Works by Ellonen, Pekka

Results: 38

Distinct molecular profiles and shared drug vulnerabilities in pancreatic metastases of renal cell carcinoma.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-07004-9

By:

Roos-Mattila, Matilda;
Kallio, Pauliina;
Luck, Tamara J.;
Polso, Minttu;
Kumari, Romika;
Mikkonen, Piia;
Välimäki, Katja;
Malmstedt, Minna;
Ellonen, Pekka;
Pellinen, Teijo;
Heckman, Caroline A.;
Mustonen, Harri;
Puolakkainen, Pauli A.;
Alitalo, Kari;
Kallioniemi, Olli;
Mirtti, Tuomas;
Rannikko, Antti S.;
Pietiäinen, Vilja M.;
Seppänen, Hanna E.

Publication type:

Article

Distinct molecular profiles and shared drug vulnerabilities in pancreatic metastases of renal cell carcinoma.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-07004-9

By:

Roos-Mattila, Matilda;
Kallio, Pauliina;
Luck, Tamara J.;
Polso, Minttu;
Kumari, Romika;
Mikkonen, Piia;
Välimäki, Katja;
Malmstedt, Minna;
Ellonen, Pekka;
Pellinen, Teijo;
Heckman, Caroline A.;
Mustonen, Harri;
Puolakkainen, Pauli A.;
Alitalo, Kari;
Kallioniemi, Olli;
Mirtti, Tuomas;
Rannikko, Antti S.;
Pietiäinen, Vilja M.;
Seppänen, Hanna E.

Publication type:

Article

Driver Gene and Novel Mutations in Asbestos-Exposed Lung Adenocarcinoma and Malignant Mesothelioma Detected by Exome Sequencing.

Published in:

Lung (0341-2040), 2016, v. 194, n. 1, p. 125, doi. 10.1007/s00408-015-9814-7

By:

Mäki-Nevala, Satu;
Sarhadi, Virinder;
Knuuttila, Aija;
Scheinin, Ilari;
Ellonen, Pekka;
Lagström, Sonja;
Rönty, Mikko;
Kettunen, Eeva;
Husgafvel-Pursiainen, Kirsti;
Wolff, Henrik;
Knuutila, Sakari

Publication type:

Article

Differential somatic coding variant landscapes between laser microdissected luminal epithelial cells from canine mammary invasive ductal solid carcinoma and comedocarcinoma.

Published in:

BMC Cancer, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12885-024-13239-w

By:

Deckwirth, Vivi;
Hundi, Sruthi;
Hytönen, Marjo K.;
Hannula, Sari;
Ellonen, Pekka;
Björkenheim, Pia;
Sukura, Antti;
Lohi, Hannes

Publication type:

Article

Author Correction: Clonal hematopoiesis in patients with rheumatoid arthritis.

Published in:

2021

By:

Savola, Paula;
Lundgren, Sofie;
Keränen, Mikko A. I.;
Almusa, Henrikki;
Ellonen, Pekka;
Leirisalo-Repo, Marjatta;
Kelkka, Tiina;
Mustjoki, Satu

Publication type:

Correction Notice

Identifying haplotypes in recessive inherited retinal dystrophies using whole‐genome linked‐read sequencing.

Published in:

Clinical Genetics, 2021, v. 99, n. 1, p. 193, doi. 10.1111/cge.13847

By:

Repo, Pauliina;
Järvinen, Reetta‐Stiina;
Sankila, Eeva‐Marja;
Paavo, Maarjaliis;
Ellonen, Pekka;
Kivelä, Tero T.;
Turunen, Joni A.

Publication type:

Article

Genetic markers and population history: Finland revisited.

Published in:

European Journal of Human Genetics, 2009, v. 17, n. 10, p. 1336, doi. 10.1038/ejhg.2009.53

By:

Palo, Jukka U.;
Ulmanen, Ismo;
Lukka, Matti;
Ellonen, Pekka;
Sajantila, Antti

Publication type:

Article

Analysis of four neuroligin genes as candidates for autism.

Published in:

European Journal of Human Genetics, 2005, v. 13, n. 12, p. 1285, doi. 10.1038/sj.ejhg.5201474

By:

Ylisaukko-oja, Tero;
Rehnström, Karola;
Auranen, Mari;
Vanhala, Raija;
Alen, Reija;
Kempas, Elli;
Ellonen, Pekka;
Turunen, Joni A.;
Makkonen, Ismo;
Riikonen, Raili;
Nieminen-von Wendt, Taina;
von Wendt, Lennart;
Peltonen, Leena;
Järvelä, Irma

Publication type:

Article

Risk Alleles of USF1 Gene Predict Cardiovascular Disease of Women in Two Prospective Studies.

Published in:

PLoS Genetics, 2006, v. 2, n. 5, p. e69, doi. 10.1371/journal.pgen.0020069

By:

Komulainen, Kati;
Alanne, Mervi;
Auro, Kirsi;
Kilpikari, Riika;
Pajukanta, Päivi;
Saarela, Janna;
Ellonen, Pekka;
Salminen, Kaisa;
Kulathinal, Sangita;
Kuulasmaa, Kari;
Silander, Kaisa;
Salomaa, Veikko;
Perola, Markus;
Peltonen, Leena

Publication type:

Article

Global Transcript Profiles of Fat in Monozygotic Twins Discordant for BMI: Pathways behind Acquired Obesity.

Published in:

PLoS Medicine, 2008, v. 5, n. 3, p. e51, doi. 10.1371/journal.pmed.0050051

By:

Pietiläinen, Kirsi H.;
Naukkarinen, Jussi;
Rissanen, Aila;
Saharinen, Juha;
Ellonen, Pekka;
Keränen, Heli;
Suomalainen, Anu;
Götz, Alexandra;
Suortti, Tapani;
Yki-Järvinen, Hannele;
Orešič, Matej;
Kaprio, Jaakko;
Peltonen, Leena

Publication type:

Article

IDH1 Expression via the R132H Mutation–Specific Antibody in Adrenocortical Neoplasias—Prognostic Impact in Carcinomas.

Published in:

Journal of the Endocrine Society, 2020, v. 4, n. 4, p. N.PAG, doi. 10.1210/jendso/bvaa018

By:

Pennanen, Mirkka;
Tynninen, Olli;
Kytölä, Soili;
Ellonen, Pekka;
Mustonen, Harri;
Heiskanen, Ilkka;
Haglund, Caj;
Arola, Johanna

Publication type:

Article

Mitochondrial genome-wide analysis of nuclear DNA methylation quantitative trait loci.

Published in:

Human Molecular Genetics, 2022, v. 31, n. 10, p. 1720, doi. 10.1093/hmg/ddab339

By:

Laaksonen, Jaakko;
Mishra, Pashupati P;
Seppälä, Ilkka;
Raitoharju, Emma;
Marttila, Saara;
Mononen, Nina;
Lyytikäinen, Leo-Pekka;
Kleber, Marcus E;
Delgado, Graciela E;
Lepistö, Maija;
Almusa, Henrikki;
Ellonen, Pekka;
Lorkowski, Stefan;
März, Winfried;
Hutri-Kähönen, Nina;
Raitakari, Olli;
Kähönen, Mika;
Salonen, Jukka T;
Lehtimäki, Terho

Publication type:

Article

Case studies investigating genetic heterogeneity between anatomically distinct bone marrow compartments in acute myeloid leukemia.

Published in:

Leukemia & Lymphoma, 2018, v. 59, n. 12, p. 3002, doi. 10.1080/10428194.2018.1453067

By:

Ojamies, Poojitha N.;
Kontro, Mika;
Edgren, Henrik;
Ellonen, Pekka;
Heckman, Caroline;
Porkka, Kimmo;
Wolf, Maija;
Kallioniemi, Olli

Publication type:

Article

Chromosome 1 loci in Finnish schizophrenia families.

Published in:

Human Molecular Genetics, 2001, v. 10, n. 15, doi. 10.1093/hmg/10.15.1611

By:

Ekelund, Jesper;
Hovatta, Iiris;
Parker, Alex;
Paunio, Tiina;
Varilo, Teppo;
Martin, Rory;
Suhonen, Johanna;
Ellonen, Pekka;
Chan, Gayun;
Sinsheimer, Janet S.;
Sobel, Eric;
Juvonen, Hannu;
Arajärvi, Ritva;
Partonen, Timo;
Suvisaari, Jaana;
Lönnqvist, Jouko;
Meyer, Joanne;
Peltonen, Leena

Publication type:

Article

STAT3 Mutation Is Associated with STAT3 Activation in CD30+ ALK− ALCL.

Published in:

Cancers, 2020, v. 12, n. 3, p. 702, doi. 10.3390/cancers12030702

By:

Andersson, Emma I.;
Brück, Oscar;
Braun, Till;
Mannisto, Susanna;
Saikko, Leena;
Lagström, Sonja;
Ellonen, Pekka;
Leppä, Sirpa;
Herling, Marco;
Kovanen, Panu E.;
Mustjoki, Satu

Publication type:

Article

A quality assessment survey of SNP genotyping laboratories.

Published in:

Human Mutation, 2006, v. 27, n. 7, p. 711, doi. 10.1002/humu.20346

By:

Lahermo, Päivi;
Liljedahl, Ulrika;
Alnaes, Grethe;
Axelsson, Tomas;
Brookes, Anthony J.;
Ellonen, Pekka;
Groop, Per-Henrik;
Halldén, Christer;
Holmberg, Dan;
Holmberg, Kristina;
Keinänen, Mauri;
Kepp, Katrin;
Kere, Juha;
Kiviluoma, Päivi;
Kristensen, Vessela;
Lindgren, Cecilia;
Odeberg, Jacob;
Osterman, Pia;
Parkkonen, Maija;
Saarela, Janna

Publication type:

Article

TaME-seq: An efficient sequencing approach for characterisation of HPV genomic variability and chromosomal integration.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-018-36669-6

By:

Lagström, Sonja;
Umu, Sinan Uğur;
Lepistö, Maija;
Ellonen, Pekka;
Meisal, Roger;
Christiansen, Irene Kraus;
Ambur, Ole Herman;
Rounge, Trine B.

Publication type:

Article

The CRCbiome study: a large prospective cohort study examining the role of lifestyle and the gut microbiome in colorectal cancer screening participants.

Published in:

2021

By:

Kværner, Ane Sørlie;
Birkeland, Einar;
Bucher-Johannessen, Cecilie;
Vinberg, Elina;
Nordby, Jan Inge;
Kangas, Harri;
Bemanian, Vahid;
Ellonen, Pekka;
Botteri, Edoardo;
Natvig, Erik;
Rognes, Torbjørn;
Hovig, Eivind;
Lyle, Robert;
Ambur, Ole Herman;
de Vos, Willem M.;
Bultman, Scott;
Hjartåker, Anette;
Landberg, Rikard;
Song, Mingyang;
Blix, Hege Salvesen

Publication type:

journal article

Corrigendum: Adult-Onset Anti-Citrullinated Peptide Antibody-Negative Destructive Rheumatoid Arthritis Is Characterized by a Disease-Specific CD8+ T Lymphocyte Signature.

Published in:

2021

By:

Kelkka, Tiina;
Savola, Paula;
Bhattacharya, Dipabarna;
Huuhtanen, Jani;
Lönnberg, Tapio;
Kankainen, Matti;
Paalanen, Kirsi;
Tyster, Mikko;
Lepistö, Maija;
Ellonen, Pekka;
Smolander, Johannes;
Eldfors, Samuli;
Yadav, Bhagwan;
Khan, Sofia;
Koivuniemi, Riitta;
Sjöwall, Christopher;
Elo, Laura L.;
Lähdesmäki, Harri;
Maeda, Yuka;
Nishikawa, Hiroyoshi

Publication type:

Correction Notice

Adult-Onset Anti-Citrullinated Peptide Antibody-Negative Destructive Rheumatoid Arthritis Is Characterized by a Disease-Specific CD8+ T Lymphocyte Signature.

Published in:

Frontiers in Immunology, 2020, v. 11, p. N.PAG, doi. 10.3389/fimmu.2020.578848

By:

Kelkka, Tiina;
Savola, Paula;
Bhattacharya, Dipabarna;
Huuhtanen, Jani;
Lönnberg, Tapio;
Kankainen, Matti;
Paalanen, Kirsi;
Tyster, Mikko;
Lepistö, Maija;
Ellonen, Pekka;
Smolander, Johannes;
Eldfors, Samuli;
Yadav, Bhagwan;
Khan, Sofia;
Koivuniemi, Riitta;
Sjöwall, Christopher;
Elo, Laura L.;
Lähdesmäki, Harri;
Maeda, Yuka;
Nishikawa, Hiroyashi

Publication type:

Article

Comparison of solution-based exome capture methods for next generation sequencing.

Published in:

Genome Biology, 2011, v. 12, n. 9, p. 1, doi. 10.1186/gb-2011-12-9-r94

By:

Sulonen, Anna-Maija;
Ellonen, Pekka;
Almusa, Henrikki;
Lepistö, Maija;
Eldfors, Samuli;
Hannula, Sari;
Miettinen, Timo;
Tyynismaa, Henna;
Salo, Perttu;
Heckman, Caroline;
Joensuu, Heikki;
Raivio, Taneli;
Suomalainen, Anu;
Saarela, Janna

Publication type:

Article

SLC18A3 variants lead to fetal akinesia deformation sequence early in pregnancy.

Published in:

American Journal of Medical Genetics. Part A, 2019, v. 179, n. 7, p. 1362, doi. 10.1002/ajmg.a.61186

By:

Hakonen, Anna H.;
Polvi, Anne;
Saloranta, Carola;
Paetau, Anders;
Heikkilä, Päivi;
Almusa, Henrikki;
Ellonen, Pekka;
Jakkula, Eveliina;
Saarela, Janna;
Aittomäki, Kristiina

Publication type:

Article

Copy number alterations and neoplasia-specific mutations in MELK, PDCD1LG2, TLN1, and PAX5 at 9p in different neoplasias.

Published in:

Genes, Chromosomes & Cancer, 2014, v. 53, n. 7, p. 579, doi. 10.1002/gcc.22168

By:

Sarhadi, Virinder Kaur;
Lahti, Leo;
Scheinin, Ilari;
Ellonen, Pekka;
Kettunen, Eeva;
Serra, Massimo;
Scotlandi, Katia;
Picci, Piero;
Knuutila, Sakari

Publication type:

Article

Mutated Ephrin Receptor Genes in Non-Small Cell Lung Carcinoma and Their Occurrence with Driver Mutations-Targeted Resequencing Study on Formalin-Fixed, Paraffin-Embedded Tumor Material of 81 Patients.

Published in:

Genes, Chromosomes & Cancer, 2013, v. 52, n. 12, p. 1141, doi. 10.1002/gcc.22109

By:

Mäki‐Nevala, Satu;
Kaur Sarhadi, Virinder;
Tuononen, Katja;
Lagström, Sonja;
Ellonen, Pekka;
Rönty, Mikko;
Wirtanen, Aino;
Knuuttila, Aija;
Knuutila, Sakari

Publication type:

Article

Comparison of Targeted Next-Generation Sequencing (NGS) and Real-Time PCR in the Detection of EGFR, KRAS, and BRAF Mutations on Formalin-Fixed, Paraffin-Embedded Tumor Material of Non-Small Cell Lung Carcinoma-Superiority of NGS.

Published in:

Genes, Chromosomes & Cancer, 2013, v. 52, n. 5, p. 503, doi. 10.1002/gcc.22047

By:

Tuononen, Katja;
Mäki‐Nevala, Satu;
Sarhadi, Virinder Kaur;
Wirtanen, Aino;
Rönty, Mikko;
Salmenkivi, Kaisa;
Andrews, Jenny M.;
Telaranta‐Keerie, Aino I.;
Hannula, Sari;
Lagström, Sonja;
Ellonen, Pekka;
Knuuttila, Aija;
Knuutila, Sakari

Publication type:

Article

Targeted resequencing reveals ALK fusions in non-small cell lung carcinomas detected by FISH, immunohistochemistry, and real-time RT-PCR: a comparison of four methods.

Published in:

2013

By:

Tuononen, Katja;
Sarhadi, Virinder Kaur;
Wirtanen, Aino;
Rönty, Mikko;
Salmenkivi, Kaisa;
Knuuttila, Aija;
Remes, Satu;
Telaranta-Keerie, Aino I;
Bloor, Stuart;
Ellonen, Pekka;
Knuutila, Sakari

Publication type:

Journal Article

Targeted Resequencing Reveals ALK Fusions in Non-Small Cell Lung Carcinomas Detected by FISH, Immunohistochemistry, and Real-Time RT-PCR: A Comparison of Four Methods.

Published in:

BioMed Research International, 2013, v. 2013, p. 1, doi. 10.1155/2013/757490

By:

Tuononen, Katja;
Sarhadi, Virinder Kaur;
Wirtanen, Aino;
Rönty, Mikko;
Salmenkivi, Kaisa;
Knuuttila, Aija;
Remes, Satu;
Telaranta-Keerie, Aino I.;
Bloor, Stuart;
Ellonen, Pekka;
Knuutila, Sakari

Publication type:

Article

Novel TBL1XR1, EPHA7 and SLFN12 mutations in a Sezary syndrome patient discovered by whole exome sequencing.

Published in:

Experimental Dermatology, 2014, v. 23, n. 5, p. 366, doi. 10.1111/exd.12405

By:

Andersson, Emma;
Eldfors, Samuli;
Edgren, Henrik;
Ellonen, Pekka;
Väkevä, Liisa;
Ranki, Annamari;
Mustjoki, Satu

Publication type:

Article

Examining the effect of mitochondrial DNA variants on blood pressure in two Finnish cohorts.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-020-79931-6

By:

Laaksonen, Jaakko;
Mishra, Pashupati P.;
Seppälä, Ilkka;
Lyytikäinen, Leo-Pekka;
Raitoharju, Emma;
Mononen, Nina;
Lepistö, Maija;
Almusa, Henrikki;
Ellonen, Pekka;
Hutri-Kähönen, Nina;
Juonala, Markus;
Raitakari, Olli;
Kähönen, Mika;
Salonen, Jukka T.;
Lehtimäki, Terho

Publication type:

Article

Gender-Specific Associations Between Saliva Microbiota and Body Size.

Published in:

Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.00767

By:

Raju, Sajan C.;
Lagström, Sonja;
Ellonen, Pekka;
de Vos, Willem M.;
Eriksson, Johan G.;
Weiderpass, Elisabete;
Rounge, Trine B.

Publication type:

Article

Somatic mTOR mutation in clonally expanded T lymphocytes associated with chronic graft versus host disease.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16115-w

By:

Kim, Daehong;
Park, Giljun;
Huuhtanen, Jani;
Lundgren, Sofie;
Khajuria, Rajiv K.;
Hurtado, Ana M.;
Muñoz-Calleja, Cecilia;
Cardeñoso, Laura;
Gómez-García de Soria, Valle;
Chen-Liang, Tzu Hua;
Eldfors, Samuli;
Ellonen, Pekka;
Hannula, Sari;
Kankainen, Matti;
Bruck, Oscar;
Kreutzman, Anna;
Salmenniemi, Urpu;
Lönnberg, Tapio;
Jerez, Andrés;
Itälä-Remes, Maija

Publication type:

Article

Targeted Resequencing of the Pericentromere of Chromosome 2 Linked to Constitutional Delay of Growth and Puberty.

Published in:

PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0128524

By:

Cousminer, Diana L.;
Leinonen, Jaakko T.;
Sarin, Antti-Pekka;
Chheda, Himanshu;
Surakka, Ida;
Wehkalampi, Karoliina;
Ellonen, Pekka;
Ripatti, Samuli;
Dunkel, Leo;
Palotie, Aarno;
Widén, Elisabeth

Publication type:

Article

MicroRNA Expression Profiling Reveals MiRNA Families Regulating Specific Biological Pathways in Mouse Frontal Cortex and Hippocampus.

Published in:

PLoS ONE, 2011, v. 6, n. 6, p. 1, doi. 10.1371/journal.pone.0021495

By:

Juhila, Juuso;
Sipilä, Tessa;
Icay, Katherine;
Nicorici, Daniel;
Ellonen, Pekka;
Kallio, Aleksi;
Korpelainen, Eija;
Greco, Dario;
Hovatta, Iiris

Publication type:

Article

Gender Differences in Genetic Risk Profiles for Cardiovascular Disease.

Published in:

PLoS ONE, 2008, v. 3, n. 10, p. 1, doi. 10.1371/journal.pone.0003615

By:

Silander, Kaisa;
Alanne, Mervi;
Kristiansson, Kati;
Saarela, Olli;
Ripatti, Samuli;
Auro, Kirsi;
Karvanen, Juha;
Kulathinal, Sangita;
Niemelä, Matti;
Ellonen, Pekka;
Vartiainen, Erkki;
Jousilahti, Pekka;
Saarela, Janna;
Kuulasmaa, Kari;
Evans, Alun;
Perola, Markus;
Salomaa, Veikko;
Peltonen, Leena

Publication type:

Article

Breakpoint mapping and haplotype analysis of translocation t(1;12)(q43;q21.1) in two apparently independent families with vascular phenotypes.

Published in:

Molecular Genetics & Genomic Medicine, 2018, v. 6, n. 1, p. 56, doi. 10.1002/mgg3.346

By:

Luukkonen, Tiia Maria;
Mehrjouy, Mana M.;
Pöyhönen, Minna;
Anttonen, Anna‐Kaisa;
Lahermo, Päivi;
Ellonen, Pekka;
Paulin, Lars;
Tommerup, Niels;
Palotie, Aarno;
Varilo, Teppo

Publication type:

Article

NCOR2 is a novel candidate gene for migraine-epilepsy phenotype.

Published in:

Cephalalgia, 2022, v. 42, n. 7, p. 631, doi. 10.1177/03331024211068065

By:

Nuottamo, Marjo Eveliina;
Häppölä, Paavo;
Artto, Ville;
Hautakangas, Heidi;
Pirinen, Matti;
Hiekkalinna, Tero;
Ellonen, Pekka;
Lepistö, Maija;
Hämäläinen, Eija;
Siren, Auli;
Lehesjoki, Anna-Elina;
Kallela, Mikko;
Palotie, Aarno;
Kaunisto, Mari Anneli;
Wessman, Maija

Publication type:

Article

TBX22 and Tongue-Tie.

Published in:

Cleft Palate Craniofacial Journal, 2012, v. 49, n. 3, p. 378, doi. 10.1597/11-114

By:

Klockars, Tuomas;
Kyttänen, Suvi;
Ellonen, Pekka

Publication type:

Article

Discovery of mitochondrial DNA variants associated with genome-wide blood cell gene expression: a population-based mtDNA sequencing study.

Published in:

Human Molecular Genetics, 2019, v. 28, n. 8, p. 1381, doi. 10.1093/hmg/ddz011

By:

Laaksonen, Jaakko;
Seppälä, Ilkka;
Raitoharju, Emma;
Mononen, Nina;
Lyytikäinen, Leo-Pekka;
Waldenberger, Melanie;
Illig, Thomas;
Lepistö, Maija;
Almusa, Henrikki;
Ellonen, Pekka;
Hutri-Kähönen, Nina;
Juonala, Markus;
Kähönen, Mika;
Raitakari, Olli;
Salonen, Jukka T;
Lehtimäki, Terho

Publication type:

Article