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Phenotypic profiling of human induced regulatory T cells at early differentiation: insights into distinct immunosuppressive potential.
- Published in:
- Cellular & Molecular Life Sciences, 2024, v. 81, n. 1, p. 1, doi. 10.1007/s00018-024-05429-3
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- Publication type:
- Article
Disruption of HSD17B12 in mouse hepatocytes leads to reduced body weight and defect in the lipid droplet expansion associated with microvesicular steatosis.
- Published in:
- FASEB Journal, 2024, v. 38, n. 17, p. 1, doi. 10.1096/fj.202400333RR
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- Publication type:
- Article
ECCB2024: The 23rd European Conference on Computational Biology.
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- Bioinformatics, 2024, v. 40, p. ii1, doi. 10.1093/bioinformatics/btae422
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- Article
Targeted serum proteomics of longitudinal samples from newly diagnosed youth with type 1 diabetes distinguishes markers of disease and C-peptide trajectory.
- Published in:
- Diabetologia, 2023, v. 66, n. 11, p. 1983, doi. 10.1007/s00125-023-05974-9
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- Article
Umbilical cord blood DNA methylation in children who later develop type 1 diabetes.
- Published in:
- Diabetologia, 2022, v. 65, n. 9, p. 1534, doi. 10.1007/s00125-022-05726-1
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- Article
Early DNA methylation changes in children developing beta cell autoimmunity at a young age.
- Published in:
- Diabetologia, 2022, v. 65, n. 5, p. 844, doi. 10.1007/s00125-022-05657-x
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- Publication type:
- Article
Enterovirus-associated changes in blood transcriptomic profiles of children with genetic susceptibility to type 1 diabetes.
- Published in:
- Diabetologia, 2018, v. 61, n. 2, p. 381, doi. 10.1007/s00125-017-4460-7
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- Article
Crowdsourcing digital health measures to predict Parkinson's disease severity: the Parkinson's Disease Digital Biomarker DREAM Challenge.
- Published in:
- NPJ Digital Medicine, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s41746-021-00414-7
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- Publication type:
- Article
Chronic nonbacterial prostate inflammation in a rat model is associated with changes of gut microbiota that can be modified with a galactoglucomannan‐rich hemicellulose extract in the diet.
- Published in:
- BJU International, 2019, v. 123, n. 5, p. 899, doi. 10.1111/bju.14553
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- Publication type:
- Article
Long Intergenic Noncoding RNA MIAT as a Regulator of Human Th17 Cell Differentiation.
- Published in:
- Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.856762
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- Publication type:
- Article
Benchmarking tools for detecting longitudinal differential expression in proteomics data allows establishing a robust reproducibility optimization regression approach.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-35564-z
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- Publication type:
- Article
An Infancy-Onset 20-Year Dietary Counselling Intervention and Gut Microbiota Composition in Adulthood.
- Published in:
- Nutrients, 2022, v. 14, n. 13, p. 2667, doi. 10.3390/nu14132667
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- Publication type:
- Article
PASI: A novel pathway method to identify delicate group effects.
- Published in:
- PLoS ONE, 2018, v. 13, n. 7, p. 1, doi. 10.1371/journal.pone.0199991
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- Publication type:
- Article
Polymorphism in interferon alpha/beta receptor contributes to glucocorticoid response and outcome of ARDS and COVID-19.
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- Critical Care, 2023, v. 27, n. 1, p. 1, doi. 10.1186/s13054-023-04388-8
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- Publication type:
- Article
Protein synthesis is suppressed in sporadic and familial Parkinson's disease by LRRK2.
- Published in:
- FASEB Journal, 2020, v. 34, n. 11, p. 14217, doi. 10.1096/fj.202001046R
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- Publication type:
- Article
Hydroxysteroid (17β) dehydrogenase 13 deficiency triggers hepatic steatosis and inflammation in mice.
- Published in:
- FASEB Journal, 2018, v. 32, n. 6, p. 3434, doi. 10.1096/fj.201700914R
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- Publication type:
- Article
VarSCAT: A computational tool for sequence context annotations of genomic variants.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1010727
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- Publication type:
- Article
Selective loss of kisspeptin signaling in oocytes causes progressive premature ovulatory failure.
- Published in:
- 2022
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- Publication type:
- journal article
Innate Immune Activity Is Detected Prior to Seroconversion in Children With HLA-Conferred Type 1 Diabetes Susceptibility.
- Published in:
- Diabetes, 2014, v. 63, n. 7, p. 2402, doi. 10.2337/db13-1775
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- Publication type:
- Article
A practical comparison of methods for detecting transcriptionfactor binding sites in ChIP-seq experiments.
- Published in:
- BMC Genomics, 2009, v. 10, p. 618, doi. 10.1186/1471-2164-10-618
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- Publication type:
- Article
Tool evaluation for the detection of variably sized indels from next generation whole genome and targeted sequencing data.
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- PLoS Computational Biology, 2022, v. 18, n. 2, p. 1, doi. 10.1371/journal.pcbi.1009269
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- Publication type:
- Article
Benchmarking methods for detecting differential states between conditions from multi-subject single-cell RNA-seq data.
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 5, p. 1, doi. 10.1093/bib/bbac286
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- Publication type:
- Article
Correction to: PhosPiR: an automated phosphoproteomic pipeline in R.
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 3, p. 1, doi. 10.1093/bib/bbac153
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- Publication type:
- Article
PhosPiR: an automated phosphoproteomic pipeline in R.
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1093/bib/bbab510
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- Publication type:
- Article
Estimating cell type-specific differential expression using deconvolution.
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1093/bib/bbab433
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- Publication type:
- Article
Systematic evaluation of differential splicing tools for RNA-seq studies.
- Published in:
- Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 2052, doi. 10.1093/bib/bbz126
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- Publication type:
- Article
A comprehensive evaluation of popular proteomics software workflows for label-free proteome quantification and imputation.
- Published in:
- Briefings in Bioinformatics, 2018, v. 19, n. 6, p. 1344, doi. 10.1093/bib/bbx054
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- Publication type:
- Article
A systematic evaluation of normalization methods in quantitative label-free proteomics.
- Published in:
- Briefings in Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1093/bib/bbw095
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- Publication type:
- Article
Comparison of methods to detect differentially expressed genes between single-cell populations.
- Published in:
- Briefings in Bioinformatics, 2017, v. 18, n. 5, p. 735, doi. 10.1093/bib/bbw057
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- Publication type:
- Article
Empirical comparison of structure-based pathway methods.
- Published in:
- Briefings in Bioinformatics, 2016, v. 17, n. 2, p. 336, doi. 10.1093/bib/bbv049
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- Publication type:
- Article
Comparison of software packages for detecting differential expression in RNA-seq studies.
- Published in:
- Briefings in Bioinformatics, 2015, v. 16, n. 1, p. 59, doi. 10.1093/bib/bbt086
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- Publication type:
- Article
Optimized detection of differential expression in global profiling experiments: case studies in clinical transcriptomic and quantitative proteomic datasets.
- Published in:
- Briefings in Bioinformatics, 2009, v. 10, n. 5, p. 547, doi. 10.1093/bib/bbp033
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- Publication type:
- Article
Lack of androgen receptor SUMOylation results in male infertility due to epididymal dysfunction.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-08730-z
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- Publication type:
- Article
Pancreas Whole Tissue Transcriptomics Highlights the Role of the Exocrine Pancreas in Patients With Recently Diagnosed Type 1 Diabetes.
- Published in:
- Frontiers in Endocrinology, 2022, v. 13, p. 1, doi. 10.3389/fendo.2022.861985
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- Publication type:
- Article
Missing value imputation improves clustering and interpretation of gene expression microarray data.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-202
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- Publication type:
- Article
Cell-connectivity-guided trajectory inference from single-cell data.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad515
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- Publication type:
- Article
scShaper: an ensemble method for fast and accurate linear trajectory inference from single-cell RNA-seq data.
- Published in:
- Bioinformatics, 2022, v. 38, n. 5, p. 1328, doi. 10.1093/bioinformatics/btab831
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- Publication type:
- Article
Stable Iterative Variable Selection.
- Published in:
- Bioinformatics, 2021, v. 37, n. 24, p. 4810, doi. 10.1093/bioinformatics/btab501
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- Publication type:
- Article
ILoReg: a tool for high-resolution cell population identification from single-cell RNA-seq data.
- Published in:
- Bioinformatics, 2021, v. 37, n. 8, p. 1107, doi. 10.1093/bioinformatics/btaa919
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- Publication type:
- Article
SimPhospho: a software tool enabling confident phosphosite assignment.
- Published in:
- Bioinformatics, 2018, v. 34, n. 15, p. 2690, doi. 10.1093/bioinformatics/bty151
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- Publication type:
- Article
Likelihood contrasts: a machine learning algorithm for binary classification of longitudinal data.
- Published in:
- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-57924-9
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- Publication type:
- Article
End-of-life chemotherapy use at a Finnish university hospital: a retrospective cohort study.
- Published in:
- Acta Oncologica, 2017, v. 56, n. 10, p. 1272, doi. 10.1080/0284186X.2017.1332424
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- Publication type:
- Article
Assessing the utilization of radiotherapy near end of life at a Finnish University Hospital: a retrospective cohort study.
- Published in:
- Acta Oncologica, 2017, v. 56, n. 10, p. 1265, doi. 10.1080/0284186X.2017.1324638
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- Publication type:
- Article
A Note on an Exon-Based Strategy to Identify Differentially Expressed Genes in RNA-Seq Experiments.
- Published in:
- PLoS ONE, 2014, v. 9, n. 12, p. 1, doi. 10.1371/journal.pone.0115964
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- Publication type:
- Article
Analysis of Time-Resolved Gene Expression Measurements across Individuals.
- Published in:
- PLoS ONE, 2013, v. 8, n. 12, p. 1, doi. 10.1371/journal.pone.0082340
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- Publication type:
- Article
Melanoma-Associated Cancer-Testis Antigen 16 (CT16) Regulates the Expression of Apoptotic and Antiapoptotic Genes and Promotes Cell Survival.
- Published in:
- PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0045382
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- Publication type:
- Article
Predicting Quantitative Genetic Interactions by Means of Sequential Matrix Approximation.
- Published in:
- PLoS ONE, 2008, v. 3, n. 9, p. 1, doi. 10.1371/journal.pone.0003284
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- Publication type:
- Article
Decidualization of Human Endometrial Stromal Fibroblasts is a Multiphasic Process Involving Distinct Transcriptional Programs.
- Published in:
- Reproductive Sciences, 2019, v. 26, n. 3, p. 323, doi. 10.1177/1933719118802056
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- Publication type:
- Article
Risk factors for revision due to prosthetic joint infection following total knee arthroplasty based on 62,087 knees in the Finnish Arthroplasty Register from 2014 to 2020.
- Published in:
- Acta Orthopaedica, 2023, v. 94, p. 215, doi. 10.2340/17453674.2023.12307
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- Publication type:
- Article
Risk factors for prosthetic joint infections following total hip arthroplasty based on 33,337 hips in the Finnish Arthroplasty Register from 2014 to 2018.
- Published in:
- Acta Orthopaedica, 2021, v. 92, n. 6, p. 665, doi. 10.1080/17453674.2021.1944529
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- Publication type:
- Article