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The Plant Ontology Facilitates Comparisons of Plant Development Stages Across Species.
Published in:
Frontiers in Plant Science, 2019, p. N.PAG, doi. 10.3389/fpls.2019.00631
By:
- Walls, Ramona L.;
- Cooper, Laurel;
- Elser, Justin;
- Gandolfo, Maria Alejandra;
- Mungall, Christopher J.;
- Smith, Barry;
- Stevenson, Dennis W.;
- Jaiswal, Pankaj
Publication type:
Article
The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.
Published in:
Nucleic Acids Research, 2018, v. 46, n. D1, p. D1168, doi. 10.1093/nar/gkx1152
By:
- Cooper, Laurel;
- Meier, Austin;
- Laporte, Marie-Angélique;
- Elser, Justin L;
- Mungall, Chris;
- Sinn, Brandon T;
- Cavaliere, Dario;
- Carbon, Seth;
- Dunn, Nathan A;
- Smith, Barry
Publication type:
Article
Plant Reactome: a resource for plant pathways and comparative analysis.
Published in:
Nucleic Acids Research, 2017, v. 45, n. D1, p. D1029, doi. 10.1093/nar/gkw932
By:
- Naithani, Sushma;
- Preece, Justin;
- D'Eustachio, Peter;
- Gupta, Parul;
- Amarasinghe, Vindhya;
- Dharmawardhana, Palitha D.;
- Guanming Wu;
- Fabregat, Antonio;
- Elser, Justin L.;
- Weiser, Joel;
- Keays, Maria;
- Fuentes, Alfonso Munoz-Pomer;
- Petryszak, Robert;
- Stein, Lincoln D.;
- Ware, Doreen;
- Jaiswal, Pankaj
Publication type:
Article
Gramene 2016: comparative plant genomics and pathway resources.
Published in:
Nucleic Acids Research, 2016, v. 44, n. 1, p. D1133, doi. 10.1093/nar/gkv1179
By:
- Tello-Ruiz, Marcela K.;
- Stein, Joshua;
- Wei, Sharon;
- Preece, Justin;
- Olson, Andrew;
- Naithani, Sushma;
- Amarasinghe, Vindhya;
- Dharmawardhana, Palitha;
- Jiao, Yinping;
- Mulvaney, Joseph;
- Kumari, Sunita;
- Chougule, Kapeel;
- Elser, Justin;
- Wang, Bo;
- Thomason, James;
- Bolser, Daniel M.;
- Kerhornou, Arnaud;
- Walts, Brandon;
- Fonseca, Nuno A.;
- Huerta, Laura
Publication type:
Article
A draft phased assembly of the diploid Cascade hop (Humulus lupulus) genome.
Published in:
Plant Genome, 2021, v. 14, n. 1, p. 1, doi. 10.1002/tpg2.20072
By:
- Padgitt‐Cobb, Lillian K.;
- Kingan, Sarah B.;
- Wells, Jackson;
- Elser, Justin;
- Kronmiller, Brent;
- Moore, Daniel;
- Concepcion, Gregory;
- Peluso, Paul;
- Rank, David;
- Jaiswal, Pankaj;
- Henning, John;
- Hendrix, David A.
Publication type:
Article
De Novo Transcriptome Assembly and Analyses of Gene Expression during Photomorphogenesis in Diploid Wheat Triticum monococcum.
Published in:
PLoS ONE, 2014, v. 9, n. 5, p. 1, doi. 10.1371/journal.pone.0096855
By:
- Fox, Samuel E.;
- Geniza, Matthew;
- Hanumappa, Mamatha;
- Naithani, Sushma;
- Sullivan, Chris;
- Preece, Justin;
- Tiwari, Vijay K.;
- Elser, Justin;
- Leonard, Jeffrey M.;
- Sage, Abigail;
- Gresham, Cathy;
- Kerhornou, Arnaud;
- Bolser, Dan;
- McCarthy, Fiona;
- Kersey, Paul;
- Lazo, Gerard R.;
- Jaiswal, Pankaj
Publication type:
Article
Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides.
Published in:
G3: Genes | Genomes | Genetics, 2016, v. 6, n. 3, p. 731, doi. 10.1534/g3.116.027045
By:
- Alisha Quandt, C.;
- Yanming Di;
- Elser, Justin;
- Jaiswal, Pankaj;
- Spatafora, Joseph W.
Publication type:
Article
Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides.
Published in:
G3: Genes | Genomes | Genetics, 2016, v. 6, n. 1, p. 731, doi. 10.1534/g3.116.027045
By:
- Quandt, C. Alisha;
- Yanming Di;
- Elser, Justin;
- Jaiswal, Pankaj;
- Spatafora, Joseph W.
Publication type:
Article
ONTOLOGIES AS INTEGRATIVE TOOLS FOR PLANT SCIENCE.
Published in:
American Journal of Botany, 2012, v. 99, n. 8, p. 1263, doi. 10.3732/ajb.1200222
By:
- Walls, Ramona L.;
- Athreya, Balaji;
- Cooper, Laurel;
- Elser, Justin;
- Gandolfo, Maria A.;
- Jaiswal, Pankaj;
- Mungall, Christopher J.;
- Preece, Justin;
- Rensing, Stefan;
- Smith, Barry;
- Stevenson, Dennis W.
Publication type:
Article
The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses.
Published in:
Plant & Cell Physiology, 2013, v. 54, n. 2, p. e1, doi. 10.1093/pcp/pcs163
By:
- Cooper, Laurel;
- Walls, Ramona L.;
- Elser, Justin;
- Gandolfo, Maria A.;
- Stevenson, Dennis W.;
- Smith, Barry;
- Preece, Justin;
- Athreya, Balaji;
- Mungall, Christopher J.;
- Rensing, Stefan;
- Hiss, Manuel;
- Lang, Daniel;
- Reski, Ralf;
- Berardini, Tanya Z.;
- Li, Donghui;
- Huala, Eva;
- Schaeffer, Mary;
- Menda, Naama;
- Arnaud, Elizabeth;
- Shrestha, Rosemary
Publication type:
Article
Reference genome of the nutrition-rich orphan crop chia (Salvia hispanica) and its implications for future breeding.
Published in:
Frontiers in Plant Science, 2023, p. 1, doi. 10.3389/fpls.2023.1272966
By:
- Gupta, Parul;
- Geniza, Matthew;
- Elser, Justin;
- Al-Bader, Noor;
- Baschieri, Rachel;
- Phillips, Jeremy Levi;
- Haq, Ebaad;
- Preece, Justin;
- Naithani, Sushma;
- Jaiswal, Pankaj
Publication type:
Article
Plant Reactome Knowledgebase: empowering plant pathway exploration and OMICS data analysis.
Published in:
Nucleic Acids Research, 2024, v. 52, n. D1, p. D1538, doi. 10.1093/nar/gkad1052
By:
- Gupta, Parul;
- Elser, Justin;
- Hooks, Elizabeth;
- D'Eustachio, Peter;
- Jaiswal, Pankaj;
- Naithani, Sushma
Publication type:
Article
Planteome 2024 Update: Reference Ontologies and Knowledgebase for Plant Biology.
Published in:
Nucleic Acids Research, 2024, v. 52, n. D1, p. D1548, doi. 10.1093/nar/gkad1028
By:
- Cooper, Laurel;
- Elser, Justin;
- Laporte, Marie-Angelique;
- Arnaud, Elizabeth;
- Jaiswal, Pankaj
Publication type:
Article
Ensembl Genomes 2022: an expanding genome resource for non-vertebrates.
Published in:
Nucleic Acids Research, 2022, v. 50, n. D1, p. D996, doi. 10.1093/nar/gkab1007
By:
- Yates, Andrew D;
- Allen, James;
- Amode, Ridwan M;
- Azov, Andrey G;
- Barba, Matthieu;
- Becerra, Andrés;
- Bhai, Jyothish;
- Campbell, Lahcen I;
- Carbajo Martinez, Manuel;
- Chakiachvili, Marc;
- Chougule, Kapeel;
- Christensen, Mikkel;
- Contreras-Moreira, Bruno;
- Cuzick, Alayne;
- Da Rin Fioretto, Luca;
- Davis, Paul;
- De Silva, Nishadi H;
- Diamantakis, Stavros;
- Dyer, Sarah;
- Elser, Justin
Publication type:
Article
Plant Reactome: a knowledgebase and resource for comparative pathway analysis.
Published in:
Nucleic Acids Research, 2020, v. 48, n. D1, p. D1093, doi. 10.1093/nar/gkz996
By:
- Naithani, Sushma;
- Gupta, Parul;
- Preece, Justin;
- D'Eustachio, Peter;
- Elser, Justin L;
- Garg, Priyanka;
- Dikeman, Daemon A;
- Kiff, Jason;
- Cook, Justin;
- Olson, Andrew;
- Wei, Sharon;
- Tello-Ruiz, Marcela K;
- Mundo, Antonio Fabregat;
- Munoz-Pomer, Alfonso;
- Mohammed, Suhaib;
- Cheng, Tiejun;
- Bolton, Evan;
- Papatheodorou, Irene;
- Stein, Lincoln;
- Ware, Doreen
Publication type:
Article
Plasmonic Nanolayer Composites: Coupled Plasmon Polaritons, Effective-Medium Response, and Subdiffraction Light Manipulation.
Published in:
Journal of Nanomaterials, 2007, p. 1, doi. 10.1155/2007/79469
By:
- Elser, Justin;
- Govyadinov, Alexander A.;
- Avrutsky, Ivan;
- Salakhutdinov, Ildar;
- Podolskiy, Viktor A.
Publication type:
Article
The Genome of Tolypocladium inflatum: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster.
Published in:
PLoS Genetics, 2013, v. 9, n. 6, p. 1, doi. 10.1371/journal.pgen.1003496
By:
- Bushley, Kathryn E.;
- Raja, Rajani;
- Jaiswal, Pankaj;
- Cumbie, Jason S.;
- Nonogaki, Mariko;
- Boyd, Alexander E.;
- Owensby, C. Alisha;
- Knaus, Brian J.;
- Elser, Justin;
- Miller, Daniel;
- Di, Yanming;
- McPhail, Kerry L.;
- Spatafora, Joseph W.
Publication type:
Article
Biocuration of a Transcription Factors Network Involved in Submergence Tolerance during Seed Germination and Coleoptile Elongation in Rice (Oryza sativa).
Published in:
Plants (2223-7747), 2023, v. 12, n. 11, p. 2146, doi. 10.3390/plants12112146
By:
- Naithani, Sushma;
- Mohanty, Bijayalaxmi;
- Elser, Justin;
- D'Eustachio, Peter;
- Jaiswal, Pankaj
Publication type:
Article
FragariaCyc: A Metabolic Pathway Database for Woodland Strawberry Fragaria vesca.
Published in:
Frontiers in Plant Science, 2016, p. 1, doi. 10.3389/fpls.2016.00242
By:
- Naithani, Sushma;
- Partipilo, Christina M.;
- Raja, Rajani;
- Elser, Justin L.;
- Jaiswal, Pankaj;
- May, Patrick;
- Amaya, Iraida
Publication type:
Article
VitisCyc: a metabolic pathway knowledgebase for grapevine (Vitis vinifera).
Published in:
Frontiers in Plant Science, 2014, v. 5, p. 1, doi. 10.3389/fpls.2014.00644
By:
- Naithani, Sushma;
- Raja, Rajani;
- Waddell, Elijah N.;
- Elser, Justin;
- Jaiswal, Pankaj;
- Gouthu, Satyanarayana;
- Deluc, Laurent G.
Publication type:
Article

Found: 20

The Plant Ontology Facilitates Comparisons of Plant Development Stages Across Species.

The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics.

Plant Reactome: a resource for plant pathways and comparative analysis.

Gramene 2016: comparative plant genomics and pathway resources.

A draft phased assembly of the diploid Cascade hop (Humulus lupulus) genome.

<i>De Novo</i> Transcriptome Assembly and Analyses of Gene Expression during Photomorphogenesis in Diploid Wheat <i>Triticum monococcum</i>.

Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides.

Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides.

ONTOLOGIES AS INTEGRATIVE TOOLS FOR PLANT SCIENCE.

The Plant Ontology as a Tool for Comparative Plant Anatomy and Genomic Analyses.

Reference genome of the nutrition-rich orphan crop chia (Salvia hispanica) and its implications for future breeding.

Plant Reactome Knowledgebase: empowering plant pathway exploration and OMICS data analysis.

Planteome 2024 Update: Reference Ontologies and Knowledgebase for Plant Biology.

Ensembl Genomes 2022: an expanding genome resource for non-vertebrates.

Plant Reactome: a knowledgebase and resource for comparative pathway analysis.

Plasmonic Nanolayer Composites: Coupled Plasmon Polaritons, Effective-Medium Response, and Subdiffraction Light Manipulation.

The Genome of <i>Tolypocladium inflatum</i>: Evolution, Organization, and Expression of the Cyclosporin Biosynthetic Gene Cluster.

Biocuration of a Transcription Factors Network Involved in Submergence Tolerance during Seed Germination and Coleoptile Elongation in Rice (Oryza sativa).

FragariaCyc: A Metabolic Pathway Database for Woodland Strawberry Fragaria vesca.

VitisCyc: a metabolic pathway knowledgebase for grapevine (Vitis vinifera).