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Identification of large offspring syndrome during pregnancy through ultrasonography and maternal blood transcriptome analyses.
Published in:
Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-14597-w
By:
- Rivera, Rocío Melissa;
- Goldkamp, Anna Katherine;
- Patel, Bhaumik Narendrabhai;
- Hagen, Darren Erich;
- Soto-Moreno, Edgar Joel;
- Li, Yahan;
- Kim, Chris Nayoon;
- Miller, Cliff;
- Williams III, Fred;
- Jannaman, Elizabeth;
- Xiao, Yao;
- Tribulo, Paula;
- Estrada-Cortés, Eliab;
- Brau-Rodríguez, Astrid Roshealy;
- Hansen, Peter James;
- Wu, Zhoulin;
- Spinka, Christine Marie;
- Martin, Neal;
- Elsik, Christine G.
Publication type:
Article
A chromosome-level assembly of the cat flea genome uncovers rampant gene duplication and genome size plasticity.
Published in:
BMC Biology, 2020, v. 18, n. 1, p. 1, doi. 10.1186/s12915-020-00802-7
By:
- Driscoll, Timothy P.;
- Verhoeve, Victoria I.;
- Gillespie, Joseph J.;
- Johnston, J. Spencer;
- Guillotte, Mark L.;
- Rennoll-Bankert, Kristen E.;
- Rahman, M. Sayeedur;
- Hagen, Darren;
- Elsik, Christine G.;
- Macaluso, Kevin R.;
- Azad, Abdu F.
Publication type:
Article
Microsatellite analysis of Pinus taeda L. in Zimbabwe.
Published in:
Heredity, 2000, v. 84, n. 2, p. 261, doi. 10.1046/j.1365-2540.2000.00666.x
By:
- Williams, Claire G.;
- Elsik, Christine G.;
- Barnes, Richard D.
Publication type:
Article
MaizeGDB 2018: the maize multi-genome genetics and genomics database.
Published in:
Nucleic Acids Research, 2019, v. 47, n. D1, p. D1146, doi. 10.1093/nar/gky1046
By:
- Portwood, John L;
- Woodhouse, Margaret R;
- Cannon, Ethalinda K;
- Gardiner, Jack M;
- Harper, Lisa C;
- Schaeffer, Mary L;
- Walsh, Jesse R;
- Sen, Taner Z;
- Cho, Kyoung Tak;
- Schott, David A;
- Braun, Bremen L;
- Dietze, Miranda;
- Dunfee, Brittney;
- Elsik, Christine G;
- Manchanda, Nancy;
- Coe, Ed;
- Sachs, Marty;
- Stinard, Philip;
- Tolbert, Josh;
- Zimmerman, Shane
Publication type:
Article
Bovine Genome Database: new tools for gleaning function from the Bos taurus genome.
Published in:
Nucleic Acids Research, 2016, v. 44, p. D834, doi. 10.1093/nar/gkv1077
By:
- Elsik, Christine G.;
- Unni, Deepak R.;
- Diesh, Colin M.;
- Tayal, Aditi;
- Emery, Marianne L.;
- Nguyen, Hung N.;
- Hagen, Darren E.
Publication type:
Article
Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine.
Published in:
Nucleic Acids Research, 2016, v. 44, n. 1, p. D793, doi. 10.1093/nar/gkv1208
By:
- Elsik, Christine G.;
- Tayal, Aditi;
- Diesh, Colin M.;
- Unni, Deepak R.;
- Emery, Marianne L.;
- Nguyen, Hung N.;
- Hagen, Darren E.
Publication type:
Article
Bovine Genome Database: integrated tools for genome annotation and discovery.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D830, doi. 10.1093/nar/gkq1235
By:
- Childers, Christopher P.;
- Reese, Justin T.;
- Sundaram, Jaideep P.;
- Vile, Donald C.;
- Dickens, C. Michael;
- Childs, Kevin L.;
- Salih, Hanni;
- Bennett, Anna K.;
- Hagen, Darren E.;
- Adelson, David L.;
- Elsik, Christine G.
Publication type:
Article
Hymenoptera Genome Database: integrated community resources for insect species of the order Hymenoptera.
Published in:
Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D658, doi. 10.1093/nar/gkq1145
By:
- Munoz-Torres, Monica C.;
- Reese, Justin T.;
- Childers, Christopher P.;
- Bennett, Anna K.;
- Sundaram, Jaideep P.;
- Childs, Kevin L.;
- Anzola, Juan M.;
- Milshina, Natalia;
- Elsik, Christine G.
Publication type:
Article
Multi-tiered analyses of honey bees that resist or succumb to parasitic mites and viruses.
Published in:
BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-08032-z
By:
- Weaver, Daniel B.;
- Cantarel, Brandi L.;
- Elsik, Christine G.;
- Boncristiani, Dawn L.;
- Evans, Jay D.
Publication type:
Article
De novo assembly of the cattle reference genome with single-molecule sequencing.
Published in:
GigaScience, 2020, v. 9, n. 3, p. N.PAG, doi. 10.1093/gigascience/giaa021
By:
- Rosen, Benjamin D;
- Bickhart, Derek M;
- Schnabel, Robert D;
- Koren, Sergey;
- Elsik, Christine G;
- Tseng, Elizabeth;
- Rowan, Troy N;
- Low, Wai Y;
- Zimin, Aleksey;
- Couldrey, Christine;
- Hall, Richard;
- Li, Wenli;
- Rhie, Arang;
- Ghurye, Jay;
- McKay, Stephanie D;
- Thibaud-Nissen, Françoise;
- Hoffman, Jinna;
- Murdoch, Brenda M;
- Snelling, Warren M;
- McDaneld, Tara G
Publication type:
Article
Nuclear translocation of vitellogenin in the honey bee (Apis mellifera)
Published in:
Apidologie, 2022, v. 53, n. 1, p. 1, doi. 10.1007/s13592-022-00914-9
By:
- Salmela, Heli;
- Harwood, Gyan P.;
- Münch, Daniel;
- Elsik, Christine G.;
- Herrero-Galán, Elías;
- Vartiainen, Maria K.;
- Amdam, Gro V.
Publication type:
Article
MaizeMine: A Data Mining Warehouse for the Maize Genetics and Genomics Database.
Published in:
Frontiers in Plant Science, 2020, v. 11, p. N.PAG, doi. 10.3389/fpls.2020.592730
By:
- Shamimuzzaman, Md;
- Gardiner, Jack M.;
- Walsh, Amy T.;
- Triant, Deborah A.;
- Le Tourneau, Justin J.;
- Tayal, Aditi;
- Unni, Deepak R.;
- Nguyen, Hung N.;
- Portwood II, John L.;
- Cannon, Ethalinda K. S.;
- Andorf, Carson M.;
- Elsik, Christine G.
Publication type:
Article
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay088
By:
- Harper, Lisa;
- Campbell, Jacqueline;
- Cannon, Ethalinda K S;
- Jung, Sook;
- Poelchau, Monica;
- Walls, Ramona;
- Andorf, Carson;
- Arnaud, Elizabeth;
- Berardini, Tanya Z;
- Birkett, Clayton;
- Cannon, Steve;
- Carson, James;
- Condon, Bradford;
- Cooper, Laurel;
- Dunn, Nathan;
- Elsik, Christine G;
- Farmer, Andrew;
- Ficklin, Stephen P;
- Grant, David;
- Grau, Emily
Publication type:
Article
Unlocking the bovine genome.
Published in:
BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-193
By:
- Tellam, Ross L.;
- Lemay, Danielle G.;
- Van Tassell, Curtis P.;
- Lewin, Harris A.;
- Worley, Kim C.;
- Elsik, Christine G.
Publication type:
Article
Insights into social insects from the genome of the honeybee Apis mellifera.
Published in:
Nature, 2006, v. 443, n. 7114, p. 931, doi. 10.1038/nature05260
By:
- The Honeybee Genome Sequencing Consortium;
- Weinstock, George M.;
- Robinson, Gene E.;
- Gibbs, Richard A.;
- Worley, Kim C.;
- Evans, Jay D.;
- Maleszka, Ryszard;
- Robertson, Hugh M.;
- Weaver, Daniel B.;
- Beye, Martin;
- Bork, Peer;
- Elsik, Christine G.;
- Hartfelder, Klaus;
- Hunt, Greg J.;
- Zdobnov, Evgeny M.;
- Amdam, Gro V.;
- Bitondi, Mrcia M. G.;
- Collins, Anita M.;
- Cristino, Alexandre S.;
- Michael, H.
Publication type:
Article
JBrowse: a dynamic web platform for genome visualization and analysis.
Published in:
Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-0924-1
By:
- Buels, Robert;
- Yao, Eric;
- Diesh, Colin M.;
- Hayes, Richard D.;
- Munoz-Torres, Monica;
- Helt, Gregg;
- Goodstein, David M.;
- Elsik, Christine G.;
- Lewis, Suzanna E.;
- Stein, Lincoln;
- Holmes, Ian H.
Publication type:
Article
Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project.
Published in:
Genome Biology, 2015, v. 16, n. 1, p. 57, doi. 10.1186/s13059-015-0622-4
By:
- Andersson, Leif;
- Archibald, Alan L;
- Bottema, Cynthia D;
- Brauning, Rudiger;
- Burgess, Shane C;
- Burt, Dave W;
- Casas, Eduardo;
- Cheng, Hans H;
- Clarke, Laura;
- Couldrey, Christine;
- Dalrymple, Brian P;
- Elsik, Christine G;
- Foissac, Sylvain;
- Giuffra, Elisabetta;
- Groenen, Martien A;
- Hayes, Ben J;
- Huang, LuSheng S;
- Khatib, Hassan;
- Kijas, James W;
- Heebal Kim
Publication type:
Article
The genomes of two key bumblebee species with primitive eusocial organization.
Published in:
Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/S13059-015-0623-3
By:
- Sadd, Ben M.;
- Barribeau, Seth M.;
- Bloch, Guy;
- de Graaf, Dirk C.;
- Dearden, Peter;
- Elsik, Christine G.;
- Gadau, Jürgen;
- Grimmelikhuijzen, Cornelis J. P.;
- Hasselmann, Martin;
- Lozier, Jeffrey D.;
- Robertson, Hugh M.;
- Smagghe, Guy;
- Stolle, Eckart;
- Van Vaerenbergh, Matthias;
- Waterhouse, Robert M.;
- Bornberg-Bauer, Erich;
- Klasberg, Steffen;
- Bennett, Anna K.;
- Câmara, Francisco;
- Guigó, Roderic
Publication type:
Article
Web Apollo: a web-based genomic annotation editing platform.
Published in:
Genome Biology, 2013, v. 14, n. 8, p. R93, doi. 10.1186/gb-2013-14-8-r93
By:
- Eduardo Lee;
- Helt, Gregg A;
- Reese, Justin T;
- Munoz-Torres, Monica C;
- Childers, Chris P;
- Buels, Robert M;
- Stein, Lincoln;
- Holmes, Ian H;
- Elsik, Christine G;
- Lewis, Suzanna E
Publication type:
Article
AgAnimalGenomes: browsers for viewing and manually annotating farm animal genomes.
Published in:
Mammalian Genome, 2023, v. 34, n. 3, p. 418, doi. 10.1007/s00335-023-10008-1
By:
- Triant, Deborah A.;
- Walsh, Amy T.;
- Hartley, Gabrielle A.;
- Petry, Bruna;
- Stegemiller, Morgan R.;
- Nelson, Benjamin M.;
- McKendrick, Makenna M.;
- Fuller, Emily P.;
- Cockett, Noelle E.;
- Koltes, James E.;
- McKay, Stephanie D.;
- Green, Jonathan A.;
- Murdoch, Brenda M.;
- Hagen, Darren E.;
- Elsik, Christine G.
Publication type:
Article
Prediction of protein interdomain linker regions by a hidden Markov model.
Published in:
Bioinformatics, 2005, v. 21, n. 10, p. 2264, doi. 10.1093/bioinformatics/bti363
By:
- Kyounghwa Bae;
- Bani K. Mallick;
- Christine G. Elsik
Publication type:
Article
Hymenoptera Genome Database: new genomes and annotation datasets for improved go enrichment and orthologue analyses.
Published in:
Nucleic Acids Research, 2022, v. 50, n. D1, p. D1032, doi. 10.1093/nar/gkab1018
By:
- Walsh, Amy T;
- Triant, Deborah A;
- Le Tourneau, Justin J;
- Shamimuzzaman, Md;
- Elsik, Christine G
Publication type:
Article
Bovine Genome Database: new annotation tools for a new reference genome.
Published in:
Nucleic Acids Research, 2020, v. 48, n. D1, p. D676, doi. 10.1093/nar/gkz944
By:
- Shamimuzzaman, Md;
- Le Tourneau, Justin J;
- Unni, Deepak R;
- Diesh, Colin M;
- Triant, Deborah A;
- Walsh, Amy T;
- Tayal, Aditi;
- Conant, Gavin C;
- Hagen, Darren E;
- Elsik, Christine G
Publication type:
Article
Toward a data infrastructure for the Plant Cell Atlas.
Published in:
Plant Physiology, 2023, v. 191, n. 1, p. 35, doi. 10.1093/plphys/kiac468
By:
- Fahlgren, Noah;
- Kapoor, Muskan;
- Yordanova, Galabina;
- Papatheodorou, Irene;
- Waese, Jamie;
- Cole, Benjamin;
- Harrison, Peter;
- Ware, Doreen;
- Tickle, Timothy;
- Paten, Benedict;
- Burdett, Tony;
- Elsik, Christine G.;
- Tuggle, Christopher K.;
- Provart, Nicholas J.
Publication type:
Article
Differential gene expression in response to eCry3.1Ab ingestion in an unselected and eCry3.1Ab-selected western corn rootworm (Diabrotica virgifera virgifera LeConte) population.
Published in:
Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-41067-7
By:
- Zhao, Zixiao;
- Meihls, Lisa N.;
- Hibbard, Bruce E.;
- Ji, Tieming;
- Elsik, Christine G.;
- Shelby, Kent S.
Publication type:
Article
Manual superscaffolding of honey bee ( Apis mellifera) chromosomes 12–16: implications for the draft genome assembly version 4, gene annotation, and chromosome structure.
Published in:
Insect Molecular Biology, 2007, v. 16, n. 4, p. 401, doi. 10.1111/j.1365-2583.2007.00738.x
By:
- Robertson, Hugh M.;
- Reese, Justin T.;
- Milshina, Natalia V.;
- Agarwala, Richa;
- Solignac, Michel;
- Walden, Kimberly K. O.;
- Elsik, Christine G.
Publication type:
Article
Identification of REST targets in the Xenopus tropicalis genome.
Published in:
BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1591-4
By:
- Saritas-Yildirim, Banu;
- Childers, Christopher P.;
- Elsik, Christine G.;
- Silva, Elena M.
Publication type:
Article
Finding the missing honey bee genes: lessons learned from a genome upgrade.
Published in:
BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-86
By:
- Elsik, Christine G.;
- Worley, Kim C.;
- Bennett, Anna K.;
- Beye, Martin;
- Camara, Francisco;
- Childers, Christopher P.;
- de Graaf, Dirk C.;
- Debyser, Griet;
- Jixin Deng;
- Devreese, Bart;
- Elhaik, Eran;
- Evans, Jay D.;
- Foster, Leonard J.;
- Graur, Dan;
- Guigo, Roderic;
- Hoff, Katharina Jasmin;
- Holder, Michael E.;
- Hudson, Matthew E.;
- Hunt, Greg J.;
- Huaiyang Jiang
Publication type:
Article
Transcriptome analysis of the honey bee fungal pathogen, Ascosphaera apis: implications for host pathogenesis.
Published in:
BMC Genomics, 2012, v. 13, n. 1, p. 285, doi. 10.1186/1471-2164-13-285
By:
- Cornman, R. Scott;
- Bennett, Anna K.;
- Murray, K. Daniel;
- Evans, Jay D.;
- Elsik, Christine G.;
- Aronstein, Kate
Publication type:
Article
Bovine Genome Database: supporting community annotation and analysis of the Bos taurus genome.
Published in:
BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-645
By:
- Reese, Justin T;
- Childers, Christopher P;
- Sundaram, Jaideep P;
- Dickens, C Michael;
- Childs, Kevin L;
- Vile, Donald C;
- Elsik, Christine G
Publication type:
Article
Bovine Genome Database: supporting community annotation and analysis of the Bos taurus genome.
Published in:
BMC Genomics, 2010, v. 11, p. 645, doi. 10.1186/1471-2164-11-645
By:
- Reese, Justin T.;
- Childers, Christopher P.;
- Sundaram, Jaideep P.;
- Dickens, C. Michael;
- Childs, Kevin L.;
- Vile, Donald C.;
- Elsik, Christine G.
Publication type:
Article
Apollo: Democratizing genome annotation.
Published in:
PLoS Computational Biology, 2019, v. 15, n. 2, p. 1, doi. 10.1371/journal.pcbi.1006790
By:
- Dunn, Nathan A.;
- Unni, Deepak R.;
- Diesh, Colin;
- Munoz-Torres, Monica;
- Harris, Nomi L.;
- Yao, Eric;
- Rasche, Helena;
- Holmes, Ian H.;
- Elsik, Christine G.;
- Lewis, Suzanna E.
Publication type:
Article
Transcriptome sequencing as a platform to elucidate molecular components of the diapause response in the Asian tiger mosquito Aedes albopictus.
Published in:
Physiological Entomology, 2013, v. 38, n. 2, p. 173, doi. 10.1111/phen.12016
By:
- POELCHAU, MONICA F.;
- REYNOLDS, JULIE A.;
- DENLINGER, DAVID L.;
- ELSIK, CHRISTINE G.;
- ARMBRUSTER, PETER A.
Publication type:
Article
Development and Application of Bovine and Porcine Oligonucleotide Arrays with Protein-Based Annotation.
Published in:
Journal of Biomedicine & Biotechnology, 2010, p. 1, doi. 10.1155/2010/453638
By:
- Garbe, John R.;
- Elsik, Christine G.;
- Antoniou, Eric;
- Reecy, James M.;
- Clark, Karl J.;
- Venkatraman, Anand;
- Jae-Woo Kim;
- Schnabel, Robert D.;
- Dickens, C. Michael;
- Wolfinger, Russell D.;
- Fahrenkrug, Scott C.;
- Taylor, Jeremy F.
Publication type:
Article

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