biobehavioral reactivity to challenge predicts DNA methylation in adolescence and emerging adulthood.

Published in:

Developmental Science, 2019, v. 22, n. 2, p. N.PAG, doi. 10.1111/desc.12739

By:

Goodman, Sarah J.;
Kobor, Michael S.;
Park, Mina;
Roubinov, Danielle S.;
Bush, Nicole R.;
Boyce, W. Thomas;
Hertzman, Clyde;
Farré, Pau;
Emberly, Eldon;
Essex, Marilyn J.

Publication type:

Article

Theory of Electrical Conduction Through a Molecule.

Published in:

Annals of the New York Academy of Sciences, 1998, v. 852, n. 1, p. 54, doi. 10.1111/j.1749-6632.1998.tb09864.x

By:

EMBERLY, ELDON G.;
KIRCZENOW, GEORGE

Publication type:

Article

Optimizing Efficiency and Motility of a Polyvalent Molecular Motor.

Published in:

Micromachines, 2022, v. 13, n. 6, p. 914, doi. 10.3390/mi13060914

By:

Rempel, Mark;
Emberly, Eldon

Publication type:

Article

Abrupt, Asynchronous Changes in Action Representations by Anterior Cingulate Cortex Neurons during Trial and Error Learning.

Published in:

Cerebral Cortex, 2020, v. 30, n. 8, p. 4336, doi. 10.1093/cercor/bhaa019

By:

Emberly, Eldon;
Seamans, Jeremy K

Publication type:

Article

Distinct DNA methylation patterns of cognitive impairment and trisomy 21 in down syndrome.

Published in:

BMC Medical Genomics, 2013, v. 6, n. 1, p. 1, doi. 10.1186/1755-8794-6-58

By:

Jones, Meaghan J.;
Farré, Pau;
McEwen, Lisa M.;
MacIsaac, Julia L.;
Watt, Kim;
Neumann, Sarah M.;
Emberly, Eldon;
Cynader, Max S.;
Virji-Babul, Naznin;
Kobo, Michael S.

Publication type:

Article